Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1760 ATGATTGACCACAGAGAAAATCGCGAAAAAGGAGAACGGAAAATGCTGCGATCGAATGGCGGAGAGATGAATCAGAATCGACTGGGTGAGAAACAATCAGAATTTTTCACAGAGTATGGAGAGGCAAGCCGATACCAAATTCAGGAAGTTATTGGAAAAGGAAGCTACGGAGTTGTTGGTTCTGCAATTGATACCCAGACTGGTGAAAGAGTTGCCATCAAGAAAATTAATGATGTTTTTGAGCATGTATCTGATGCCATACGCATCTTAAGAGAAATTAAGCTTCTTCGTATGCTTCATCATCCCAATGTTGTAGAGTTGAAACATATTATGCTTCCTCCCTCACAACGAGAATTCAAAGATATATATATTGTTTTTGAGTTGATGAAGGCCGACCTTCACCAGGTAATTAAGGCAAATAATGGTCTCTCTGCCAAGCAGCATAAAGTTTTCTTGTATCAGCTTCTTAGTGGCCTAAAATATATACATGCAGCAAATGTTCTTCATCGAGATTTGAAGCCAAAGAACATACTTGCTAATACTGATTGCAGACTGAAGATATGTGATTTTGGCCTTGCTCGCGTATCTTTTAATGACGCCCCAACTACTATTTTCTGGACAGATTATGTTGCAACTCGTTGGTATCGTGCTCCTGAACTCTGTGGATCATTTTTCTCGAGATATACCCCTGCTATAGATATATGGAGTATCGGATGCATATTTGCAGAAATGCTTTCGGGAAAACCTCTGTTTCCTGGAAAAAATGTTGTTCACCAGTTAGATCTAATTACTGATCTGTTTGGTACTCCTGATGCTGAATCCATAGCGAGGATTCGGAACGAGAAGGCAAAAAGGTATCTTGGAAACATGCGTAAAAAATCACCAGTTCCATTCTCACGAAAGTTTCCTAATGTTGACCCATTGGCACTTCGTTTACTGGAACGCCTTTTGGCATTTGATCCCAAACGTCGTCTCACTGCTGCTGAAGCACTTGCTGATCCTTACTTCAATAGTATGAAGAACGGAGAAGCTGAAGCTTCTGTTCAACCAATTTCAAAACTTGAGTTTGAGTTTGAGCGGAAGAGATTAACAAAAGATGATGTTAGAGAGTTAATTTATGCAGAGATTTTAGAGTATCATCCCCAAATGCGTCAGGAGTGTCTACGCAATGGAGATCAAACTACCTTTATGTATCCGAGCGGGGTTGATCGGTTTAAGCTTCAGTTTGCGCATCTGGAAGAGAACTTTAGTAAGGGTGGTCAAGGAAGAGCTCCACTTCAAAGGCAGAATGTTTCATTACCTCGGGAGCGGGTTAGTCCACCCGAGCACAAGAACGCTGAGCATAGCAATGATTTTGGGAGTGGGAAAGAGAAGAGTTCTCTCCTCATGAAAAGTGCTAGCATTAGTTCGAGGTGTTTGGGGGCAATACCGGAGAAGTTTGAGGCGGAAGAAACAAGCTCTGAGGCGAAAAATGAAGCAAATGATGGATCGGCTCAAAAGATTGCAGTCCTTCAGAGTTGA 1521 41.62 MIDHRENREKGERKMLRSNGGEMNQNRLGEKQSEFFTEYGEASRYQIQEVIGKGSYGVVGSAIDTQTGERVAIKKINDVFEHVSDAIRILREIKLLRMLHHPNVVELKHIMLPPSQREFKDIYIVFELMKADLHQVIKANNGLSAKQHKVFLYQLLSGLKYIHAANVLHRDLKPKNILANTDCRLKICDFGLARVSFNDAPTTIFWTDYVATRWYRAPELCGSFFSRYTPAIDIWSIGCIFAEMLSGKPLFPGKNVVHQLDLITDLFGTPDAESIARIRNEKAKRYLGNMRKKSPVPFSRKFPNVDPLALRLLERLLAFDPKRRLTAAEALADPYFNSMKNGEAEASVQPISKLEFEFERKRLTKDDVRELIYAEILEYHPQMRQECLRNGDQTTFMYPSGVDRFKLQFAHLEENFSKGGQGRAPLQRQNVSLPRERVSPPEHKNAEHSNDFGSGKEKSSLLMKSASISSRCLGAIPEKFEAEETSSEAKNEANDGSAQKIAVLQS 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12815884 12821410 - Sed0016725.1 Sed01g1760 701064
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1760 506 FunFam Mitogen-activated protein kinase 33 138 - -
Sed01g1760 506 ProSitePatterns MAP kinase signature. 80 183 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1760 506 FunFam Mitogen-activated protein kinase 131 359 - -
Sed01g1760 506 SUPERFAMILY Protein kinase-like (PK-like) 41 339 IPR011009 -
Sed01g1760 506 ProSiteProfiles Protein kinase domain profile. 45 336 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1760 506 SMART serkin_6 45 336 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1760 506 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 42 377 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Sed01g1760 506 Gene3D Phosphorylase Kinase; domain 1 61 382 - -
Sed01g1760 506 CDD STKc_TDY_MAPK 44 381 - -
Sed01g1760 506 MobiDBLite consensus disorder prediction 1 25 - -
Sed01g1760 506 MobiDBLite consensus disorder prediction 479 506 - -
Sed01g1760 506 MobiDBLite consensus disorder prediction 418 460 - -
Sed01g1760 506 ProSitePatterns Protein kinases ATP-binding region signature. 51 75 IPR017441 GO:0005524(InterPro)
Sed01g1760 506 MobiDBLite consensus disorder prediction 437 454 - -
Sed01g1760 506 Gene3D Transferase(Phosphotransferase) domain 1 131 359 - -
Sed01g1760 506 MobiDBLite consensus disorder prediction 1 17 - -
Sed01g1760 506 Pfam Protein kinase domain 45 336 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1760 506 MobiDBLite consensus disorder prediction 491 506 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1760 Sed-Chr1:12815884 Sed06g0204 Sed-Chr6:1538295 9.10E-179 dispersed
Sed01g1760 Sed-Chr1:12815884 Sed12g2110 Sed-Chr12:31783363 3.70E-196 wgd
Sed01g1760 Sed-Chr1:12815884 Sed08g2751 Sed-Chr8:39187253 5.50E-192 wgd
Sed01g1760 Sed-Chr1:12815884 Sed08g0397 Sed-Chr8:2389941 1.10E-195 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78626 PF00069 Pkinase 3.90E-68 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1760 - - - 0.0