Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1788 ATGCTGGCTGATCTCTCTTCTCCTTCTCTTCCTTATTTTGATCCTTTGTCTAATTGCTTTGAAAACAATGAATCCAATAACAAAAGAAAAAGAAGACCTGCTGGAACTCCAGACCCAGATGCTGAAGTGGTCTCTCTCTCCCCAAAAACCCTATTGGAATCCGATCGCTACGTATGCGAGATCTGCAATCAAGGGTTTCAGAGAGATCAAAATCTACAAATGCATAGAAGACGACACAAGGTGCCGTGGAAGCTATTGAAGAGGACCGAGGCAGCCGCGACGGTGCGAAAGCGGGTGTTCGTTTGCCCCGAACCGACCTGCTTACACCACAACCCTACTCATGCTTTGGGGGATTTGGTGGGGATAAAGAAGCACTTTAGAAGAAAGCATAGTAACCATAAGCAATGGGTTTGTGAAAAATGCTCTAAAGGATATGCTGTTCAATCTGATTATAAAGCTCATCTCAAAACCTGTGGAACTCGAGGCCATTCATGCGATTGCGGTCGGGTTTTCTCCAGGGTGGAGAGTTTCATAGAACATCAAGACACTTGCAAATTGGGTCATCATCAACAATTAGAAAAAATTCCATCTTTACAACCACCACCATGTTTATCAAGAACAGCTTCAAGTCCAACTCCAAGTCCTTCATCTGATAAAAACTTGAGCTTCTTAAATCAAAACCACAAATTTACTTCAACTCATGCAGACAAATCAGCAACAGCACCAACAACTCCCCAAAAAATAATCAGCCATCACCAAAATTTAGACCTTCAACTTTCCACCAATTCAACTTCCATTCATGTTTCAGTTTCTCCAAAAAGACATGAAAATTACTCAACCCATTTGCAGCTTTCAATTGGGTCTTGCAATTATGGTGAGAAAAGTGATCATTATAATGATGATGAGAAAATTGGAAGTAGATTGGGGTTTTTGAGGCTCAAAGAAGAAGCTAAAGAGCAAATGAAAGTGGCAATGGAAGAAAAGGAAATGGCTGAAGAAGCAAGAAATGAAGCAAAGAAGCAAATTGAAATGGCTGAAAAAGAATTAGCCAATGCTAAAAGAATGAGACAACAAGCTCAAGCTGAGTTACAAAGAGCTCTTGCTTTGAAAGAACAAGCCATCAAGAAAATCAACTCCACCATCCTCCAAATCACTTGCCAAGTTTGTAGGCAACATTTTCATCAATTGCCGAAAATTTGA 1200 40.5 MLADLSSPSLPYFDPLSNCFENNESNNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRTEAAATVRKRVFVCPEPTCLHHNPTHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDTCKLGHHQQLEKIPSLQPPPCLSRTASSPTPSPSSDKNLSFLNQNHKFTSTHADKSATAPTTPQKIISHHQNLDLQLSTNSTSIHVSVSPKRHENYSTHLQLSIGSCNYGEKSDHYNDDEKIGSRLGFLRLKEEAKEQMKVAMEEKEMAEEARNEAKKQIEMAEKELANAKRMRQQAQAELQRALALKEQAIKKINSTILQITCQVCRQHFHQLPKI 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13117074 13119922 - Sed0013208.1 Sed01g1788 701092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1788 399 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 22 365 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Sed01g1788 399 SMART c2h2final6 136 163 IPR013087 -
Sed01g1788 399 SMART c2h2final6 100 130 IPR013087 -
Sed01g1788 399 SMART c2h2final6 57 79 IPR013087 -
Sed01g1788 399 MobiDBLite consensus disorder prediction 195 223 - -
Sed01g1788 399 MobiDBLite consensus disorder prediction 21 44 - -
Sed01g1788 399 Gene3D Classic Zinc Finger 45 132 - -
Sed01g1788 399 MobiDBLite consensus disorder prediction 202 223 - -
Sed01g1788 399 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Sed01g1788 399 FunFam protein indeterminate-domain 12-like 36 106 - -
Sed01g1788 399 SUPERFAMILY beta-beta-alpha zinc fingers 56 156 IPR036236 -
Sed01g1788 399 Coils Coil 311 376 - -
Sed01g1788 399 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 135 159 - -
Sed01g1788 399 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 96 130 - -
Sed01g1788 399 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1788 Sed-Chr1:13117074 Sed08g2009 Sed-Chr8:34413558 1.20E-112 dispersed
Sed01g1788 Sed-Chr1:13117074 Sed08g2777 Sed-Chr8:39353235 7.80E-149 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37226 None None None None Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1788 K25871 - csv:101210748 630.172