Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1838 ATGTGCAAGAATACTCAAATGGGGTTGTTGGTTTTGGTTTTCTCATCGATTTTACTGTCAACCCTTTTCAGCTCTTGCACTCTTGCTCTTACTCCCGATGGCCTGGCGTTGTTGGAAATTAGAAGCGATTTTAATGATAGCAAGAACCTTCTTGGTGATTGGGAAGCTTCTGATGAGTCTCCCTGCAAATGGTCTGGTATATCTTGTCACTCTGAGGATCAACGAGTCCGCTCAATTAATTTGCCTTACATGCAACTTGGAGGGATTATGTCACCCAGCATTGGTAAACTCAGTAGATTGCAGAGACTGGCACTCCACCATAATGGCTTACATGGATATATTCCTAATGAAATTACTAAATGTACTCAGCTTAAAGCTCTGTATTTGAGGTCTAATTATCTCCAAGGTGGTATACCATCGGATATAGGAAACCTTTCTGCTCTTACAATACTGGACTTGTCAAGCAATTCGTTGAAGGGTGCTATTCCATCATCCATTGGCCGTCTCTCACTTCTGCGCCATTTGAATTTGTCCACCAACTTTTTCTCTGGGGAAATTCCAGATTTTGGAGTTCTTAGCACTTTTGGAAGCAATTCGTTTGTTGGCAACCTAGATCTCTGTGGTCATCAAGTTAACAAGGCCTGCCTAACCTCGTTGGGATTCCCTGCAGTGTTGCCCCATGAAAGTGATGAAGCTTCTGTGCCTGTGAAAAGATCTTCACACTACATCAAAGGGGTATTAATCGGTGCAATGTCCACTATGGGTGTTGCACTTGTACTGCTTGTTCCATTCTTGTGGATCCGGTGGCTATCAAAGAAGGAAAGAGCTGCTAAGAGATACACAGAAGTAAAAAAGCAAGTGGTTCATGAACCGAGCACAAAACTCATTACTTTTCATGGTGACCTACCATACCCATCATGTGAGATCATAGAAAAGCTGGAGTCACTAGACGAAGATGATATTGTCGGTTCAGGAGGATTTGGTATCGTATACCGAATGGTAATGAACGATTGTGGAACATTTGCTGTTAAAAAGATTGATGGAAGCAGAAAAGGCTCAGACCAAGTATTTGAGAGAGAGTTGGAGATTCTGGGTTGCATCAAACATTTAAACTTAGTCAATTTGCGGGGATATTGTCGTCTTCCAACTACAAAGCTTCTTATCTATGACTTTCTATCCATGGGCAGCTTAGATGATTTCTTGCATGAACAAGAACCAGAAAGAAAGCCTTTGGAATGGAGAGCTCGTCTAAGGATAGCTTTGGGCTCTTCAAGGGGGATCACATACTTGCATCATGATTGTTGTCCAAAGATCTTGCATCGCGATATTAAATCGAGTAACATTCTTCTTGATGAAAACTTGGAGCCTCATGTATCTGACTTTGGACTGGCCAAGCTTTTGGTTGATGAGGATGCCCATGTAACCCCTGTTGTTGCTGGAACATTTGGCTATTTGGCTCCAGGTGTTCATTAG 1473 42.29 MCKNTQMGLLVLVFSSILLSTLFSSCTLALTPDGLALLEIRSDFNDSKNLLGDWEASDESPCKWSGISCHSEDQRVRSINLPYMQLGGIMSPSIGKLSRLQRLALHHNGLHGYIPNEITKCTQLKALYLRSNYLQGGIPSDIGNLSALTILDLSSNSLKGAIPSSIGRLSLLRHLNLSTNFFSGEIPDFGVLSTFGSNSFVGNLDLCGHQVNKACLTSLGFPAVLPHESDEASVPVKRSSHYIKGVLIGAMSTMGVALVLLVPFLWIRWLSKKERAAKRYTEVKKQVVHEPSTKLITFHGDLPYPSCEIIEKLESLDEDDIVGSGGFGIVYRMVMNDCGTFAVKKIDGSRKGSDQVFERELEILGCIKHLNLVNLRGYCRLPTTKLLIYDFLSMGSLDDFLHEQEPERKPLEWRARLRIALGSSRGITYLHHDCCPKILHRDIKSSNILLDENLEPHVSDFGLAKLLVDEDAHVTPVVAGTFGYLAPGVH 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13513366 13524258 - Sed0024354.2 Sed01g1838 701142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1838 490 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 30 192 - -
Sed01g1838 490 Pfam Leucine Rich Repeat 123 145 IPR001611 GO:0005515(InterPro)
Sed01g1838 490 Pfam Leucine Rich Repeat 172 188 IPR001611 GO:0005515(InterPro)
Sed01g1838 490 Pfam Leucine Rich Repeat 148 169 IPR001611 GO:0005515(InterPro)
Sed01g1838 490 SUPERFAMILY L domain-like 32 214 - -
Sed01g1838 490 Gene3D Transferase(Phosphotransferase) domain 1 392 490 - -
Sed01g1838 490 Gene3D Phosphorylase Kinase; domain 1 274 391 - -
Sed01g1838 490 ProSitePatterns Serine/Threonine protein kinases active-site signature. 438 450 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g1838 490 Gene3D Ribonuclease Inhibitor 32 217 IPR032675 -
Sed01g1838 490 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 26 - -
Sed01g1838 490 ProSitePatterns Protein kinases ATP-binding region signature. 322 345 IPR017441 GO:0005524(InterPro)
Sed01g1838 490 ProSiteProfiles Protein kinase domain profile. 316 490 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1838 490 FunFam Os07g0541700 protein 392 481 - -
Sed01g1838 490 SMART serkin_6 316 490 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1838 490 Pfam Leucine rich repeat N-terminal domain 32 69 IPR013210 -
Sed01g1838 490 Pfam Protein kinase domain 319 488 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1838 490 SUPERFAMILY Protein kinase-like (PK-like) 296 487 IPR011009 -
Sed01g1838 490 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 18 92 IPR050647 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1838 Sed-Chr1:13513366 Sed08g2570 Sed-Chr8:38220240 5.70E-210 dispersed
Sed01g1837 Sed-Chr1:13513366 Sed01g1838 Sed-Chr1:13513366 1.90E-231 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78631 PF00069 Pkinase 1.40E-30 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1838 - - - 0.0