Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g1813 | ATGCCGCCGAGACAATACGCGGTCGGATGGGCCGATGAGGCTACGCACCCCGACTCCATTCGGGCCACCTTGGCTGAGTTGATTTCCACTTTCATCTTTGTCTTTGCGGGCGAAGGCTCCGTTCTCGCTCTCGATAAAGTTTTCTGGCCGTCGGATCATGGAAGTTACGGTCGTGGGGGTTATGGGTATGATCACGGTTATGGTCGAAGGGGTGGCGACACGGGCCGAGGAGCATCGGAATTAGTAGTGATAGCCATAGCGCATGCATTTGCGTTGTTCTCGGCGGTAGCAGCGAGTATGAACATCTCGGGTGGGCATGTGAATCCTGCAGTAACTTTTGGTGCACTTCTGGGAGGGAGGATATCTCTTATCCGTGCATTCTTCTATTGGGTTGCTCAGATATTGGGGGCAATTGTAGCTTCTCTTCTCTTGAGATTTGCAACCGGTGGCATGAGGCCAATGGGATTCTTCGTGTCATCAGGAATATCAGAACTTCACGGGTTTCTACTAGAAATAGTGCTGACGTTTGCTTTGGTGTACACCGTGTACGCAACGGCCATAGATCCAAAGAGGGGCAGTTTGGGAACAATAGCGCCACTGGCAATCGGGTTAGTGGTCGGGGCGAATATTCTGGTGGGCGGGCCATTCGACGGGGCCTGCATGAACCCGGCCCGGGAATTTGGGCCGTCGTTAGTGGGCTGGAGATGGGACAACCATTGGATCTACTGGATCGGCCCATTACTCGGAGGTGGGCTTGCGGCCCTTGTTTATGAGTATTTGGTGATTCCAGTTGAGCCTCCTCTGCATACTCACCAGCCTTTGGCTCCTGAAGATTACTAA | 840 | 53.21 | MPPRQYAVGWADEATHPDSIRATLAELISTFIFVFAGEGSVLALDKVFWPSDHGSYGRGGYGYDHGYGRRGGDTGRGASELVVIAIAHAFALFSAVAASMNISGGHVNPAVTFGALLGGRISLIRAFFYWVAQILGAIVASLLLRFATGGMRPMGFFVSSGISELHGFLLEIVLTFALVYTVYATAIDPKRGSLGTIAPLAIGLVVGANILVGGPFDGACMNPAREFGPSLVGWRWDNHWIYWIGPLLGGGLAALVYEYLVIPVEPPLHTHQPLAPEDY | 279 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 13270408 | 13275903 | + | Sed0010271.1 | Sed01g1813 | 701117 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g1813 | 279 | PANTHER | AQUAPORIN-8 | 6 | 269 | IPR034294 | GO:0006833(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER) | |
Sed01g1813 | 279 | NCBIfam | MIP family channel protein | 25 | 257 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed01g1813 | 279 | FunFam | Probable aquaporin TIP1-1 | 4 | 275 | - | - | |
Sed01g1813 | 279 | ProSitePatterns | MIP family signature. | 106 | 114 | IPR022357 | - | |
Sed01g1813 | 279 | Pfam | Major intrinsic protein | 14 | 257 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed01g1813 | 279 | SUPERFAMILY | Aquaporin-like | 14 | 270 | IPR023271 | - | |
Sed01g1813 | 279 | PRINTS | Major intrinsic protein family signature | 125 | 144 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed01g1813 | 279 | PRINTS | Major intrinsic protein family signature | 21 | 40 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed01g1813 | 279 | PRINTS | Major intrinsic protein family signature | 170 | 188 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed01g1813 | 279 | PRINTS | Major intrinsic protein family signature | 88 | 112 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed01g1813 | 279 | PRINTS | Major intrinsic protein family signature | 240 | 260 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed01g1813 | 279 | PRINTS | Major intrinsic protein family signature | 203 | 225 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed01g1813 | 279 | Gene3D | Glycerol uptake facilitator protein. | 5 | 265 | IPR023271 | - | |
Sed01g1813 | 279 | CDD | MIP | 21 | 260 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g1813 | Sed-Chr1:13270408 | Sed03g2041 | Sed-Chr3:14307620 | 1.00E-78 | dispersed | |
Sed01g1813 | Sed-Chr1:13270408 | Sed08g2597 | Sed-Chr8:38329220 | 9.90E-143 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g1813 | K09873 | - | csv:101208863 | 456.447 |