Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1830 ATGGCTCTCCATGATTTCCTCTCCATTTCTCATTCTATATTTAATGAAGGAATTGATCATTTTAAACCTTTAGTTCTGTCATGCCAACTGCATCCCAAATTCAAATGGATTATTGAGCATTTACAAAAGTTTACAAATAAAAATATCTCCAAAATATCAAAAAAGCAGAAGCAGAAAGAGAATATGAGAGAAACAGAATGCAGCATTTTTAGGATTAAACTGCTAATGATATTTGCTTTTGTAATGATATTTCCAACCCTCAAAGCTAATATTGGAGAGTTTGATGAGGTTTGGCAGGAAAGATCTAAAGAAGCCAAGAAAGCTGCTTTTGATGCCTTCCAACCTGATCCAGAAGAAGTTGCAAATAATTTAAACAAGGAAGTTAACAGTGCCTTATATGGTGGAAATAAGACAAGAAGAAATTTGGGGAAATACAATGGTCCATGTTTAGCTACGAATCCGATTGACCGATGCTGGAGATGTGATAAAAACTGGTATAAAAATCGCAAGAAGCTAGCTGATTGTGCCCTCGGCTTTGGTCGTGGAACAATAGGAGGCAAAGATGGAGAGTTTTATGTGGTTCGAGATTCAAGCGATCACGACATGCTTAATCCTAAGCCGGGCACCTTGCGCCATGCCGTGATTCAGGATAGACCACTTTGGATTACATTTGCAAGTGACATGGTGATTAGGCTAGTTGAAGAGCTTATATTTACTGATAACAAGACATTAGATGGACGTGGTGCGAATGTGCACATTGCTCATGGTGGTCAAATGACTCTACAATTTGTGAAGAACATAATCATCCATAATGTGCACGTTCATGACATCAAGGCTGGCAATGGAGGCCTTATAAGAGACTCGGTGAGCCACTATGGATTTCGAACACGGAGTGATGGCGATGGCATCTCGTTGTTTGGAGCTTCTAAGGTTTGGATAGATCATGTTTCGTTGTATCATTGTACAGATGGACTAATCGATGCAATCATGGCATCTACTGGCATTACCATTTCCAATTGTCACTTCACGCACCATAACGACGTGTTGTTATTAGGTGCAAGTGATGGCTATTCGGATGATCGGATTATGCAGGTAACTCTTGCATTTAATCACTTTGGTAAGGGGTTGGTGCAAAGAATGCCGAGATGCCGGTGGGGGTTCTTCCATGTCGTCAATAATGACTTCACTCACTGGCGTATGTACGCCATTGGCGGTAGCAGCAACCCCACCATTATCAGCCAAGGCAACCGTTTCACTGCCCCGCCAAACCCAAATTGCAAAGAGGTGACGAAAAGGGTGTTTGCACCCAAAAGCGTGTGGAAATCGTGGAACTGGAGATCGGAGGGAGATCTGACGGTGAATGGAGCGTTTTTCGTCCAATCTGGGAACCCCGTTAGAGGTCACTCTAAGAAAGATGTAATCAGTGCAAAACCAGGGACCTATGTGACCAGGCTTACAAGATTTTCTGGGACTCTGCATTGCAGAAGAAACCAGCCATGTTAG 1503 42.32 MALHDFLSISHSIFNEGIDHFKPLVLSCQLHPKFKWIIEHLQKFTNKNISKISKKQKQKENMRETECSIFRIKLLMIFAFVMIFPTLKANIGEFDEVWQERSKEAKKAAFDAFQPDPEEVANNLNKEVNSALYGGNKTRRNLGKYNGPCLATNPIDRCWRCDKNWYKNRKKLADCALGFGRGTIGGKDGEFYVVRDSSDHDMLNPKPGTLRHAVIQDRPLWITFASDMVIRLVEELIFTDNKTLDGRGANVHIAHGGQMTLQFVKNIIIHNVHVHDIKAGNGGLIRDSVSHYGFRTRSDGDGISLFGASKVWIDHVSLYHCTDGLIDAIMASTGITISNCHFTHHNDVLLLGASDGYSDDRIMQVTLAFNHFGKGLVQRMPRCRWGFFHVVNNDFTHWRMYAIGGSSNPTIISQGNRFTAPPNPNCKEVTKRVFAPKSVWKSWNWRSEGDLTVNGAFFVQSGNPVRGHSKKDVISAKPGTYVTRLTRFSGTLHCRRNQPC 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13466423 13469528 - Sed0000677.1 Sed01g1830 701134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1830 500 Gene3D - 152 493 IPR012334 -
Sed01g1830 500 PRINTS Pollen allergen Amb family signature 443 467 IPR018082 -
Sed01g1830 500 PRINTS Pollen allergen Amb family signature 175 192 IPR018082 -
Sed01g1830 500 PRINTS Pollen allergen Amb family signature 401 420 IPR018082 -
Sed01g1830 500 PRINTS Pollen allergen Amb family signature 379 398 IPR018082 -
Sed01g1830 500 PRINTS Pollen allergen Amb family signature 299 320 IPR018082 -
Sed01g1830 500 PRINTS Pollen allergen Amb family signature 199 224 IPR018082 -
Sed01g1830 500 PRINTS Pollen allergen Amb family signature 235 251 IPR018082 -
Sed01g1830 500 SMART amb_all 227 424 IPR002022 -
Sed01g1830 500 Pfam Pectate lyase 238 418 IPR002022 -
Sed01g1830 500 SUPERFAMILY Pectin lyase-like 144 494 IPR011050 -
Sed01g1830 500 Pfam Pectate lyase, N terminus 90 142 IPR007524 GO:0030570(InterPro)
Sed01g1830 500 PANTHER PECTATE LYASE 18-RELATED 83 496 IPR045032 GO:0030570(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1830 Sed-Chr1:13466423 Sed11g0766 Sed-Chr11:13743833 1.30E-169 dispersed
Sed01g1830 Sed-Chr1:13466423 Sed06g1558 Sed-Chr6:40394637 1.00E-169 transposed
Sed01g1830 Sed-Chr1:13466423 Sed08g1352 Sed-Chr8:28116850 1.00E-169 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1830 K01728 - csv:101218812 756.903