Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1765 ATGTGGATGATGGGTTACAATGAGGGTGGAGATTTGAACTTTGGTTCTGATTCATTCAATGGTCGAAAACTTAGGACTTTAATTCCTCGCCCTATTCCTTCTCTTTCCACTTCTTCTTCTTCTTCATCATCTAACACTGTCAATCCTCCTTTGAATCTTATCCACACCAACGATTTCTTCTCTCAATTTCATCACATGGCGACGGATCAGAGCAAGAGAGAGTTGAATAATGTGCACTCCCCGCCTGTGGTGGTCAGCTCGCGGTGGAATCCAACCCCGGAGCAGTTGAGGTTGCTCGAAGAATTGTATCGACGGGGGACTCGAACGCCGTCTGCAGATCAAATTCAACATATTACTGCACAGCTTCGTCGCTTTGGTAAGATTGAAGGTAAGAATGTGTTCTACTGGTTTCAGAATCACAAAGCGAGAGAGCGACAGAAACGCCGCCGACAGATGGAATGTGCTGACCACTCCACTCTCGATGTCGAAATCCTCGACAGGAGAGATTCAGAGTCGGGTAGGACAGCCTATGAAGTTGAGCTGACCAAAAACTGGCCTCCCTCTACGAACTGCACCACTACACTTGTGGAGGAAACCATTCCAATTCAAAGGGCAGCAAAAGCTAGTCTAATGGCAGCAGGGGTGGAAAATGGATGGCTTCAATTTGAGGATCAATTACACCAAACAAGGAATAACAACAATAACTTTGGTGAAAAGAATAATAACAACAATGGAGCTAGCTCCTTGCAGTTGAACCATTGCTCCGCTGCGGCTCGTGGCGGTGGAGGTGTCGGGGGTGAGCAACTGATGATGAGCTCAACCCCCATCAGCACCACAGCCACAGTTACAACAACAATAATGCACCAAAAATCAATCTTTGTTGGAGGCTACACACAAAATGGGGTTGAAGACCAATTGCAAGAATTAGGAGAAGAATGTGGGGAGTCAGCTGAAACCCTTCAACTTTTTCCATTGTGCAGTGAGACAAGAAATGGAGAGATAATTGGAGGAAAAAATGGAAGTGAATTAATAGTGGAAAATTCAGGAATGAATAGTAATAATCTGACTCCACTTCACTTCTTTGAATTCCTTCCATTGAAGAATTGA 1107 44.81 MWMMGYNEGGDLNFGSDSFNGRKLRTLIPRPIPSLSTSSSSSSSNTVNPPLNLIHTNDFFSQFHHMATDQSKRELNNVHSPPVVVSSRWNPTPEQLRLLEELYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKRRRQMECADHSTLDVEILDRRDSESGRTAYEVELTKNWPPSTNCTTTLVEETIPIQRAAKASLMAAGVENGWLQFEDQLHQTRNNNNNFGEKNNNNNGASSLQLNHCSAAARGGGGVGGEQLMMSSTPISTTATVTTTIMHQKSIFVGGYTQNGVEDQLQELGEECGESAETLQLFPLCSETRNGEIIGGKNGSELIVENSGMNSNNLTPLHFFEFLPLKN 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12883188 12886687 - Sed0005608.1 Sed01g1765 701069

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1765 368 SUPERFAMILY Homeodomain-like 87 153 IPR009057 -
Sed01g1765 368 CDD homeodomain 88 148 IPR001356 GO:0003677(InterPro)
Sed01g1765 368 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 80 363 IPR044555 GO:0003700(InterPro)|GO:0099402(InterPro)
Sed01g1765 368 Pfam Homeodomain 87 146 IPR001356 GO:0003677(InterPro)
Sed01g1765 368 ProSiteProfiles 'Homeobox' domain profile. 92 147 IPR001356 GO:0003677(InterPro)
Sed01g1765 368 Gene3D - 85 147 - -
Sed01g1765 368 SMART HOX_1 84 151 IPR001356 GO:0003677(InterPro)
Sed01g1765 368 FunFam WUSCHEL-related homeobox 4 86 153 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1765 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1765 Sed-Chr1:12883188 Sed11g0934 Sed-Chr11:23538013 2.70E-23 dispersed
Sed05g2913 Sed-Chr5:40071573 Sed01g1765 Sed-Chr1:12883188 3.50E-22 transposed
Sed11g2169 Sed-Chr11:35458838 Sed01g1765 Sed-Chr1:12883188 6.00E-22 transposed
Sed01g1765 Sed-Chr1:12883188 Sed12g2115 Sed-Chr12:31821764 1.30E-38 wgd
Sed01g1765 Sed-Chr1:12883188 Sed08g2754 Sed-Chr8:39203507 3.80E-110 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed01g1765 . 1 193 Wox Gene Family AT3G18010 53.8 1.1e-45 181.8
Sed08g2754 . 1 204 Wox Gene Family AT3G18010 50.9 2.4e-45 180.6
Sed04g1018 . 1 268 Wox Gene Family AT4G35550 51.7 7.5e-71 265.0
Sed04g1016 . 1 268 Wox Gene Family AT4G35550 51.7 7.5e-71 265.0
Sed04g1017 . 1 268 Wox Gene Family AT4G35550 51.7 7.5e-71 265.0
Sed01g2423 . 1 162 Wox Gene Family AT4G35550 64.8 5.4e-53 205.7
Sed11g0934 . 5 158 Wox Gene Family AT1G46480 67.1 8.0e-51 198.0
Sed10g1226 . 1 155 Wox Gene Family AT1G46480 64.5 7.5e-49 191.4
Sed10g0273 . 1 376 Wox Gene Family AT2G33880 50.6 3.5e-69 260.0
Sed01g1765 . 1 193 Wox Gene Family AT3G18010 53.8 1.1e-45 181.8
Sed08g2754 . 1 204 Wox Gene Family AT3G18010 50.9 2.4e-45 180.6
Sed11g0934 . 5 158 Wox Gene Family AT1G46480 67.1 8.0e-51 198.0
Sed10g1226 . 1 155 Wox Gene Family AT1G46480 64.5 7.5e-49 191.4
Sed10g0273 . 1 376 Wox Gene Family AT2G33880 50.6 3.5e-69 260.0
Sed04g1018 . 1 268 Wox Gene Family AT4G35550 51.7 7.5e-71 265.0
Sed04g1016 . 1 268 Wox Gene Family AT4G35550 51.7 7.5e-71 265.0
Sed04g1017 . 1 268 Wox Gene Family AT4G35550 51.7 7.5e-71 265.0
Sed01g2423 . 1 162 Wox Gene Family AT4G35550 64.8 5.4e-53 205.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004252 3 1 2 3 2 1 2 1 1 1 1 1 3 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37219 PF00046 Homeodomain 5.10E-19 CL0123 Sed TF