Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g1788 | ATGCTGGCTGATCTCTCTTCTCCTTCTCTTCCTTATTTTGATCCTTTGTCTAATTGCTTTGAAAACAATGAATCCAATAACAAAAGAAAAAGAAGACCTGCTGGAACTCCAGACCCAGATGCTGAAGTGGTCTCTCTCTCCCCAAAAACCCTATTGGAATCCGATCGCTACGTATGCGAGATCTGCAATCAAGGGTTTCAGAGAGATCAAAATCTACAAATGCATAGAAGACGACACAAGGTGCCGTGGAAGCTATTGAAGAGGACCGAGGCAGCCGCGACGGTGCGAAAGCGGGTGTTCGTTTGCCCCGAACCGACCTGCTTACACCACAACCCTACTCATGCTTTGGGGGATTTGGTGGGGATAAAGAAGCACTTTAGAAGAAAGCATAGTAACCATAAGCAATGGGTTTGTGAAAAATGCTCTAAAGGATATGCTGTTCAATCTGATTATAAAGCTCATCTCAAAACCTGTGGAACTCGAGGCCATTCATGCGATTGCGGTCGGGTTTTCTCCAGGGTGGAGAGTTTCATAGAACATCAAGACACTTGCAAATTGGGTCATCATCAACAATTAGAAAAAATTCCATCTTTACAACCACCACCATGTTTATCAAGAACAGCTTCAAGTCCAACTCCAAGTCCTTCATCTGATAAAAACTTGAGCTTCTTAAATCAAAACCACAAATTTACTTCAACTCATGCAGACAAATCAGCAACAGCACCAACAACTCCCCAAAAAATAATCAGCCATCACCAAAATTTAGACCTTCAACTTTCCACCAATTCAACTTCCATTCATGTTTCAGTTTCTCCAAAAAGACATGAAAATTACTCAACCCATTTGCAGCTTTCAATTGGGTCTTGCAATTATGGTGAGAAAAGTGATCATTATAATGATGATGAGAAAATTGGAAGTAGATTGGGGTTTTTGAGGCTCAAAGAAGAAGCTAAAGAGCAAATGAAAGTGGCAATGGAAGAAAAGGAAATGGCTGAAGAAGCAAGAAATGAAGCAAAGAAGCAAATTGAAATGGCTGAAAAAGAATTAGCCAATGCTAAAAGAATGAGACAACAAGCTCAAGCTGAGTTACAAAGAGCTCTTGCTTTGAAAGAACAAGCCATCAAGAAAATCAACTCCACCATCCTCCAAATCACTTGCCAAGTTTGTAGGCAACATTTTCATCAATTGCCGAAAATTTGA | 1200 | 40.5 | MLADLSSPSLPYFDPLSNCFENNESNNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRTEAAATVRKRVFVCPEPTCLHHNPTHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDTCKLGHHQQLEKIPSLQPPPCLSRTASSPTPSPSSDKNLSFLNQNHKFTSTHADKSATAPTTPQKIISHHQNLDLQLSTNSTSIHVSVSPKRHENYSTHLQLSIGSCNYGEKSDHYNDDEKIGSRLGFLRLKEEAKEQMKVAMEEKEMAEEARNEAKKQIEMAEKELANAKRMRQQAQAELQRALALKEQAIKKINSTILQITCQVCRQHFHQLPKI | 399 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 13117074 | 13119922 | - | Sed0013208.1 | Sed01g1788 | 701092 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g1788 | 399 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 22 | 365 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Sed01g1788 | 399 | SMART | c2h2final6 | 136 | 163 | IPR013087 | - | |
Sed01g1788 | 399 | SMART | c2h2final6 | 100 | 130 | IPR013087 | - | |
Sed01g1788 | 399 | SMART | c2h2final6 | 57 | 79 | IPR013087 | - | |
Sed01g1788 | 399 | MobiDBLite | consensus disorder prediction | 195 | 223 | - | - | |
Sed01g1788 | 399 | MobiDBLite | consensus disorder prediction | 21 | 44 | - | - | |
Sed01g1788 | 399 | Gene3D | Classic Zinc Finger | 45 | 132 | - | - | |
Sed01g1788 | 399 | MobiDBLite | consensus disorder prediction | 202 | 223 | - | - | |
Sed01g1788 | 399 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 57 | 79 | IPR013087 | - | |
Sed01g1788 | 399 | FunFam | protein indeterminate-domain 12-like | 36 | 106 | - | - | |
Sed01g1788 | 399 | SUPERFAMILY | beta-beta-alpha zinc fingers | 56 | 156 | IPR036236 | - | |
Sed01g1788 | 399 | Coils | Coil | 311 | 376 | - | - | |
Sed01g1788 | 399 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 135 | 159 | - | - | |
Sed01g1788 | 399 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 96 | 130 | - | - | |
Sed01g1788 | 399 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 59 | 79 | IPR013087 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g1788 | Sed-Chr1:13117074 | Sed08g2009 | Sed-Chr8:34413558 | 1.20E-112 | dispersed | |
Sed01g1788 | Sed-Chr1:13117074 | Sed08g2777 | Sed-Chr8:39353235 | 7.80E-149 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37226 | None | None | None | None | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g1788 | K25871 | - | csv:101210748 | 630.172 |