Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1782 ATGGTGCGTGATCGCCGCCAGTTAAACCTCCGCCTCCCACTCCCGGACCTCTCCGACGGCCGTCACCGTTTTCACCTCCCCCTCCCTCCCGCCGCCTCCTCCTCCGCCGCCTCCCCCGCCATCTCCTCCTCCGACCTCGACAATCTCCAAGTCCTCGGCCACGGCAACGGCGGCACCGTCTACAAAGTCCGCCACAACCGCACCTCCGCCACGTACGCTCTCAAACTCGTCCACGCCGGCTCCGATCCCGCCGTCCGCCGCCAAATTTTCCGAGAGATGGAGATCCTCCGCCGCACGGACTCACCGTACGTCGTCCAGTGCCACGGAATTTTCGAGAAACCGTCCGGAGACGTGTCGATCTTGATGGAGTACATGGATCTCGGATCGCTCGATTCGCTCCTGAAGAAGCGCTCCACGTTGCCGGAGGCGACGCTCGCACACGTCTCGCGCCAGGTACTGAACGGCCTCCATTACCTCCACTCTCTTAAAATCGTTCATCGCGATATCAAACCGTCGAATCTGCTGGTGAATAAGAACATGGAGGTTAAAATCGCCGATTTCGGAGTTAGTAAAATCATGTGCAGGACTCTGGATGCTTGCAATTCCTACGTCGGAACCTCCGCTTACATGAGTCCGGAGCGATTCGATCCGGACTCTTACGGCGGAAATTACAACGGTTACGCCGCCGATATCTGGAGTTTAGGCCTTACTCTTCTCGAACTCTATTTAGGCCATTTTCCTTTTCTTCCGCCCGGCCAGAGGCCGGATTGGGCGACTCTGATGTGTGCGATTTGCTTCGGCGAGCCGCCGTCGCTGCCGCCGGATGCGTCGGAGGAGTTTCGAAGCTTTGTTGAGTGTTGTTTGCAGAAGGAATCGAGCAAGAGATCGACGGCGGCGCAACTGTTGACGCATCCGTTTGTGTGTAAGGCATCGCCGGCGAAATTAACGGATCTGAATCATTGGTAA 966 57.56 MVRDRRQLNLRLPLPDLSDGRHRFHLPLPPAASSSAASPAISSSDLDNLQVLGHGNGGTVYKVRHNRTSATYALKLVHAGSDPAVRRQIFREMEILRRTDSPYVVQCHGIFEKPSGDVSILMEYMDLGSLDSLLKKRSTLPEATLAHVSRQVLNGLHYLHSLKIVHRDIKPSNLLVNKNMEVKIADFGVSKIMCRTLDACNSYVGTSAYMSPERFDPDSYGGNYNGYAADIWSLGLTLLELYLGHFPFLPPGQRPDWATLMCAICFGEPPSLPPDASEEFRSFVECCLQKESSKRSTAAQLLTHPFVCKASPAKLTDLNHW 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13052435 13053604 - Sed0026356.1 Sed01g1782 701086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1782 321 ProSiteProfiles Protein kinase domain profile. 46 307 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1782 321 SMART serkin_6 46 307 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1782 321 CDD PKc_MAPKK_plant_like 45 311 - -
Sed01g1782 321 FunFam Mitogen-activated protein kinase 2 127 318 - -
Sed01g1782 321 Pfam Protein kinase domain 48 307 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1782 321 FunFam Mitogen-activated protein kinase kinase 1 29 126 - -
Sed01g1782 321 SUPERFAMILY Protein kinase-like (PK-like) 46 312 IPR011009 -
Sed01g1782 321 ProSitePatterns Protein kinases ATP-binding region signature. 52 75 IPR017441 GO:0005524(InterPro)
Sed01g1782 321 Gene3D Phosphorylase Kinase; domain 1 37 120 - -
Sed01g1782 321 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 38 319 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Sed01g1782 321 ProSitePatterns Serine/Threonine protein kinases active-site signature. 164 176 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g1782 321 Gene3D Transferase(Phosphotransferase) domain 1 121 320 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1782 Sed-Chr1:13052435 Sed06g2275 Sed-Chr6:46280110 2.00E-83 dispersed
Sed01g1782 Sed-Chr1:13052435 Sed08g2774 Sed-Chr8:39332288 3.80E-146 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78629 PF00069 Pkinase 1.60E-64 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1782 K20604 - csv:101203133 522.316