Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1829 ATGGCGCCGGTTTTGTCTCGCTTACTTTTCCGACGAAATGTTCCGGCACCGGCCTTTCGCGCCTCCACTGGCTTCAACTTCTACAGAGGAATTCATTCCTTATTTTTTGCAACGGTAGAAGCAGAACAAATCTCAGGTTCTAAGCCAGCAGAAGTTCATAACTTTTTGCATGGTAAATGGATTCAATCCGCTGGTTGGAATACTATTCCGGATCCTTTAAACGGAGAACCATTCATTAAAGTTGCCGAAGTTGATGAAACAGAAATCCAGCCATTCGTGAAGAGTCTGTCCAAATGCCCCAAGCATGGCTTACACAATCCTTTCAAATCGCCTGAGAGATATCTATTGTTTGGAGATGTATCTTCCAAGGCTGCCGACATGCTTTCCAAACCAGAGGTGAATGACTTCTTTACGAGGCTAATTCAAAGAGTTTCTCCAAAAAGTTATAAGCAAGCTTCTGCTGAAGTAAATGTTACCATCAAATTTCTGCGGAACTTCTCTGGCGATCAGGTTCGCTTTCTGGCAAGATCCTTTGCAGTAGCGGGTGATCATTGTGGACAACAGAGTCATGGTTTCCGTTGGCCTTATGGTCCTGTTGCAATCATCACTCCTTTCAACTTTCCCTTAGAAATTCCAGTACTTCAGCTGATGGGTGCACTTTATATGGGTAACAAACCTGTTTTAAAAGTTGATAGCAAGGTCAGCATAGTTATGGACCAAATGCTTCGATTGCTTCACCATTGTGGTCTACCTTTGGAAGATGTAGATTTTATAAATTGTGATGGGAAGACAATGAACAGGTTATTGCTGGAGGCAAATCCATCTATGACTCTTTTCACTGGTAGCTCAAGGGTGGCAGATAAGTTGGCTGCTGACTTGAAAGGCCGCATTAGATTGGAAGATGCAGGTTTTGATTGGAAAATCTTAGGACCAGATGTTCAAGAGGAAGACTATGTTGCATGGGTTTGTGAACAAGATGCATATGCTTGTAGTGGCCAGAAGTGCTCGGCACAATCGATACTTTTCATGCATGAGAATTGGTCGGCAACTTCACTTATTTCGAAGATAAAGCATCTTGCAGAGAGAAGAAATTTGACTGATTTAACGATTGGCCCAGTCCTTACACTCACTAGTGAAATGATACTAGATCACATGAATAAATTGCTCAAAATACCAGGGGCAAAGTTGCTCTTTGGAGGTGAACCTCTCATAGACCACTCTATTCCACCCATATATGGAGCTATAAAACCCACCGCAATATATGTTCCACTTGAGGAAATCATGAAAGATGACAATTATGAGCTCGTGACTAAAGAAATTTTTGGACCATTCCAGGTCATTACTGAATATAAGAAAGACCAACTTCCAGTTGTGTTGGATGCTCTTGAGCGGATGCATGCTCACCTATCAGCAGCTGTTGTTTCAAATGACCTGCTTTTTTTGCAGAAAGTTATTGGCAATAGTGTGAATGGAACTACGTACGCTGGTTTACGAGCCAGAACAAGTGGAGCGCCACAGAACCATTGGTTTGGACCAGCAGGAGACCCAAGAGGTGCCGGTATCGGTTCCCCGGAAGCGATCAAACTCCTATGGTCTTGTCACAGGGAGATCATATATGACCATGGCCCCTTGCCCTCAAACTGGACAATCCCACCATCAACTTGA 1665 43.3 MAPVLSRLLFRRNVPAPAFRASTGFNFYRGIHSLFFATVEAEQISGSKPAEVHNFLHGKWIQSAGWNTIPDPLNGEPFIKVAEVDETEIQPFVKSLSKCPKHGLHNPFKSPERYLLFGDVSSKAADMLSKPEVNDFFTRLIQRVSPKSYKQASAEVNVTIKFLRNFSGDQVRFLARSFAVAGDHCGQQSHGFRWPYGPVAIITPFNFPLEIPVLQLMGALYMGNKPVLKVDSKVSIVMDQMLRLLHHCGLPLEDVDFINCDGKTMNRLLLEANPSMTLFTGSSRVADKLAADLKGRIRLEDAGFDWKILGPDVQEEDYVAWVCEQDAYACSGQKCSAQSILFMHENWSATSLISKIKHLAERRNLTDLTIGPVLTLTSEMILDHMNKLLKIPGAKLLFGGEPLIDHSIPPIYGAIKPTAIYVPLEEIMKDDNYELVTKEIFGPFQVITEYKKDQLPVVLDALERMHAHLSAAVVSNDLLFLQKVIGNSVNGTTYAGLRARTSGAPQNHWFGPAGDPRGAGIGSPEAIKLLWSCHREIIYDHGPLPSNWTIPPST 554
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13458729 13465219 + Sed0027525.1 Sed01g1829 701133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1829 554 Pfam Aldehyde dehydrogenase family 71 494 IPR015590 GO:0016491(InterPro)
Sed01g1829 554 PANTHER ALPHA-AMINOADIPIC SEMIALDEHYDE DEHYDROGENASE 44 548 IPR044638 GO:0003842(PANTHER)|GO:0004029(InterPro)|GO:0005739(PANTHER)|GO:0010133(PANTHER)
Sed01g1829 554 FunFam Aldehyde dehydrogenase 12 311 499 - -
Sed01g1829 554 SUPERFAMILY ALDH-like 52 522 IPR016161 GO:0016491(InterPro)
Sed01g1829 554 FunFam probable aldehyde dehydrogenase 45 303 - -
Sed01g1829 554 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 44 303 IPR016162 GO:0016491(InterPro)
Sed01g1829 554 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 328 339 IPR016160 GO:0016491(InterPro)
Sed01g1829 554 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 304 495 IPR016163 GO:0016620(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1829 Sed-Chr1:13458729 Sed08g2577 Sed-Chr8:38249675 1.30E-74 dispersed
Sed01g1829 Sed-Chr1:13458729 Sed08g2576 Sed-Chr8:38249675 1.30E-74 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1829 K00294 - csv:101214440 997.653