Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1827 ATGGAGGCTGCTGCTGCTTTTGGCCGTCCACGGCCCGTCGTCAAGGTCGAGAAGCTCATCGGAGACGGCGACTCTCCCTCGAAACAAAGTGATCCCCTTGTTAAGGAAGATGAACTAGAATCTGCTCGAGCGGAAATGGGAGAAGTGAGAGAAGAAAACCAAAGACTAAAAAGGAGTTTAAGTCAAATGATGAAGGATTACGAAGCCTTACGAACGCAATTCATCGGCATCGTCGGACAAGAAGCAAATAAATTACCAGAAAAGGCCGACGACAAGTTGAACAACAAAAAACACGACGATGATCAGAACCAAACCGATGAAACCGAGCTCGTTTCGTTGACGTTGGGGAGGTTTTCGACCGTGAATAAGAATAAGAATGCAGTAGACGAGAACAGGAATCCCCGCGGCCAAGAGATTATCAACGACAAAGATGAAAAAGGCGTTAAAGAGAATCTATCTCTTGGTTTGAACTGCAAATTCGAGCTTGAATCACCAGCCACTAAAGAAACTGATTCTCCGAAAAGGAGTTTGGCGAATAGCTTTGATGATCATGAGGCGAAGGAGGAGGCTGGTGATACGAGTTGGTCGCCGAGTAAAGGGGCAAAGACAATGAAAAGTGGCAATAATGATGATGTTGCGCTGCAAAATCCGCCCAAGCGTGCTAGGGTTTCCGTCAGAGCTCGATGCGAGACTGCTACGATGAATGATGGATGTCAATGGAGAAAATATGGGCAAAAGATAGCGAAAGGAAATCCATGTCCGCGAGCATATTACCGTTGCACAGGATCGCCGACATGTCCTGTTCGAAAACAAGTCCAAAGATGCGTGGACGACATGTCGGTTTTAGTCACCACCTACGAAGGGACCCACAACCACCAACTACCGGTTTCCGCCACCGCCATGGCCTCCACCACCTCCGCCGCCGCCGCCATGCTCCTCTCCGGCTCCTCCTCCTCCACCACCCCAAATCCCAAACCCAATTTTTATTTACCCAATAACTCCTCAATCATTCCCCCTATTTCCCAAACTAACCCTACCATCACTCTCGACCTCACTTCAAATCCTTCCTCCTCCTCCTCAAGTTCCGCTGCCCAGTTTGGTAAATTCCCCACTTCTCGGTACCCTTTTACCAGCCACCTCGATTTTGGATCTTCTAGAAACAACGTGCTGACGTGGAATAACGACTTTCTTAGTTACAATAACAGAAATAACAACCCCACCAGTGCCAATAGTATTTACCAAAGCTACTACTTCCAACAACAGCGGAATAATCATAATCTTAATCAGCTTAACAATAATGTTGCTTCCGCGGCCTCCACTTCATTGCCACATCAGCAACCTCCGTTGCTCGATACGATCGCCGCCGCCACCAAGGCTATCACGGCCGACCCGAGCTTCCAGTCTGCTCTAGCTGCTGCTCTTACGTCGATTATTGGGACTGGCGGTGGAGGTGGGAATGCGATCAAGTCGCCGGTGAGAGGCGAACCGTCTTTGTTTCAGTTGACATCGACGACTGCAGCGAGTAAAGGGAATGGATGTGGGACGAGCTTTTTGAGCAATATGGCAGCAGCTGTGATGGGGGCGGGGACGGGGACATCGAGTACTTCCACAACGACAGGGAATATGGTGCTTGTTTCGGGGAGTTCCTTACCGTTTTCGAATCCAAAGAGTGCGTCGGCATCTCCAGGAGATCATATTGATCTTGCTAATTAA 1713 49.04 MEAAAAFGRPRPVVKVEKLIGDGDSPSKQSDPLVKEDELESARAEMGEVREENQRLKRSLSQMMKDYEALRTQFIGIVGQEANKLPEKADDKLNNKKHDDDQNQTDETELVSLTLGRFSTVNKNKNAVDENRNPRGQEIINDKDEKGVKENLSLGLNCKFELESPATKETDSPKRSLANSFDDHEAKEEAGDTSWSPSKGAKTMKSGNNDDVALQNPPKRARVSVRARCETATMNDGCQWRKYGQKIAKGNPCPRAYYRCTGSPTCPVRKQVQRCVDDMSVLVTTYEGTHNHQLPVSATAMASTTSAAAAMLLSGSSSSTTPNPKPNFYLPNNSSIIPPISQTNPTITLDLTSNPSSSSSSSAAQFGKFPTSRYPFTSHLDFGSSRNNVLTWNNDFLSYNNRNNNPTSANSIYQSYYFQQQRNNHNLNQLNNNVASAASTSLPHQQPPLLDTIAAATKAITADPSFQSALAAALTSIIGTGGGGGNAIKSPVRGEPSLFQLTSTTAASKGNGCGTSFLSNMAAAVMGAGTGTSSTSTTTGNMVLVSGSSLPFSNPKSASASPGDHIDLAN 570
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13445727 13449355 - Sed0026032.1 Sed01g1827 701131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1827 570 ProSiteProfiles WRKY domain profile. 229 295 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed01g1827 570 Pfam WRKY DNA -binding domain 235 293 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed01g1827 570 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 29 480 IPR044810 GO:0003700(InterPro)
Sed01g1827 570 FunFam probable WRKY transcription factor 31 219 296 - -
Sed01g1827 570 MobiDBLite consensus disorder prediction 164 192 - -
Sed01g1827 570 MobiDBLite consensus disorder prediction 86 107 - -
Sed01g1827 570 MobiDBLite consensus disorder prediction 17 57 - -
Sed01g1827 570 MobiDBLite consensus disorder prediction 86 105 - -
Sed01g1827 570 SMART WRKY_cls 234 294 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed01g1827 570 Coils Coil 39 73 - -
Sed01g1827 570 Gene3D WRKY domain 219 296 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed01g1827 570 MobiDBLite consensus disorder prediction 164 220 - -
Sed01g1827 570 SUPERFAMILY WRKY DNA-binding domain 227 295 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed01g1827 570 MobiDBLite consensus disorder prediction 196 213 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1827 Sed-Chr1:13445727 Sed12g1936 Sed-Chr12:30465888 1.10E-79 dispersed
Sed01g1827 Sed-Chr1:13445727 Sed01g1828 Sed-Chr1:13445727 2.70E-248 tandem
Sed01g1827 Sed-Chr1:13445727 Sed08g2579 Sed-Chr8:38266746 9.70E-145 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37229 PF03106 WRKY 4.90E-23 CL0274 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1827 - - - 0.0