Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1765 ATGTGGATGATGGGTTACAATGAGGGTGGAGATTTGAACTTTGGTTCTGATTCATTCAATGGTCGAAAACTTAGGACTTTAATTCCTCGCCCTATTCCTTCTCTTTCCACTTCTTCTTCTTCTTCATCATCTAACACTGTCAATCCTCCTTTGAATCTTATCCACACCAACGATTTCTTCTCTCAATTTCATCACATGGCGACGGATCAGAGCAAGAGAGAGTTGAATAATGTGCACTCCCCGCCTGTGGTGGTCAGCTCGCGGTGGAATCCAACCCCGGAGCAGTTGAGGTTGCTCGAAGAATTGTATCGACGGGGGACTCGAACGCCGTCTGCAGATCAAATTCAACATATTACTGCACAGCTTCGTCGCTTTGGTAAGATTGAAGGTAAGAATGTGTTCTACTGGTTTCAGAATCACAAAGCGAGAGAGCGACAGAAACGCCGCCGACAGATGGAATGTGCTGACCACTCCACTCTCGATGTCGAAATCCTCGACAGGAGAGATTCAGAGTCGGGTAGGACAGCCTATGAAGTTGAGCTGACCAAAAACTGGCCTCCCTCTACGAACTGCACCACTACACTTGTGGAGGAAACCATTCCAATTCAAAGGGCAGCAAAAGCTAGTCTAATGGCAGCAGGGGTGGAAAATGGATGGCTTCAATTTGAGGATCAATTACACCAAACAAGGAATAACAACAATAACTTTGGTGAAAAGAATAATAACAACAATGGAGCTAGCTCCTTGCAGTTGAACCATTGCTCCGCTGCGGCTCGTGGCGGTGGAGGTGTCGGGGGTGAGCAACTGATGATGAGCTCAACCCCCATCAGCACCACAGCCACAGTTACAACAACAATAATGCACCAAAAATCAATCTTTGTTGGAGGCTACACACAAAATGGGGTTGAAGACCAATTGCAAGAATTAGGAGAAGAATGTGGGGAGTCAGCTGAAACCCTTCAACTTTTTCCATTGTGCAGTGAGACAAGAAATGGAGAGATAATTGGAGGAAAAAATGGAAGTGAATTAATAGTGGAAAATTCAGGAATGAATAGTAATAATCTGACTCCACTTCACTTCTTTGAATTCCTTCCATTGAAGAATTGA 1107 44.81 MWMMGYNEGGDLNFGSDSFNGRKLRTLIPRPIPSLSTSSSSSSSNTVNPPLNLIHTNDFFSQFHHMATDQSKRELNNVHSPPVVVSSRWNPTPEQLRLLEELYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKRRRQMECADHSTLDVEILDRRDSESGRTAYEVELTKNWPPSTNCTTTLVEETIPIQRAAKASLMAAGVENGWLQFEDQLHQTRNNNNNFGEKNNNNNGASSLQLNHCSAAARGGGGVGGEQLMMSSTPISTTATVTTTIMHQKSIFVGGYTQNGVEDQLQELGEECGESAETLQLFPLCSETRNGEIIGGKNGSELIVENSGMNSNNLTPLHFFEFLPLKN 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12883188 12886687 - Sed0005608.1 Sed01g1765 701069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1765 368 SUPERFAMILY Homeodomain-like 87 153 IPR009057 -
Sed01g1765 368 CDD homeodomain 88 148 IPR001356 GO:0003677(InterPro)
Sed01g1765 368 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 80 363 IPR044555 GO:0003700(InterPro)|GO:0099402(InterPro)
Sed01g1765 368 Pfam Homeodomain 87 146 IPR001356 GO:0003677(InterPro)
Sed01g1765 368 ProSiteProfiles 'Homeobox' domain profile. 92 147 IPR001356 GO:0003677(InterPro)
Sed01g1765 368 Gene3D - 85 147 - -
Sed01g1765 368 SMART HOX_1 84 151 IPR001356 GO:0003677(InterPro)
Sed01g1765 368 FunFam WUSCHEL-related homeobox 4 86 153 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1765 Sed-Chr1:12883188 Sed11g0934 Sed-Chr11:23538013 2.70E-23 dispersed
Sed05g2913 Sed-Chr5:40071573 Sed01g1765 Sed-Chr1:12883188 3.50E-22 transposed
Sed11g2169 Sed-Chr11:35458838 Sed01g1765 Sed-Chr1:12883188 6.00E-22 transposed
Sed01g1765 Sed-Chr1:12883188 Sed12g2115 Sed-Chr12:31821764 1.30E-38 wgd
Sed01g1765 Sed-Chr1:12883188 Sed08g2754 Sed-Chr8:39203507 3.80E-110 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37219 PF00046 Homeodomain 5.10E-19 CL0123 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1765 - - - 0.0