Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1779 ATGGCGAATCCTTTAATTCCTCTGTTTCTCTTCATTTTCTTCCTTCTTCTGCGCACTGCGAAGCTAGATCTTGCTTCCGATCGAACTGCTCTTTTGGCCCTCCGTTCCGCCGTGCGTGGCCGGACTCTTCGCCTCTGGAATGTCTCCGATCAGAACCCCTGTTCTTGGTCGGGAATTCAATGCCAGGACGATCGTGTTACTGTTCTTCGCCTTCCCGGCGAGGCCCTTTCCGGCCAATTGCCCATTGGGGTTTTTGGGAATTTGACAAATCTTCGCACTCTCAGCCTTCGCCTCAATGCGCTTTCCGGTCACATTCCGGCAGATCTCTCCGCCTGTGCTGATCTTCGTAATCTATACTTGCAAGGTAATGAGTTTTCAGGCCCTGTTCCTGATTTCTTGTTCAAGCTTAATGACCTTGTTCGTCTTAATTTGGCTTCCAATAACTTTTCTGGCCAGATCTCATCTGGGTTCAACAATTTGACCCGTCTAAGGACTTTGTTTCTCGAGAATAATCAACTATCTGGGTCTATCCCTGATTTGAAGATCCCTCTGGATCAGTTTAACGTTTCTAATAATCTGTTGAATGGGTCGGTTCCTAAGGGATTGCAGTCGTTTTCTTCGAATTCGTTTTTGGGGAATTCTCTATGTGGGCGTCCTTTTGAGGTTTGTTCGGGTGATATTACTCTGCCAGCAGGGGAGATTAGGGACAATGATAAGAAAAGGCTTTCTGGGGGAGCCATTGCTGGGATTGTTATTGGGTCTGTATTAGTTTTTATATTGATAATTGTAATCTTTATGCTTTTGTGTCGAAAGAAGAGTGTGAAGAAGACAAGTTCAATAGATGTTGCTACAGTGAAGCAAACTGAGGTTGAAATTCAGGACAGTAAGCCACCAGGGGAGATTGAAAATGGTGGTTACAGTAATGGTTATACCGTTCCTGCCGTGGCGGCGGCAACCGTGGTGGCATCTGGGACTGCAAAAGGGGAAGTGAATGGCACTGAAACTGGGAGTAAAAAATTGGTGTTTTTTGGCAATGCTGCAAAGGTATTTGATTTGGAGGATCTTTTGAGAGCTTCAGCAGAAGTGTTGGGGAAAGGAACATTTGGAACTGCTTATAAAGCAATTATGGAAGTGGGTTCTGTGGTGGCTGTGAAGAGGTTGAAGGATGTTACCATAACAGAGAAGGAATTTAGAGACAAGATTGAAGCTGTTGGATCTATGGATCATGAGAATTTGATCCCTCTTAGGGCTTACTATTTCAGTAGGGATGAGAAGCTTCTTGTGTTTGATTACATGGCCATGGGAAGCTTATCTGCTCTATTACATGGAAACAAAGGAGCTGGTAGGACTCCATTGAACTGGGAAATCAGGTCTGGCATTGCCCTTGGTGCTGCTCGTGGCATTGAATATCTGCATTCTCAAGGCCCTAACGTTTCCCACGGAAACATAAAATCATCCAACATTCTTTTATCGAAATCCTACGATGCCCGAGTCTCCGATTTTGGTTTAGCACATCTTGTTGGACCACCTTCCAGCCCCAACAGAGTTGCTGGATATCGCGCACCGGAGGTCACTGATCCTCGTAAAGTATCCCAGAAGGCTGACATCTATAGCTTTGGCGTATTGCTCTTGGAGCTTTTGACAGGAAAGGCTCCTACTCACTCCTTTTTAAACGAGGAAGGAATCGATTTACCCAGATGGGTGCAGTCAGTTGTTAGAGAGGAGTGGACGTCCGAAGTTTTCGACCTCGAGCTTCTTAGGTACCAAAATGTTGAGGAGGAGATGGTTCAACTATTGCAGCTTGCAGTCGATTGTGCAGCTCAGTATCCTGATAAGCGCCCCACAATGCCCGAAGTCAGGAAACGTATAGAAGAGCTTCGCCAATCCAGCATTCACGAGGTTGCCAATCCACAACCCGACACTGCTCATGATTTGGACGACGTATCTTCTAGGTGA 1956 45.96 MANPLIPLFLFIFFLLLRTAKLDLASDRTALLALRSAVRGRTLRLWNVSDQNPCSWSGIQCQDDRVTVLRLPGEALSGQLPIGVFGNLTNLRTLSLRLNALSGHIPADLSACADLRNLYLQGNEFSGPVPDFLFKLNDLVRLNLASNNFSGQISSGFNNLTRLRTLFLENNQLSGSIPDLKIPLDQFNVSNNLLNGSVPKGLQSFSSNSFLGNSLCGRPFEVCSGDITLPAGEIRDNDKKRLSGGAIAGIVIGSVLVFILIIVIFMLLCRKKSVKKTSSIDVATVKQTEVEIQDSKPPGEIENGGYSNGYTVPAVAAATVVASGTAKGEVNGTETGSKKLVFFGNAAKVFDLEDLLRASAEVLGKGTFGTAYKAIMEVGSVVAVKRLKDVTITEKEFRDKIEAVGSMDHENLIPLRAYYFSRDEKLLVFDYMAMGSLSALLHGNKGAGRTPLNWEIRSGIALGAARGIEYLHSQGPNVSHGNIKSSNILLSKSYDARVSDFGLAHLVGPPSSPNRVAGYRAPEVTDPRKVSQKADIYSFGVLLLELLTGKAPTHSFLNEEGIDLPRWVQSVVREEWTSEVFDLELLRYQNVEEEMVQLLQLAVDCAAQYPDKRPTMPEVRKRIEELRQSSIHEVANPQPDTAHDLDDVSSR 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13018392 13021817 - Sed0000716.1 Sed01g1779 701083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1779 651 Gene3D Ribonuclease Inhibitor 26 135 IPR032675 -
