Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g1782 | ATGGTGCGTGATCGCCGCCAGTTAAACCTCCGCCTCCCACTCCCGGACCTCTCCGACGGCCGTCACCGTTTTCACCTCCCCCTCCCTCCCGCCGCCTCCTCCTCCGCCGCCTCCCCCGCCATCTCCTCCTCCGACCTCGACAATCTCCAAGTCCTCGGCCACGGCAACGGCGGCACCGTCTACAAAGTCCGCCACAACCGCACCTCCGCCACGTACGCTCTCAAACTCGTCCACGCCGGCTCCGATCCCGCCGTCCGCCGCCAAATTTTCCGAGAGATGGAGATCCTCCGCCGCACGGACTCACCGTACGTCGTCCAGTGCCACGGAATTTTCGAGAAACCGTCCGGAGACGTGTCGATCTTGATGGAGTACATGGATCTCGGATCGCTCGATTCGCTCCTGAAGAAGCGCTCCACGTTGCCGGAGGCGACGCTCGCACACGTCTCGCGCCAGGTACTGAACGGCCTCCATTACCTCCACTCTCTTAAAATCGTTCATCGCGATATCAAACCGTCGAATCTGCTGGTGAATAAGAACATGGAGGTTAAAATCGCCGATTTCGGAGTTAGTAAAATCATGTGCAGGACTCTGGATGCTTGCAATTCCTACGTCGGAACCTCCGCTTACATGAGTCCGGAGCGATTCGATCCGGACTCTTACGGCGGAAATTACAACGGTTACGCCGCCGATATCTGGAGTTTAGGCCTTACTCTTCTCGAACTCTATTTAGGCCATTTTCCTTTTCTTCCGCCCGGCCAGAGGCCGGATTGGGCGACTCTGATGTGTGCGATTTGCTTCGGCGAGCCGCCGTCGCTGCCGCCGGATGCGTCGGAGGAGTTTCGAAGCTTTGTTGAGTGTTGTTTGCAGAAGGAATCGAGCAAGAGATCGACGGCGGCGCAACTGTTGACGCATCCGTTTGTGTGTAAGGCATCGCCGGCGAAATTAACGGATCTGAATCATTGGTAA | 966 | 57.56 | MVRDRRQLNLRLPLPDLSDGRHRFHLPLPPAASSSAASPAISSSDLDNLQVLGHGNGGTVYKVRHNRTSATYALKLVHAGSDPAVRRQIFREMEILRRTDSPYVVQCHGIFEKPSGDVSILMEYMDLGSLDSLLKKRSTLPEATLAHVSRQVLNGLHYLHSLKIVHRDIKPSNLLVNKNMEVKIADFGVSKIMCRTLDACNSYVGTSAYMSPERFDPDSYGGNYNGYAADIWSLGLTLLELYLGHFPFLPPGQRPDWATLMCAICFGEPPSLPPDASEEFRSFVECCLQKESSKRSTAAQLLTHPFVCKASPAKLTDLNHW | 321 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 13052435 | 13053604 | - | Sed0026356.1 | Sed01g1782 | 701086 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g1782 | 321 | ProSiteProfiles | Protein kinase domain profile. | 46 | 307 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed01g1782 | 321 | SMART | serkin_6 | 46 | 307 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed01g1782 | 321 | CDD | PKc_MAPKK_plant_like | 45 | 311 | - | - | |
Sed01g1782 | 321 | FunFam | Mitogen-activated protein kinase 2 | 127 | 318 | - | - | |
Sed01g1782 | 321 | Pfam | Protein kinase domain | 48 | 307 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed01g1782 | 321 | FunFam | Mitogen-activated protein kinase kinase 1 | 29 | 126 | - | - | |
Sed01g1782 | 321 | SUPERFAMILY | Protein kinase-like (PK-like) | 46 | 312 | IPR011009 | - | |
Sed01g1782 | 321 | ProSitePatterns | Protein kinases ATP-binding region signature. | 52 | 75 | IPR017441 | GO:0005524(InterPro) | |
Sed01g1782 | 321 | Gene3D | Phosphorylase Kinase; domain 1 | 37 | 120 | - | - | |
Sed01g1782 | 321 | PANTHER | DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED | 38 | 319 | - | GO:0000165(PANTHER)|GO:0004708(PANTHER) | |
Sed01g1782 | 321 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 164 | 176 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed01g1782 | 321 | Gene3D | Transferase(Phosphotransferase) domain 1 | 121 | 320 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g1782 | Sed-Chr1:13052435 | Sed06g2275 | Sed-Chr6:46280110 | 2.00E-83 | dispersed | |
Sed01g1782 | Sed-Chr1:13052435 | Sed08g2774 | Sed-Chr8:39332288 | 3.80E-146 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
78629 | PF00069 | Pkinase | 1.60E-64 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g1782 | K20604 | - | csv:101203133 | 522.316 |