Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1812 ATGTCTATAGTGGAAGAGAAGCTAGACACAATTGAACCTTCAACAAGAAATTGTGATGAATCAGTGGATGAGAAGGTAGATGAAATTGAACCTTCAACAATGAATAATGATGAGTTGGTGGACGAAGACGAAGAAGAAGAAGAGGAGGACCTTTCATGGTCATCCGACTCTGAGATTGGAGAGGCATTGGACTTGTTGGATTTAAAGGAAGATAACCAAGCATTAGATGGGGCCTTTTCACTCAATGCCAGGCGTCCTAATGCTCATGGCGGGCTTTATTCTCGTCATAATTCCTCGACCCTCCAACCACTCTCAAATCGGAACCAAAGGTTTACCAATCATATTCGAGCTTCACCTCTTGCGGAATGGGAAGGGAGATTTAAATCTGGAATGTCGAACTCTGTTACTACTGCCATTCGTAACAGTGTCAAGGAAATGGCTATAGGAAAAACAAAAACTACGGAGAAAGCAGATCGTGCAACTGTTGAACAGGCTATAGATCCTAGAACTCGGATGGTTTTATTCAAGATGCTCAATCGAGGTGTTTTTCATGACATTAATGGCTGCATTTCTACCGGGAAAGAAGCTAATGTCTATCATGCAACGAAATCTGATGGTCAAGAATTTGCGGTCAAAATCTACAAAACTTCAATTTTGGTGTTTAAGGATAGGGATCGCTATGTCCAAGGTGACTACCGATTCCGACATGGATATTGCAAGCATAATCCCAGGAAAATGGTTAAGACATGGGCTGAAAAGGAAATGAGGAATTTGATGAGGTTAAAAGCTGCAGGAATTAGATGCCCGACTCCTGTCCTCTTGAGACTGCATGTGCTGGTCATGGAGTTCATTGGTAAGACTGGTTGGGCTGCACCTCGTCTTAAAGATGCGGCCTTGTCGTCGAACAGGCTACGTGAAAGTTATTTGGAGATAGTTATTACAATGCGGACCCTCTACCAGAAGTGCAAGCTAGTGCATGGAGATCTTAGTGAATATAACATACTTTATTTTGAGGGTCACCTTTATATTATAGATGTTTCTCAATCTGTTGATCTCGACCACCCGCATGCCCTCGATTTCCTTCGTGAAGATTGTCTTCATGTTTCTGATTTCTTTAAAAAACATGGTGTGGCTGTAATGACAATTCGAGAACTATTTGATTTCATTGTTGATCCATGCCTCACTGATGAGACGATTGATAGTCATCTGGAAGAGATGCAAGAAAAAATCACAGCAAGAGGCGATATATCAGTGGAGGATGAAATAGCAGATTCTGTATTTGTTCAGTCATATATTCCAAAGACACTGGATAGTGTCAAACATGCTGAGGAAGATGTAATACGTTTAACAAGTGGTCAGGACACTGAAGATATGTACTACAAGACTATTACAGGGTTAAAACAGGCCCTTCCAAGAGCTCAACCTGCATCAGAGCTGAAAGATGATGAAGAACACATTGCAGACCAGATCGAACGATCCGAAAATGTAATCAATTTGTCAAATTCTTGTGAGGAAGAGACCGGGTCAGCAGAGGAAGATAATGAGAGCGCGGATGAGTCGGAAGGAGAACCGAGATCTGAAACTGAGATGACACAGGCACCGGTTGACAAGAAAGCTGCGAGAAAAGAGAACAAAAAGAAGGTGAAGGAAGAGAAGAGAGAGGCTCGCAAAACGAAGGTTCCCAAGGCTGTAAAGAAACGAAAGAAGAAGTTGGGCAAGTCCCACAAGTAA 1731 42.23 MSIVEEKLDTIEPSTRNCDESVDEKVDEIEPSTMNNDELVDEDEEEEEEDLSWSSDSEIGEALDLLDLKEDNQALDGAFSLNARRPNAHGGLYSRHNSSTLQPLSNRNQRFTNHIRASPLAEWEGRFKSGMSNSVTTAIRNSVKEMAIGKTKTTEKADRATVEQAIDPRTRMVLFKMLNRGVFHDINGCISTGKEANVYHATKSDGQEFAVKIYKTSILVFKDRDRYVQGDYRFRHGYCKHNPRKMVKTWAEKEMRNLMRLKAAGIRCPTPVLLRLHVLVMEFIGKTGWAAPRLKDAALSSNRLRESYLEIVITMRTLYQKCKLVHGDLSEYNILYFEGHLYIIDVSQSVDLDHPHALDFLREDCLHVSDFFKKHGVAVMTIRELFDFIVDPCLTDETIDSHLEEMQEKITARGDISVEDEIADSVFVQSYIPKTLDSVKHAEEDVIRLTSGQDTEDMYYKTITGLKQALPRAQPASELKDDEEHIADQIERSENVINLSNSCEEETGSAEEDNESADESEGEPRSETEMTQAPVDKKAARKENKKKVKEEKREARKTKVPKAVKKRKKKLGKSHK 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13263286 13269060 - Sed0027713.1 Sed01g1812 701116

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1812 576 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO1 35 576 IPR051272 GO:0004674(PANTHER)
Sed01g1812 576 MobiDBLite consensus disorder prediction 506 520 - -
Sed01g1812 576 MobiDBLite consensus disorder prediction 559 576 - -
Sed01g1812 576 Pfam RIO1 family 197 384 - -
Sed01g1812 576 PIRSF STPK_RIO1 8 576 IPR017407 GO:0004674(InterPro)
Sed01g1812 576 MobiDBLite consensus disorder prediction 34 55 - -
Sed01g1812 576 CDD RIO1_euk 186 375 - -
Sed01g1812 576 SMART rio_2 155 391 IPR000687 GO:0004674(InterPro)|GO:0005524(InterPro)
Sed01g1812 576 MobiDBLite consensus disorder prediction 521 558 - -
Sed01g1812 576 Gene3D Transferase(Phosphotransferase) domain 1 291 432 - -
Sed01g1812 576 MobiDBLite consensus disorder prediction 1 56 - -
Sed01g1812 576 Gene3D Phosphorylase Kinase; domain 1 183 285 - -
Sed01g1812 576 SUPERFAMILY Protein kinase-like (PK-like) 186 371 IPR011009 -
Sed01g1812 576 MobiDBLite consensus disorder prediction 1 32 - -
Sed01g1812 576 MobiDBLite consensus disorder prediction 490 576 - -
Sed01g1812 576 FunFam Serine/threonine-protein kinase RIO1 183 285 - -
Sed01g1812 576 Coils Coil 538 558 - -
Sed01g1812 576 ProSitePatterns RIO1/ZK632.3/MJ0444 family signature. 324 335 IPR018935 GO:0004674(InterPro)|GO:0005524(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1812 K07178 - - csv:101208620 918.687
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g881 . Blo16g00244 . . . . Bma06g00239 . Cmo13g00800 . . . . . . Cpe20g00338 . . . . . . . . . . . . . . . . Cone16ag0055 . . Lsi02g00285 Csa01g00757 Chy12g01210 Cme12g01632 . . Bda11g01629 . . . . . Sed01g1812 . . Cma13g00771 . Car13g00618 . . . Bhi08g01369 Tan05g2119 Cmetu12g0770 Lac10g0339 Hepe07g2309 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007073 1 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 4 1 34