Sed01g1779 651 Pfam Leucine Rich Repeat 139 160 IPR001611 GO:0005515(InterPro)
Sed01g1779 651 Pfam Leucine Rich Repeat 162 179 IPR001611 GO:0005515(InterPro)
Sed01g1779 651 Gene3D Phosphorylase Kinase; domain 1 324 431 - -
Sed01g1779 651 SUPERFAMILY L domain-like 41 207 - -
Sed01g1779 651 CDD TM_EGFR-like 243 276 - -
Sed01g1779 651 ProSitePatterns Protein kinases ATP-binding region signature. 363 385 IPR017441 GO:0005524(InterPro)
Sed01g1779 651 ProSiteProfiles Protein kinase domain profile. 357 635 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1779 651 SUPERFAMILY Protein kinase-like (PK-like) 361 633 IPR011009 -
Sed01g1779 651 Pfam Leucine rich repeat N-terminal domain 25 61 IPR013210 -
Sed01g1779 651 PANTHER OS05G0588300 PROTEIN 6 636 IPR050994 -
Sed01g1779 651 FunFam Probable inactive receptor kinase At1g48480 432 634 - -
Sed01g1779 651 Pfam Protein kinase domain 361 620 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1779 651 FunFam Probable inactive receptor kinase RLK902 24 181 - -
Sed01g1779 651 Gene3D Ribonuclease Inhibitor 136 223 IPR032675 -
Sed01g1779 651 FunFam pollen receptor-like kinase 1 326 431 - -
Sed01g1779 651 Pfam Leucine rich repeat 79 124 IPR001611 GO:0005515(InterPro)
Sed01g1779 651 MobiDBLite consensus disorder prediction 629 651 - -
Sed01g1779 651 Gene3D Transferase(Phosphotransferase) domain 1 432 647 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1779 Sed-Chr1:13018392 Sed08g0731 Sed-Chr8:5339585 2.80E-124 dispersed
Sed01g2972 Sed-Chr1:26982619 Sed01g1779 Sed-Chr1:13018392 7.10E-25 transposed
Sed05g2696 Sed-Chr5:38355047 Sed01g1779 Sed-Chr1:13018392 1.50E-162 transposed
Sed07g2734 Sed-Chr7:42491058 Sed01g1779 Sed-Chr1:13018392 1.40E-50 transposed
Sed08g1995 Sed-Chr8:34311587 Sed01g1779 Sed-Chr1:13018392 3.80E-214 transposed
Sed01g1779 Sed-Chr1:13018392 Sed12g2137 Sed-Chr12:31974919 5.10E-65 wgd
Sed01g1779 Sed-Chr1:13018392 Sed08g2770 Sed-Chr8:39295344 5.70E-266 wgd
Sed01g1779 Sed-Chr1:13018392 Sed08g0426 Sed-Chr8:2616673 1.80E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78628 PF00069 Pkinase 1.20E-39 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1779 - - - 0.0