Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1761 ATGAAGAACCTCCTCAAGAAGTTCCATATCATGTCTAGTGGTCAGTCAGATGATGGAGCAGAAGGGTCTACTTCAACGAGGGGCGGTAAAGTAGTCGAGGATTCTTCGTCTCGCTCTCGGCCGACCCATTTTAATTCGGAGCATAAACCCTTCTCGGGGATATCCAATTGGTTGAACTCTGTTACCAATAGGCGTAGCCCCAGTCCTCCGTTATCTTCGAATCCCGGTATAGGGGCGATAATGGAGGCAACTGATTCAGTGTCTAGTAGAGATGCTGCAATGGATACTTCGAGGCATGATTCGGGGTCGAGTAACTCGAGGGATCCTGATGTAGAGGAAGAGTATCAGATACAGCTTGCCTTAGAAATGAGTGCCAGAGAGGATCCTGAGGCGGCTCAGATTGAGGCTGTGAAGCAGATCAGTTTGGGGACATGTGATCCTGATAACACTCCAGCTGAAGTTATTGCCTTCAGATATTGGAATTACAATTCTCTTAGCTATGATGACAAGATCATGGATGGCTTTTATGACCTATATGGAGTCTTTGCCGAGTCCACCTCAGAAAGAATGCCTTCCCTTGTTGATTTGCAAGGAGCGCCAATGTCCGACAATGTCACTTGGGAAGCAGTTCTGATCAATAAAGCTGCTGATGCTAACTTATTGAAACTAGAACAGACAGCATTGGAGATGGCCATCAAGACGAGGTCGGAATCTCCAAGTTCTGTAAATAGTTTGGTAAGAAAGCTTGCCATTTTAGTTTCGGATCATATGGGGGGACGGGTGGGGGATCCTGAAAAGATGTTGAGAAAATGGAGAAGTCTTAGTCATAGCCTGAAAGCAACCCTTGGTAGTATGGTTTTGCCTCTCGGTTCTCTTACACTAGGGTTGGCTCGTCATCGTGCATTGTTATTCAAGCTTTTGGCGGATGGTGTGGATATCCCTTGTAGGTTGGTGAAAGGACCACAGTACACAGGTTCTGATGATGTGGCAATGAACTTCGTAAAGATAGATGATGAAAGGGAGTACATTGTGGATTTAATGGCAGATCCCGGCACACTTATTCCAGCTGATGTTGCTGGATTGCATGTAGATGATGAATCCCCCTTTTCAGCCAGTCCACTTTCTAGAGATGTTGATTCCTCTCAGGCAGCCTCTTCAAGCAGTGGGGTTGGTAGTTCATTGGAGGAAAATTCAGATTTTGGGACATCAGACAGGAAACCAAAGTCCCAAAATTTCAGTGCCACAAAGGAACATGATTCTCCCAACGTAGACAAGGGGCTATCACGCGAATTTTCTAGACAACCAATTTATTCTGGCATGCACGTTAGATCACCATCTTGGACTGAGGGTGTTAGTTCGCCTGCAGTGCGCAGAATGAAAGTGAAGGATGTTTCTCAATACATGATTGATGCTGCAAAAGAGAATCCACGATTGGCTCAGAAGCTTCATGATGTGTTGCTTGAAAGTGGTGTAGTTGCACCGCCGAACTTGTTTACCGAGGCATACCCAGACCAAATAGATGTAATTGTTGAGTCGAAGCCGCCAATTGAGGACACGGATCAAAATAGAATGGTGCCTGCTCTCTGCAAAAGTGTAGACAAGAAAGATCCTCGTCCAGCTAACTTCTTGCCTCCCTTGCCTCAACCCAAACTGCATTCTAAAGTAAGCCCTCCCCATGGCCAACATCTTAAACCTCCTTACCTCTCTCTTGATTCAAGAGAAGCAGCCGGTCAACCTACAGTCTTACCATTTGAGGTAACTCCAGTGAAGTATGTGAGAAATGTACCTGTTGCCGCTGCTGCAGCCGCTGCAGCAGCTGTTGTTGCATCATCAATGGTAGTAGCTGCAGCAAAGAGCACGGATGCAAATCTTGAAATTCCTGTAGCAGCTGCTGCTACTGCCACTGCTGCTGCAGTGGTTGCAACAACTGCAGCAGTCAACAAGCAGTATGAGCAAGTTGAGGCTGATGCCACTCTTTTTGAGCAACGTGGAAGTGGAGATAGGGAGCACGATGCTTATGGAGAAAATTCAGAGGGTGAACGAATATCAGATAGATCAGCAGGAAATGAAAGCACGAAATCTGATATGACCCTTGACGATGTTGCAGAATGCGAGATCCCATGGGACGAAATCTCCATGGGAGAGCGTATTGGCCTTGGGTCTTATGGGGAGGTGTATCATGGAGATTGGCATGGAACTGAGGTAGCGGTTAAGAGGTTTCTAAACCAGGATATTTCTGGTGATTCTCTTGAAGAATTCAAAAGTGAGGTTCGAATTATGAAAAGGCTTCGGCATCCAAATGTTGTTCTCTTCATGGGAGCTGTCACTCGTGCTCCAAATCTTTCGATCGTTACAGAATTTCTTCCCAGAGGTAGCCTGTACAGGTTAATTCACCGTCCCAACAATCAATTAGATGAACGAAAGCGATTGAGAATGGCCCTTGATGCAGCTCGGGGAATGAATTATTTGCACAGTAGCACACCTGTTATTGTACATCGCGATTTGAAGTCCCCAAATCTTCTCGTTGATAAAAATTGGGTTGTGAAGGTATGTGATTTTGGTTTATCAAAAATGAAGCATAGCACATTTCTTTCTTCAAGGTCAACAGCTGGAACGGCTGAGTGGATGGCTCCAGAAGTGTTGAGAAATGAACCTTCAGATGAAAAGTGTGATGTTTATAGTTATGGAGTCATACTATGGGAGCTTTCAACAATGCAACAACCATGGGGAGGAATGAACCCAATGCAAGTTGTTGGCGCTGTTGGCTTTCAGCATCGCCGTCTTGACATCCCAGACACTATGGATCCTGCCATTGCCGACATTATTAAGAAATGCTGGGAAACAGATCCAAGATTAAGACCTTCATTTGCTGAGATCATGGCTGCACTAAAGCCGCTACAGAAGCCAATGTCAAGTTCTCAAGTACCAAGACCGAATGCTTCTAGTGGTCGAGAGAAGGCTCGATTATCGCAAGTTTCTAAAGACCCATCAGGCTAG 2997 45.61 MKNLLKKFHIMSSGQSDDGAEGSTSTRGGKVVEDSSSRSRPTHFNSEHKPFSGISNWLNSVTNRRSPSPPLSSNPGIGAIMEATDSVSSRDAAMDTSRHDSGSSNSRDPDVEEEYQIQLALEMSAREDPEAAQIEAVKQISLGTCDPDNTPAEVIAFRYWNYNSLSYDDKIMDGFYDLYGVFAESTSERMPSLVDLQGAPMSDNVTWEAVLINKAADANLLKLEQTALEMAIKTRSESPSSVNSLVRKLAILVSDHMGGRVGDPEKMLRKWRSLSHSLKATLGSMVLPLGSLTLGLARHRALLFKLLADGVDIPCRLVKGPQYTGSDDVAMNFVKIDDEREYIVDLMADPGTLIPADVAGLHVDDESPFSASPLSRDVDSSQAASSSSGVGSSLEENSDFGTSDRKPKSQNFSATKEHDSPNVDKGLSREFSRQPIYSGMHVRSPSWTEGVSSPAVRRMKVKDVSQYMIDAAKENPRLAQKLHDVLLESGVVAPPNLFTEAYPDQIDVIVESKPPIEDTDQNRMVPALCKSVDKKDPRPANFLPPLPQPKLHSKVSPPHGQHLKPPYLSLDSREAAGQPTVLPFEVTPVKYVRNVPVAAAAAAAAAVVASSMVVAAAKSTDANLEIPVAAAATATAAAVVATTAAVNKQYEQVEADATLFEQRGSGDREHDAYGENSEGERISDRSAGNESTKSDMTLDDVAECEIPWDEISMGERIGLGSYGEVYHGDWHGTEVAVKRFLNQDISGDSLEEFKSEVRIMKRLRHPNVVLFMGAVTRAPNLSIVTEFLPRGSLYRLIHRPNNQLDERKRLRMALDAARGMNYLHSSTPVIVHRDLKSPNLLVDKNWVVKVCDFGLSKMKHSTFLSSRSTAGTAEWMAPEVLRNEPSDEKCDVYSYGVILWELSTMQQPWGGMNPMQVVGAVGFQHRRLDIPDTMDPAIADIIKKCWETDPRLRPSFAEIMAALKPLQKPMSSSQVPRPNASSGREKARLSQVSKDPSG 998
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12837417 12850926 + Sed0027543.1 Sed01g1761 701065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1761 998 ProSiteProfiles Protein kinase domain profile. 711 967 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1761 998 Pfam Protein tyrosine and serine/threonine kinase 712 963 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g1761 998 MobiDBLite consensus disorder prediction 660 699 - -
Sed01g1761 998 Gene3D Phosphorylase Kinase; domain 1 704 788 - -
Sed01g1761 998 SMART serkin_6 711 966 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1761 998 MobiDBLite consensus disorder prediction 369 430 - -
