Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed01g1839 | ATGGGGGAAAAACCGCAAGTGCTGGAGGCTGTGTTGAAAGAAGCTGTGGATTTAGAAAATATACCCATTGATGAAGTTTTTGAGAACCTGAGATGTAGCAAAGAGGGTCTTACCAGTGAGGCTGTTGAGGAATGGCTCAAGATTTTTGGCCACAACAAGCTGGGGGAAAAGAAGGAAAGCAAAGTTTTGAAGTTTTTGGGGTTTATGTGGAATCCTCTATCATGGGTTATGGAAGCTGCTGCAATTGTGACTATTGCACTTGCAAATGGAGGAGAAAACAATGCAGGAAATGCTGCAGCTGCTCTCATGGCTCGTCTTGCTCCCAAAGCCAAGTCTGCGCTTACGGGTGAATCTCTCCCTGTAACGAAAGGTCCTGCTGTGGTCATTGCTACTGGTGTACACACCTTTTTTGGTAAAGCTGCTCACCTTGTTGACACTACCAACCAAGTGGATCACTTTCAAAAGGTCTTGACTGCCATAGGAAACTTCTGCATATGCTCCATTGCTTTGGGAATGGTAGTTGAGATCATTGTCATGTACCCAATTCAGGATAGCGAGTATCGTCCTGGACTTGATAACCTCCTTGTGCTACTTATTGGAGGAATTCCCATAGCCATGCCTACAGGTGCTATTACAAAGAGGATGACTGCTATTGAAGAAATGGCAGGCATGGATGTGCTTTGCAGTGATAAGACAGGAACCTTGACATTGAACAAGTTAACTGTTGATAGAAATCTTGTTGAGGTTTTCAGTAACGGGATAGATGCAGACACCGTGGTTTTAATGGCTGCTCGAGCATCAAGCACTGAAAATCAAGATGCTATAGATACTGCTATTGTTGGGATGCTTGCTGATCCAAAGGAGGCACGTGCTGGTATTCAAGAAGTACATTTTCTTCCTTTCAATCCTACTGATAAGCGAACAGCATTGACTTATATTGACCACGAGGGCAAGATGCACAGAATTCTAAATCTTGCATACAACAAGTCTGAGATTGAGAGAAAAGTTCATGCAGTGATTGATAAGTTTGTCGAACGGGGTCTGCGTTCACTTGGTGTAGCATACCAGGAAGTTCCAGAAGGAAGGAAAGAAAGTGCTGGAAGTCCTTGGAAATTCATGGGCCTCTTGCCTTTGTTTGACCTGCCAAGGCACGATAGAGATCAACTGGCTATAGGAAAGGAAACCGGACGCCGATTGGGGATGAGAACGAACATGTATCCATCATCTGCTTTGCTAGGACAGGAGAAGGATGAGTCCATTGCTGCTTTACCTGTTGATAATCTAATAGAAAAGGCAGATGGTTTTGCTGGTGTATTCCCTGAGCACAAATACGAGATTGTAAAATGCTTGCAAGCTATGAAACATATATGCGGGATGACTGGTGATGGAGTGAATGATGCTCCTGCACTTAAAAAAGCAGACATTGGCATAGCTGTTGCTGATGCAACTGATGCTGCTCGGAGCGCTTCCGATATTATTTATGCAGTTTCCATCACATTACGTATTGTGCTTGGTTTCATGTTGAAATTTGATTTTCAACCATTTATGGTGCTTATCATTGCTATCCTTAATGATGGCACAATCATGACAATATCAAAGGATAGGGTTAAACCATCTCCTCTGCCAGATAGTTGGAAGCTGGCTGAAATTTTTACTACTGGCATTGTACTTGGTAGTTACTTGGCAATGATGTCGGTCATATTTTTCTGGGTGTCGTATAAAACTGACTTTTTTCCTCGAGTTTTTGGGGTGCCAACCCTTGAAAAAACAGCTCATGATGACTTCCGAAAGCTAGCCTCAGCTATCTATCTGCAAGTGAGCACTATCAGTCAGGCCCTCATTTTTGTTACGCGATCTCGGAGTTGGTCCTACGTCGAGCGTCCAGGGCTACTTCTTGTAGTGGCTTTTATACTTGCTCAATTGGTTGCCACTCTGATTGCTGTCTATGCCAATTGGAGTTTTGCTGCCATTGAAGGAATTGGTTGGGGTTGGGCTGGTGTAATTTGGCTTTATAACATCATCTTTTACATTCCTCTTGATCCCATAAAGTTTGCTACTCGATATGCTTTGAGTGGAAAGGCTTGGGATCTCATGCTTGAGCAAAGGGTTGCTTTCACAAGACAAAAGGATTTCGGTAAGGAACAACGTGAGCTGCAATGGGCTCATGCGCAAAGAACGCTGCACGGTTTGCAACCACCTGATACTAAGATGTTCACCGAGCGAACTCATTTCACAGAACTCAATCACATGGCTGAAGAAGCCAAAAGGAGAGCTGAAATTGCTAGATTGAGGGAACTAAACACACTGAAAGGTCATGTAGAATCAGTGGTGAGATTGAAGGGTCTTGATATCGAAACAATTCAACAAGCATACACCGTCTGCGGGGGCGATGCACAATACTGTATAATACTGTCTTGTCGTTTTTTGCTGACTGCTGGTATGAAGATATGCAATTGGCATATGTTTATTTGA | 2472 | 43.45 | MGEKPQVLEAVLKEAVDLENIPIDEVFENLRCSKEGLTSEAVEEWLKIFGHNKLGEKKESKVLKFLGFMWNPLSWVMEAAAIVTIALANGGENNAGNAAAALMARLAPKAKSALTGESLPVTKGPAVVIATGVHTFFGKAAHLVDTTNQVDHFQKVLTAIGNFCICSIALGMVVEIIVMYPIQDSEYRPGLDNLLVLLIGGIPIAMPTGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDRNLVEVFSNGIDADTVVLMAARASSTENQDAIDTAIVGMLADPKEARAGIQEVHFLPFNPTDKRTALTYIDHEGKMHRILNLAYNKSEIERKVHAVIDKFVERGLRSLGVAYQEVPEGRKESAGSPWKFMGLLPLFDLPRHDRDQLAIGKETGRRLGMRTNMYPSSALLGQEKDESIAALPVDNLIEKADGFAGVFPEHKYEIVKCLQAMKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIIYAVSITLRIVLGFMLKFDFQPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLAEIFTTGIVLGSYLAMMSVIFFWVSYKTDFFPRVFGVPTLEKTAHDDFRKLASAIYLQVSTISQALIFVTRSRSWSYVERPGLLLVVAFILAQLVATLIAVYANWSFAAIEGIGWGWAGVIWLYNIIFYIPLDPIKFATRYALSGKAWDLMLEQRVAFTRQKDFGKEQRELQWAHAQRTLHGLQPPDTKMFTERTHFTELNHMAEEAKRRAEIARLRELNTLKGHVESVVRLKGLDIETIQQAYTVCGGDAQYCIILSCRFLLTAGMKICNWHMFI | 823 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 13525684 | 13531174 | - | Sed0010802.1 | Sed01g1839 | 701143 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed01g1839 | 823 | SFLD | p-type atpase | 210 | 495 | IPR044492 | - | |
