Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1828 ATGGGAGAAGTGAGAGAAGAAAACCAAAGACTAAAAAGGAGTTTAAGTCAAATGATGAAGGATTACGAAGCCTTACGAACGCAATTCATCGGCATCGTCGGACAAGAAGCAAATAAATTACCAGAAAAGGCCGACGACAAGTTGAACAACAAAAAACACGACGATGATCAGAACCAAACCGATGAAACCGAGCTCGTTTCGTTGACGTTGGGGAGGTTTTCGACCGTGAATAAGAATAAGAATGCAGTAGACGAGAACAGGAATCCCCGCGGCCAAGAGATTATCAACGACAAAGATGAAAAAGGCGTTAAAGAGAATCTATCTCTTGGTTTGAACTGCAAATTCGAGCTTGAATCACCAGCCACTAAAGAAACTGATTCTCCGAAAAGGAGTTTGGCGAATAGCTTTGATGATCATGAGGCGAAGGAGGAGGCTGGTGATACGAGTTGGTCGCCGAGTAAAGGGGCAAAGACAATGAAAAGTGGCAATAATGATGATGTTGCGCTGCAAAATCCGCCCAAGCGTGCTAGGGTTTCCGTCAGAGCTCGATGCGAGACTGCTACGATGAATGATGGATGTCAATGGAGAAAATATGGGCAAAAGATAGCGAAAGGAAATCCATGTCCGCGAGCATATTACCGTTGCACAGGATCGCCGACATGTCCTGTTCGAAAACAAGTCCAAAGATGCGTGGACGACATGTCGGTTTTAGTCACCACCTACGAAGGGACCCACAACCACCAACTACCGGTTTCCGCCACCGCCATGGCCTCCACCACCTCCGCCGCCGCCGCCATGCTCCTCTCCGGCTCCTCCTCCTCCACCACCCCAAATCCCAAACCCAATTTTTATTTACCCAATAACTCCTCAATCATTCCCCCTATTTCCCAAACTAACCCTACCATCACTCTCGACCTCACTTCAAATCCTTCCTCCTCCTCCTCAAGTTCCGCTGCCCAGTTTGGTAAATTCCCCACTTCTCGGTACCCTTTTACCAGCCACCTCGATTTTGGATCTTCTAGAAACAACGTGCTGACGTGGAATAACGACTTTCTTAGTTACAATAACAGAAATAACAACCCCACCAGTGCCAATAGTATTTACCAAAGCTACTACTTCCAACAACAGCGGAATAATCATAATCTTAATCAGCTTAACAATAATGTTGCTTCCGCGGCCTCCACTTCATTGCCACATCAGCAACCTCCGTTGCTCGATACGATCGCCGCCGCCACCAAGGCTATCACGGCCGACCCGAGCTTCCAGTCTGCTCTAGCTGCTGCTCTTACGTCGATTATTGGGACTGGCGGTGGAGGTGGGAATGCGATCAAGTCGCCGGTGAGAGGCGAACCGTCTTTGTTTCAGTTGACATCGACGACTGCAGCGAGTAAAGGGAATGGATGTGGGACGAGCTTTTTGAGCAATATGGCAGCAGCTGTGATGGGGGCGGGGACGGGGACATCGAGTACTTCCACAACGACAGGGAATATGGTGCTTGTTTCGGGGAGTTCCTTACCGTTTTCGAATCCAAAGAGTGCGTCGGCATCTCCAGGAGATCATATTGATCTTGCTAATTAA 1578 48.48 MGEVREENQRLKRSLSQMMKDYEALRTQFIGIVGQEANKLPEKADDKLNNKKHDDDQNQTDETELVSLTLGRFSTVNKNKNAVDENRNPRGQEIINDKDEKGVKENLSLGLNCKFELESPATKETDSPKRSLANSFDDHEAKEEAGDTSWSPSKGAKTMKSGNNDDVALQNPPKRARVSVRARCETATMNDGCQWRKYGQKIAKGNPCPRAYYRCTGSPTCPVRKQVQRCVDDMSVLVTTYEGTHNHQLPVSATAMASTTSAAAAMLLSGSSSSTTPNPKPNFYLPNNSSIIPPISQTNPTITLDLTSNPSSSSSSSAAQFGKFPTSRYPFTSHLDFGSSRNNVLTWNNDFLSYNNRNNNPTSANSIYQSYYFQQQRNNHNLNQLNNNVASAASTSLPHQQPPLLDTIAAATKAITADPSFQSALAAALTSIIGTGGGGGNAIKSPVRGEPSLFQLTSTTAASKGNGCGTSFLSNMAAAVMGAGTGTSSTSTTTGNMVLVSGSSLPFSNPKSASASPGDHIDLAN 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13445727 13449355 - Sed0026032.2 Sed01g1828 701132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1828 525 Coils Coil 1 28 - -
Sed01g1828 525 MobiDBLite consensus disorder prediction 83 99 - -
Sed01g1828 525 MobiDBLite consensus disorder prediction 119 147 - -
Sed01g1828 525 FunFam probable WRKY transcription factor 31 174 251 - -
Sed01g1828 525 Pfam WRKY DNA -binding domain 190 248 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed01g1828 525 Gene3D WRKY domain 174 251 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed01g1828 525 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 1 435 IPR044810 GO:0003700(InterPro)
Sed01g1828 525 MobiDBLite consensus disorder prediction 151 168 - -
Sed01g1828 525 MobiDBLite consensus disorder prediction 41 60 - -
Sed01g1828 525 MobiDBLite consensus disorder prediction 119 175 - -
Sed01g1828 525 SUPERFAMILY WRKY DNA-binding domain 182 250 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed01g1828 525 MobiDBLite consensus disorder prediction 41 65 - -
Sed01g1828 525 SMART WRKY_cls 189 249 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed01g1828 525 ProSiteProfiles WRKY domain profile. 184 250 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed01g1828 525 MobiDBLite consensus disorder prediction 80 99 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1828 Sed-Chr1:13445727 Sed08g2579 Sed-Chr8:38266746 6.60E-140 dispersed
Sed01g1827 Sed-Chr1:13445727 Sed01g1828 Sed-Chr1:13445727 2.70E-248 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37230 PF03106 WRKY 4.40E-23 CL0274 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1828 - - - 0.0