Sed01g1761 998 PRINTS Tyrosine kinase catalytic domain signature 890 912 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g1761 998 PRINTS Tyrosine kinase catalytic domain signature 785 798 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g1761 998 PRINTS Tyrosine kinase catalytic domain signature 934 956 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g1761 998 PRINTS Tyrosine kinase catalytic domain signature 871 881 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g1761 998 PRINTS Tyrosine kinase catalytic domain signature 824 842 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g1761 998 MobiDBLite consensus disorder prediction 16 32 - -
Sed01g1761 998 MobiDBLite consensus disorder prediction 373 409 - -
Sed01g1761 998 CDD STKc_MAP3K-like 717 963 - -
Sed01g1761 998 MobiDBLite consensus disorder prediction 86 112 - -
Sed01g1761 998 PANTHER SERINE-THREONINE PROTEIN KINASE 94 964 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Sed01g1761 998 Pfam Ethylene-responsive protein kinase Le-CTR1 152 354 - -
Sed01g1761 998 MobiDBLite consensus disorder prediction 533 567 - -
Sed01g1761 998 ProSitePatterns Serine/Threonine protein kinases active-site signature. 830 842 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g1761 998 MobiDBLite consensus disorder prediction 967 998 - -
Sed01g1761 998 SUPERFAMILY Protein kinase-like (PK-like) 694 962 IPR011009 -
Sed01g1761 998 ProSitePatterns Protein kinases ATP-binding region signature. 717 738 IPR017441 GO:0005524(InterPro)
Sed01g1761 998 MobiDBLite consensus disorder prediction 92 112 - -
Sed01g1761 998 FunFam Serine/threonine-protein kinase CTR1 790 973 - -
Sed01g1761 998 MobiDBLite consensus disorder prediction 10 54 - -
Sed01g1761 998 Gene3D Transferase(Phosphotransferase) domain 1 790 975 - -
Sed01g1761 998 MobiDBLite consensus disorder prediction 661 688 - -
Sed01g1761 998 FunFam Serine/threonine-protein kinase isoform 1 702 789 - -
Sed01g1761 998 MobiDBLite consensus disorder prediction 410 426 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1761 Sed-Chr1:12837417 Sed13g1856 Sed-Chr13:23515876 3.40E-185 dispersed
Sed01g1761 Sed-Chr1:12837417 Sed11g1836 Sed-Chr11:33151905 1.20E-185 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78627 PF07714 PK_Tyr_Ser-Thr 1.50E-67 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1761 - - - 0.0