Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1813 ATGCCGCCGAGACAATACGCGGTCGGATGGGCCGATGAGGCTACGCACCCCGACTCCATTCGGGCCACCTTGGCTGAGTTGATTTCCACTTTCATCTTTGTCTTTGCGGGCGAAGGCTCCGTTCTCGCTCTCGATAAAGTTTTCTGGCCGTCGGATCATGGAAGTTACGGTCGTGGGGGTTATGGGTATGATCACGGTTATGGTCGAAGGGGTGGCGACACGGGCCGAGGAGCATCGGAATTAGTAGTGATAGCCATAGCGCATGCATTTGCGTTGTTCTCGGCGGTAGCAGCGAGTATGAACATCTCGGGTGGGCATGTGAATCCTGCAGTAACTTTTGGTGCACTTCTGGGAGGGAGGATATCTCTTATCCGTGCATTCTTCTATTGGGTTGCTCAGATATTGGGGGCAATTGTAGCTTCTCTTCTCTTGAGATTTGCAACCGGTGGCATGAGGCCAATGGGATTCTTCGTGTCATCAGGAATATCAGAACTTCACGGGTTTCTACTAGAAATAGTGCTGACGTTTGCTTTGGTGTACACCGTGTACGCAACGGCCATAGATCCAAAGAGGGGCAGTTTGGGAACAATAGCGCCACTGGCAATCGGGTTAGTGGTCGGGGCGAATATTCTGGTGGGCGGGCCATTCGACGGGGCCTGCATGAACCCGGCCCGGGAATTTGGGCCGTCGTTAGTGGGCTGGAGATGGGACAACCATTGGATCTACTGGATCGGCCCATTACTCGGAGGTGGGCTTGCGGCCCTTGTTTATGAGTATTTGGTGATTCCAGTTGAGCCTCCTCTGCATACTCACCAGCCTTTGGCTCCTGAAGATTACTAA 840 53.21 MPPRQYAVGWADEATHPDSIRATLAELISTFIFVFAGEGSVLALDKVFWPSDHGSYGRGGYGYDHGYGRRGGDTGRGASELVVIAIAHAFALFSAVAASMNISGGHVNPAVTFGALLGGRISLIRAFFYWVAQILGAIVASLLLRFATGGMRPMGFFVSSGISELHGFLLEIVLTFALVYTVYATAIDPKRGSLGTIAPLAIGLVVGANILVGGPFDGACMNPAREFGPSLVGWRWDNHWIYWIGPLLGGGLAALVYEYLVIPVEPPLHTHQPLAPEDY 279
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 13270408 13275903 + Sed0010271.1 Sed01g1813 701117
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1813 279 PANTHER AQUAPORIN-8 6 269 IPR034294 GO:0006833(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
Sed01g1813 279 NCBIfam MIP family channel protein 25 257 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g1813 279 FunFam Probable aquaporin TIP1-1 4 275 - -
Sed01g1813 279 ProSitePatterns MIP family signature. 106 114 IPR022357 -
Sed01g1813 279 Pfam Major intrinsic protein 14 257 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g1813 279 SUPERFAMILY Aquaporin-like 14 270 IPR023271 -
Sed01g1813 279 PRINTS Major intrinsic protein family signature 125 144 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g1813 279 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g1813 279 PRINTS Major intrinsic protein family signature 170 188 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g1813 279 PRINTS Major intrinsic protein family signature 88 112 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g1813 279 PRINTS Major intrinsic protein family signature 240 260 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g1813 279 PRINTS Major intrinsic protein family signature 203 225 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g1813 279 Gene3D Glycerol uptake facilitator protein. 5 265 IPR023271 -
Sed01g1813 279 CDD MIP 21 260 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1813 Sed-Chr1:13270408 Sed03g2041 Sed-Chr3:14307620 1.00E-78 dispersed
Sed01g1813 Sed-Chr1:13270408 Sed08g2597 Sed-Chr8:38329220 9.90E-143 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1813 K09873 - csv:101208863 456.447