Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1856 ATGATGTTGGAAGAGCTTGAACGGAGATCTGGTCGAGAGCTAGGCGACGAAGCGGCGGTGACTTCCAACTCCAGTCAGAATTCCATGAGCAGTGAGAGTTGCAGCAGTTTCAGTCGCCTCTCGTTCGACGCCGCGGTTGATTTTCCGACCTCCAGATCCTCGCCGGCGAGCCTCGATTTGAAGCCTCACCGATCGTCCGATTTCGCTTACTCTGCGATTCGTCGCCGGAAATCGAATCTTACGTTTCGTCATTTTCGTCTCCTCCGCCGTATCGGCGCGGGCGACATTGGCACTGTGTATCTATGTCAGTTGAGGAACTCGACGGAGGACGGTTGCGATGAGCATGACGAAGAGGATCCGTGTTTGTACGCGATGAAAGTGGTGGATAAGGAGGCGTTGGAGTTGAAGAAGAAGGTGCAGAGGGCGGCAATGGAGAGGAAGATATTGAAGATGCTGGATCATCCGTTTTTGCCTACTCTGTACTCTGAGTTTGAGGCTTCTCATTTCTCTTGTATCGTTATGGAGTTTTGTTCCGGCGGCGATTTGCATTCTCTCCGCCATAAACAGCCGCGCAAACGCTTCTGTCTCGGCTCGGCTAGGTTTTATGCTGCTGAAGTTCTCGTTGCTTTAGAGTACCTTCACATGCTTGGAATCATATATAGAGATCTTAAGCCGGAAAATGTCCTCGTCCGATCAGACGGTCACATTATGCTATCGGATTTCGATCTATCTCTCTGCTCCAACGCGACCCCTGCCGTCGAATCGCCGGAATCTTCCCCGAATCCCAGGTTTCCCGATGCGGCGGCACTCCCCAGAACCAAATCAGTAACCACCACCTCCGCGGCCACTACCCCGTTTTCCTGCCTCTACAAACGCCTTTTCCGGTCACGCAAGGTTCAAACCCTTGCCTCCAACTGGCTCTTTGTCGCCGAACCCGTCTCCGCCCGATCATGTTCTTTTGTCGGCACCCATGAATACGTTTCGCCGGAAGTTGCCGCCGGCGGATCCCACGGCAACGCTGTTGACTGGTGGGCCTTTGGTGTATTCCTCTATGAGCTCATCTACGGCCGGACTCCGTTCGCTGCATCGTCTAATGAGACGACGCTAAGGAACATAATTAAGAAGCCTTTGACGTTTCCAACCGCCGCGTCCGGCACGCTTGAGCACCACGCACGGGACCTTATATCCGGGTTGCTTAACAAAGACCCGACCCGGAGACTAGGATCGAAACGCGGGTCTGCTGATATAAAAAAGCATCCTTTTTTCAAGAGCCTCAATTTTGCCCTAATACGGTCGCTCACTCCACCGGAGGTTCCCGGAGTAGGGCAGCGGAAATCGATTCAGGCACCGGAGGAGTCCAAAACCAGGGACAAGGCAGCTTGCTCACTAGGGTTCGAATACTTCTAA 1407 53.3 MMLEELERRSGRELGDEAAVTSNSSQNSMSSESCSSFSRLSFDAAVDFPTSRSSPASLDLKPHRSSDFAYSAIRRRKSNLTFRHFRLLRRIGAGDIGTVYLCQLRNSTEDGCDEHDEEDPCLYAMKVVDKEALELKKKVQRAAMERKILKMLDHPFLPTLYSEFEASHFSCIVMEFCSGGDLHSLRHKQPRKRFCLGSARFYAAEVLVALEYLHMLGIIYRDLKPENVLVRSDGHIMLSDFDLSLCSNATPAVESPESSPNPRFPDAAALPRTKSVTTTSAATTPFSCLYKRLFRSRKVQTLASNWLFVAEPVSARSCSFVGTHEYVSPEVAAGGSHGNAVDWWAFGVFLYELIYGRTPFAASSNETTLRNIIKKPLTFPTAASGTLEHHARDLISGLLNKDPTRRLGSKRGSADIKKHPFFKSLNFALIRSLTPPEVPGVGQRKSIQAPEESKTRDKAACSLGFEYF 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13721729 13724480 - Sed0011867.1 Sed01g1856 701160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1856 468 FunFam protein kinase PINOID 177 245 - -
Sed01g1856 468 FunFam protein kinase PINOID 2 83 176 - -
Sed01g1856 468 Gene3D Phosphorylase Kinase; domain 1 84 176 - -
Sed01g1856 468 Gene3D Transferase(Phosphotransferase) domain 1 177 244 - -
Sed01g1856 468 SMART serkin_6 85 422 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1856 468 Gene3D Transferase(Phosphotransferase) domain 1 317 440 - -
Sed01g1856 468 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g1856 468 SUPERFAMILY Protein kinase-like (PK-like) 66 436 IPR011009 -
Sed01g1856 468 MobiDBLite consensus disorder prediction 1 33 - -
Sed01g1856 468 FunFam serine/threonine-protein kinase D6PK-like 315 440 - -
Sed01g1856 468 CDD STKc_phototropin_like 83 439 - -
Sed01g1856 468 Gene3D Phosphorylase Kinase; domain 1 441 456 - -
Sed01g1856 468 PANTHER FLIPPASE KINASE 1-RELATED 25 445 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Sed01g1856 468 MobiDBLite consensus disorder prediction 1 15 - -
Sed01g1856 468 Pfam Protein kinase domain 86 256 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1856 468 Pfam Protein kinase domain 317 422 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1856 468 MobiDBLite consensus disorder prediction 17 33 - -
Sed01g1856 468 ProSiteProfiles Protein kinase domain profile. 85 422 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1856 Sed-Chr1:13721729 Sed08g1890 Sed-Chr8:33424281 3.40E-103 dispersed
Sed01g1856 Sed-Chr1:13721729 Sed08g2642 Sed-Chr8:38606246 6.20E-214 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78633 PF00069 Pkinase 1.10E-31 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1856 - - - 0.0