Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1860 ATGGACAATGCTGATATTGAGAGCGGGGAAGACGAGCTTCACGGCCAGAGGGGAAGGAAGTACCGCCCCGTTGAAGCCCATGATCGCGCTGTTCTTGAAATGTCTTCCATGGATCCCGCCTCCACCGCGTCTTCCTCTTCCGTCCCAATGCGCCATCCTTCTCTCAAGAAGGTAAAAGTGGGTACTCAGACAGGCACTAATGAAAAAAAAGGAAACTCTCCTACTCGTATCGAAGTCAATGGCCCCCAGCATGAATCCAGGCTTGAATTGTTTGGTTTTGATTCTCTTGTGAACATTCTAGGCCTTAAGAGTATGATGGTGGAACAAATTCATGCACCTTCTAGTCCCCGAGATGGTGAGAATGTTTCTATCACTCAGCGGTTGCCAAAGTCCAATGAAGTAAAATCGGGTACAATGATGGGTGTATTTATCCCATGCTTACAGAACATATTGGGAATCATTTATTATATTCGATTTTCTTGGATTGTTGGCATGGCTGGCATTGGTGAGTCATTAGTGCTGGTGGCCTTTTGTGGTTTATGTACGTTCTTGACTGCAATTTCACTGAGTGCTATTGCAACTAATGGTGCAATGAAGGGTGGGGGGCCATATTATCTGATAGGTCGTGCCCTTGGTCCAGAGGTTGGAGTTAGCATCGGGTTGTGTTTCTTCCTCGGAAATGCAGTTGCTGGTGCTCTTTATGTGTTGGGAGCTGTTGAAACATTTTTGAATGCTGTGCCAGGTGCAGGGATATTCAGAGAGACTGTAACAAAACTTAATGGAAATGTTGAACCAGTACAAAGTCCAAGTTCACATGACTTGCAAGTTTATGGAATTATTGTGACTATTCTTCTGTGCTTCATTGTGTTTGGTGGTGTGAAAATGATTAATAGGGTCGCTCCAGCTTTCCTTATTCCAGTCTTGCTCTCAGTACTTTGCATATTTTTGGGAATTTTTCTGGCAAAGAAAAACGACCCTGCAGATGGCATCACTGGCTTGAGTATGGAATCTTTTAGAGAAAATTGGAGTTCTGATTATCAGATGACTAATAGTGCTGGAGTCCCCGATCCTCTTGGAAAAGTATATTGGAATTTCAATGCATTGGTTGGTCTTTTTTTCCCTGCCGTGACAGGAATAATGGCTGGTTCTAATAGATCAGCTTCACTGAAGGATACACAGCGTTCAATTCCTATTGGAACATTAGCTGCGACTCTTGCAACAACTGCAATGTATGTGGTCTCTGTGTTGCTGTTTGGAGCACTGGCAACCAGAAAGAAATTGTTAACAGATAGGCTTCTTAGTGCTACGGTTGCGTGGCCTTTCCCAGCATTGATTTATGTCGGAATTATTTTATCAACCCTTGGAGCTGCTCTTCAGAGCCTGACAGGAGCCCCCCGCTTACTAGCCGCCATAGCCAACGATGATATATTACCCATTCTGAACTATTTTAAAGTAGCAGATGGCAATGAGCCATACGTTGCAACCCTCTTTACTGCATTTCTCTGCATCGGATGTGTCATAATTGGGAATCTTGATCTTATCACTCCAACCGTAACCATGTTTTTCCTGTTGTGTTATGCTGGTGTGAACTTATCCTGTTTCCTTTTGGATCTACTAGATGCTCCCAGTTGGCGTCCACGATGGAAACTCCATCACTGGAGCCTCTCTCTTCTTGGAGCATCACTTTGTGTAGTGATTATGTTCTTGATCTCATGGTCATTCACGATAGTGTCTCTAGCCCTTGCAAGCCTCATATATTATTATGTGTGCCTTAGAGGTAAGGCTGGAGACTGGGGCGATGGTTTCAAGAGTGCGTATTTCCAGCTTGCTCTTCGCAGCCTTCGTTCGCTTGGAGCGAGCCAAGTTCACCCAAAGAATTGGTATCCCATACCCTTGATATTTTGCCGGCCATGGGGGAAGCTACCAGAAAATGTACCATGTCACCCTAAACTTGCAGACTTTGCAAATTGCATGAAGAAAAAAGGCCGCGGAATGTCGATATTTGTCTCCATACTAGATGGAGATTATCATGAACGTGTTGAAGATTCCAAAGCTGCCTGCAAGCAGCTTGCTACATATATTGATTACAAACGTTGTGAAGGTGTGGCTGAGATTGTTGTGGCTCCAACCATGTTTGAAGGTTTCAGAGGGATTGTTCAGACGATGGGTCTTGGAAATCTCAAGCCGAATATTATAGTCATGCGATACCCAGAAATATGGCGACGCGAAAATCTAACCGAGATTCCGGATACATTTGTTGGAATAATCAATGACTGCATTGATGCTAACAAGGCTGTTGTCATTGTTAAGGGTCTGGATGAATGGCCTAATGAATTCCAAAGGCAGTATGGAACTATAGATTTGTATTGGATTGTGAGAGATGGTGGTCTTATGCTTCTCCTCTCTCAGCTTCTCCTTACAAAGGAGAGCTTTGAAAGCTGTAAGATTCAGGTGTTCTGCATTGCCGAGGAGGAATCGGATGCCGAGGGCCTCAAAGCTGATGTGAGAAAGTTTTTGTATGATCTTCGAATGCAAGCTGAGGTGATCGTTATAACGATAAAATCATGGGACACGCAAGTGGAGGGCGGGAAACAAGACGAATCAATGGAAGCATTCATAGCTGCTCAAGGGAGGATTGCTAGTTATTTAGGCGAACTAAAGGCAACAGCTGAGAGCAGAGGAACCACACTGATGGCTGATGGGAAGCCAGTCATAGTGAATGAGAAGCAGATTGAGAAGTTTTTGGATACAACTCTCAAGTTGAACTCTACTATTCTTAGACACTCGAGGATGGCTTCGGTCGTGCTCGTAAGCCTCCCGCCACCTCCTGTCAATCATCCTGCATACTTCTTTATGGAGTACTTGGATTTGTTGGTTGAGAATGTGCCTAGGCTCTTGATCGTAAGAGGATACCGCAGAGACGTCGTAACGTTGTACACGTAG 