Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g1760 | ATGATTGACCACAGAGAAAATCGCGAAAAAGGAGAACGGAAAATGCTGCGATCGAATGGCGGAGAGATGAATCAGAATCGACTGGGTGAGAAACAATCAGAATTTTTCACAGAGTATGGAGAGGCAAGCCGATACCAAATTCAGGAAGTTATTGGAAAAGGAAGCTACGGAGTTGTTGGTTCTGCAATTGATACCCAGACTGGTGAAAGAGTTGCCATCAAGAAAATTAATGATGTTTTTGAGCATGTATCTGATGCCATACGCATCTTAAGAGAAATTAAGCTTCTTCGTATGCTTCATCATCCCAATGTTGTAGAGTTGAAACATATTATGCTTCCTCCCTCACAACGAGAATTCAAAGATATATATATTGTTTTTGAGTTGATGAAGGCCGACCTTCACCAGGTAATTAAGGCAAATAATGGTCTCTCTGCCAAGCAGCATAAAGTTTTCTTGTATCAGCTTCTTAGTGGCCTAAAATATATACATGCAGCAAATGTTCTTCATCGAGATTTGAAGCCAAAGAACATACTTGCTAATACTGATTGCAGACTGAAGATATGTGATTTTGGCCTTGCTCGCGTATCTTTTAATGACGCCCCAACTACTATTTTCTGGACAGATTATGTTGCAACTCGTTGGTATCGTGCTCCTGAACTCTGTGGATCATTTTTCTCGAGATATACCCCTGCTATAGATATATGGAGTATCGGATGCATATTTGCAGAAATGCTTTCGGGAAAACCTCTGTTTCCTGGAAAAAATGTTGTTCACCAGTTAGATCTAATTACTGATCTGTTTGGTACTCCTGATGCTGAATCCATAGCGAGGATTCGGAACGAGAAGGCAAAAAGGTATCTTGGAAACATGCGTAAAAAATCACCAGTTCCATTCTCACGAAAGTTTCCTAATGTTGACCCATTGGCACTTCGTTTACTGGAACGCCTTTTGGCATTTGATCCCAAACGTCGTCTCACTGCTGCTGAAGCACTTGCTGATCCTTACTTCAATAGTATGAAGAACGGAGAAGCTGAAGCTTCTGTTCAACCAATTTCAAAACTTGAGTTTGAGTTTGAGCGGAAGAGATTAACAAAAGATGATGTTAGAGAGTTAATTTATGCAGAGATTTTAGAGTATCATCCCCAAATGCGTCAGGAGTGTCTACGCAATGGAGATCAAACTACCTTTATGTATCCGAGCGGGGTTGATCGGTTTAAGCTTCAGTTTGCGCATCTGGAAGAGAACTTTAGTAAGGGTGGTCAAGGAAGAGCTCCACTTCAAAGGCAGAATGTTTCATTACCTCGGGAGCGGGTTAGTCCACCCGAGCACAAGAACGCTGAGCATAGCAATGATTTTGGGAGTGGGAAAGAGAAGAGTTCTCTCCTCATGAAAAGTGCTAGCATTAGTTCGAGGTGTTTGGGGGCAATACCGGAGAAGTTTGAGGCGGAAGAAACAAGCTCTGAGGCGAAAAATGAAGCAAATGATGGATCGGCTCAAAAGATTGCAGTCCTTCAGAGTTGA | 1521 | 41.62 | MIDHRENREKGERKMLRSNGGEMNQNRLGEKQSEFFTEYGEASRYQIQEVIGKGSYGVVGSAIDTQTGERVAIKKINDVFEHVSDAIRILREIKLLRMLHHPNVVELKHIMLPPSQREFKDIYIVFELMKADLHQVIKANNGLSAKQHKVFLYQLLSGLKYIHAANVLHRDLKPKNILANTDCRLKICDFGLARVSFNDAPTTIFWTDYVATRWYRAPELCGSFFSRYTPAIDIWSIGCIFAEMLSGKPLFPGKNVVHQLDLITDLFGTPDAESIARIRNEKAKRYLGNMRKKSPVPFSRKFPNVDPLALRLLERLLAFDPKRRLTAAEALADPYFNSMKNGEAEASVQPISKLEFEFERKRLTKDDVRELIYAEILEYHPQMRQECLRNGDQTTFMYPSGVDRFKLQFAHLEENFSKGGQGRAPLQRQNVSLPRERVSPPEHKNAEHSNDFGSGKEKSSLLMKSASISSRCLGAIPEKFEAEETSSEAKNEANDGSAQKIAVLQS | 506 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 12815884 | 12821410 | - | Sed0016725.1 | Sed01g1760 | 701064 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g1760 | 506 | FunFam | Mitogen-activated protein kinase | 33 | 138 | - | - | |
Sed01g1760 | 506 | ProSitePatterns | MAP kinase signature. | 80 | 183 | IPR003527 | GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed01g1760 | 506 | FunFam | Mitogen-activated protein kinase | 131 | 359 | - | - | |
Sed01g1760 | 506 | SUPERFAMILY | Protein kinase-like (PK-like) | 41 | 339 | IPR011009 | - | |
Sed01g1760 | 506 | ProSiteProfiles | Protein kinase domain profile. | 45 | 336 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed01g1760 | 506 | SMART | serkin_6 | 45 | 336 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed01g1760 | 506 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE | 42 | 377 | IPR050117 | GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER) | |
Sed01g1760 | 506 | Gene3D | Phosphorylase Kinase; domain 1 | 61 | 382 | - | - | |
Sed01g1760 | 506 | CDD | STKc_TDY_MAPK | 44 | 381 | - | - | |
Sed01g1760 | 506 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Sed01g1760 | 506 | MobiDBLite | consensus disorder prediction | 479 | 506 | - | - | |
Sed01g1760 | 506 | MobiDBLite | consensus disorder prediction | 418 | 460 | - | - | |
Sed01g1760 | 506 | ProSitePatterns | Protein kinases ATP-binding region signature. | 51 | 75 | IPR017441 | GO:0005524(InterPro) | |
Sed01g1760 | 506 | MobiDBLite | consensus disorder prediction | 437 | 454 | - | - | |
Sed01g1760 | 506 | Gene3D | Transferase(Phosphotransferase) domain 1 | 131 | 359 | - | - | |
Sed01g1760 | 506 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
Sed01g1760 | 506 | Pfam | Protein kinase domain | 45 | 336 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed01g1760 | 506 | MobiDBLite | consensus disorder prediction | 491 | 506 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g1760 | Sed-Chr1:12815884 | Sed06g0204 | Sed-Chr6:1538295 | 9.10E-179 | dispersed | |
Sed01g1760 | Sed-Chr1:12815884 | Sed12g2110 | Sed-Chr12:31783363 | 3.70E-196 | wgd | |
Sed01g1760 | Sed-Chr1:12815884 | Sed08g2751 | Sed-Chr8:39187253 | 5.50E-192 | wgd | |
Sed01g1760 | Sed-Chr1:12815884 | Sed08g0397 | Sed-Chr8:2389941 | 1.10E-195 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
78626 | PF00069 | Pkinase | 3.90E-68 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g1760 | - | - | - | 0.0 |