| Sed01g1839 | 823 | Gene3D | - | 114 | 147 | - | - | |
| Sed01g1839 | 823 | Gene3D | - | 148 | 224 | - | - | |
| Sed01g1839 | 823 | Gene3D | - | 492 | 689 | - | - | |
| Sed01g1839 | 823 | Gene3D | - | 68 | 113 | - | - | |
| Sed01g1839 | 823 | Pfam | haloacid dehalogenase-like hydrolase | 224 | 474 | - | - | |
| Sed01g1839 | 823 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 230 | 236 | IPR018303 | - | |
| Sed01g1839 | 823 | Gene3D | - | 385 | 491 | IPR023214 | - | |
| Sed01g1839 | 823 | FunFam | Plasma membrane ATPase | 240 | 379 | - | - | |
| Sed01g1839 | 823 | Gene3D | - | 240 | 379 | IPR023299 | GO:0000166(InterPro) | |
| Sed01g1839 | 823 | PRINTS | P-type cation-transporting ATPase superfamily signature | 110 | 124 | - | - | |
| Sed01g1839 | 823 | PRINTS | P-type cation-transporting ATPase superfamily signature | 460 | 479 | - | - | |
| Sed01g1839 | 823 | PRINTS | P-type cation-transporting ATPase superfamily signature | 483 | 495 | - | - | |
| Sed01g1839 | 823 | PRINTS | P-type cation-transporting ATPase superfamily signature | 374 | 385 | - | - | |
| Sed01g1839 | 823 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 17 | 690 | IPR023298 | - | |
| Sed01g1839 | 823 | FunFam | Plasma membrane ATPase | 379 | 508 | - | - | |
| Sed01g1839 | 823 | Gene3D | - | 742 | 793 | - | - | |
| Sed01g1839 | 823 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 19 | 111 | - | GO:0005886(PANTHER)|GO:0008553(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0051453(PANTHER)|GO:1902600(PANTHER) | |
| Sed01g1839 | 823 | NCBIfam | HAD-IC family P-type ATPase | 435 | 493 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed01g1839 | 823 | SFLD | Haloacid Dehalogenase | 210 | 495 | - | - | |
| Sed01g1839 | 823 | PRINTS | H+-transporting ATPase (proton pump) signature | 432 | 448 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed01g1839 | 823 | PRINTS | H+-transporting ATPase (proton pump) signature | 460 | 476 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed01g1839 | 823 | PRINTS | H+-transporting ATPase (proton pump) signature | 336 | 354 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed01g1839 | 823 | Pfam | Cation transporter/ATPase, N-terminus | 20 | 83 | IPR004014 | - | |
| Sed01g1839 | 823 | SMART | Cation_ATPase_N_a_2 | 17 | 89 | IPR004014 | - | |
| Sed01g1839 | 823 | Gene3D | - | 225 | 384 | IPR023214 | - | |
| Sed01g1839 | 823 | SUPERFAMILY | HAD-like | 224 | 494 | IPR036412 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed01g1839 | Sed-Chr1:13525684 | Sed08g0192 | Sed-Chr8:1079970 | 0.00E+00 | dispersed | |
| Sed01g1839 | Sed-Chr1:13525684 | Sed08g2568 | Sed-Chr8:38206175 | 0.00E+00 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed01g1839 | K01535 | - | csv:101214920 | 1333.16 |