2943 44.48 MDNADIESGEDELHGQRGRKYRPVEAHDRAVLEMSSMDPASTASSSSVPMRHPSLKKVKVGTQTGTNEKKGNSPTRIEVNGPQHESRLELFGFDSLVNILGLKSMMVEQIHAPSSPRDGENVSITQRLPKSNEVKSGTMMGVFIPCLQNILGIIYYIRFSWIVGMAGIGESLVLVAFCGLCTFLTAISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGALYVLGAVETFLNAVPGAGIFRETVTKLNGNVEPVQSPSSHDLQVYGIIVTILLCFIVFGGVKMINRVAPAFLIPVLLSVLCIFLGIFLAKKNDPADGITGLSMESFRENWSSDYQMTNSAGVPDPLGKVYWNFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLATTAMYVVSVLLFGALATRKKLLTDRLLSATVAWPFPALIYVGIILSTLGAALQSLTGAPRLLAAIANDDILPILNYFKVADGNEPYVATLFTAFLCIGCVIIGNLDLITPTVTMFFLLCYAGVNLSCFLLDLLDAPSWRPRWKLHHWSLSLLGASLCVVIMFLISWSFTIVSLALASLIYYYVCLRGKAGDWGDGFKSAYFQLALRSLRSLGASQVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHERVEDSKAACKQLATYIDYKRCEGVAEIVVAPTMFEGFRGIVQTMGLGNLKPNIIVMRYPEIWRRENLTEIPDTFVGIINDCIDANKAVVIVKGLDEWPNEFQRQYGTIDLYWIVRDGGLMLLLSQLLLTKESFESCKIQVFCIAEEESDAEGLKADVRKFLYDLRMQAEVIVITIKSWDTQVEGGKQDESMEAFIAAQGRIASYLGELKATAESRGTTLMADGKPVIVNEKQIEKFLDTTLKLNSTILRHSRMASVVLVSLPPPPVNHPAYFFMEYLDLLVENVPRLLIVRGYRRDVVTLYT 980
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13803649 13815279 + Sed0017115.1 Sed01g1860 701164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1860 980 Pfam Solute carrier family 12 779 979 IPR018491 GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0022857(InterPro)
Sed01g1860 980 Pfam Solute carrier family 12 649 770 IPR018491 GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0022857(InterPro)
Sed01g1860 980 MobiDBLite consensus disorder prediction 1 79 - -
Sed01g1860 980 Pfam Amino acid permease 141 607 IPR004841 GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g1860 980 MobiDBLite consensus disorder prediction 37 51 - -
Sed01g1860 980 MobiDBLite consensus disorder prediction 8 32 - -
Sed01g1860 980 MobiDBLite consensus disorder prediction 59 79 - -
Sed01g1860 980 FunFam Cation-chloride cotransporter 1 135 597 - -
Sed01g1860 980 PANTHER SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS 97 980 IPR004842 GO:0006811(InterPro)|GO:0006884(PANTHER)|GO:0015377(InterPro)|GO:0015379(PANTHER)|GO:0016020(InterPro)|GO:0055064(PANTHER)|GO:0055075(PANTHER)|GO:1902476(PANTHER)|GO:1990573(PANTHER)
Sed01g1860 980 NCBIfam K-Cl cotransporter 70 980 IPR004842 GO:0006811(InterPro)|GO:0015377(InterPro)|GO:0016020(InterPro)
Sed01g1860 980 Gene3D Amino acid/polyamine transporter I 134 597 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1860 Sed-Chr1:13803649 Sed08g2636 Sed-Chr8:38539621 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1860 K14427 - csv:101216218 1781.15