Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g1860 | ATGGACAATGCTGATATTGAGAGCGGGGAAGACGAGCTTCACGGCCAGAGGGGAAGGAAGTACCGCCCCGTTGAAGCCCATGATCGCGCTGTTCTTGAAATGTCTTCCATGGATCCCGCCTCCACCGCGTCTTCCTCTTCCGTCCCAATGCGCCATCCTTCTCTCAAGAAGGTAAAAGTGGGTACTCAGACAGGCACTAATGAAAAAAAAGGAAACTCTCCTACTCGTATCGAAGTCAATGGCCCCCAGCATGAATCCAGGCTTGAATTGTTTGGTTTTGATTCTCTTGTGAACATTCTAGGCCTTAAGAGTATGATGGTGGAACAAATTCATGCACCTTCTAGTCCCCGAGATGGTGAGAATGTTTCTATCACTCAGCGGTTGCCAAAGTCCAATGAAGTAAAATCGGGTACAATGATGGGTGTATTTATCCCATGCTTACAGAACATATTGGGAATCATTTATTATATTCGATTTTCTTGGATTGTTGGCATGGCTGGCATTGGTGAGTCATTAGTGCTGGTGGCCTTTTGTGGTTTATGTACGTTCTTGACTGCAATTTCACTGAGTGCTATTGCAACTAATGGTGCAATGAAGGGTGGGGGGCCATATTATCTGATAGGTCGTGCCCTTGGTCCAGAGGTTGGAGTTAGCATCGGGTTGTGTTTCTTCCTCGGAAATGCAGTTGCTGGTGCTCTTTATGTGTTGGGAGCTGTTGAAACATTTTTGAATGCTGTGCCAGGTGCAGGGATATTCAGAGAGACTGTAACAAAACTTAATGGAAATGTTGAACCAGTACAAAGTCCAAGTTCACATGACTTGCAAGTTTATGGAATTATTGTGACTATTCTTCTGTGCTTCATTGTGTTTGGTGGTGTGAAAATGATTAATAGGGTCGCTCCAGCTTTCCTTATTCCAGTCTTGCTCTCAGTACTTTGCATATTTTTGGGAATTTTTCTGGCAAAGAAAAACGACCCTGCAGATGGCATCACTGGCTTGAGTATGGAATCTTTTAGAGAAAATTGGAGTTCTGATTATCAGATGACTAATAGTGCTGGAGTCCCCGATCCTCTTGGAAAAGTATATTGGAATTTCAATGCATTGGTTGGTCTTTTTTTCCCTGCCGTGACAGGAATAATGGCTGGTTCTAATAGATCAGCTTCACTGAAGGATACACAGCGTTCAATTCCTATTGGAACATTAGCTGCGACTCTTGCAACAACTGCAATGTATGTGGTCTCTGTGTTGCTGTTTGGAGCACTGGCAACCAGAAAGAAATTGTTAACAGATAGGCTTCTTAGTGCTACGGTTGCGTGGCCTTTCCCAGCATTGATTTATGTCGGAATTATTTTATCAACCCTTGGAGCTGCTCTTCAGAGCCTGACAGGAGCCCCCCGCTTACTAGCCGCCATAGCCAACGATGATATATTACCCATTCTGAACTATTTTAAAGTAGCAGATGGCAATGAGCCATACGTTGCAACCCTCTTTACTGCATTTCTCTGCATCGGATGTGTCATAATTGGGAATCTTGATCTTATCACTCCAACCGTAACCATGTTTTTCCTGTTGTGTTATGCTGGTGTGAACTTATCCTGTTTCCTTTTGGATCTACTAGATGCTCCCAGTTGGCGTCCACGATGGAAACTCCATCACTGGAGCCTCTCTCTTCTTGGAGCATCACTTTGTGTAGTGATTATGTTCTTGATCTCATGGTCATTCACGATAGTGTCTCTAGCCCTTGCAAGCCTCATATATTATTATGTGTGCCTTAGAGGTAAGGCTGGAGACTGGGGCGATGGTTTCAAGAGTGCGTATTTCCAGCTTGCTCTTCGCAGCCTTCGTTCGCTTGGAGCGAGCCAAGTTCACCCAAAGAATTGGTATCCCATACCCTTGATATTTTGCCGGCCATGGGGGAAGCTACCAGAAAATGTACCATGTCACCCTAAACTTGCAGACTTTGCAAATTGCATGAAGAAAAAAGGCCGCGGAATGTCGATATTTGTCTCCATACTAGATGGAGATTATCATGAACGTGTTGAAGATTCCAAAGCTGCCTGCAAGCAGCTTGCTACATATATTGATTACAAACGTTGTGAAGGTGTGGCTGAGATTGTTGTGGCTCCAACCATGTTTGAAGGTTTCAGAGGGATTGTTCAGACGATGGGTCTTGGAAATCTCAAGCCGAATATTATAGTCATGCGATACCCAGAAATATGGCGACGCGAAAATCTAACCGAGATTCCGGATACATTTGTTGGAATAATCAATGACTGCATTGATGCTAACAAGGCTGTTGTCATTGTTAAGGGTCTGGATGAATGGCCTAATGAATTCCAAAGGCAGTATGGAACTATAGATTTGTATTGGATTGTGAGAGATGGTGGTCTTATGCTTCTCCTCTCTCAGCTTCTCCTTACAAAGGAGAGCTTTGAAAGCTGTAAGATTCAGGTGTTCTGCATTGCCGAGGAGGAATCGGATGCCGAGGGCCTCAAAGCTGATGTGAGAAAGTTTTTGTATGATCTTCGAATGCAAGCTGAGGTGATCGTTATAACGATAAAATCATGGGACACGCAAGTGGAGGGCGGGAAACAAGACGAATCAATGGAAGCATTCATAGCTGCTCAAGGGAGGATTGCTAGTTATTTAGGCGAACTAAAGGCAACAGCTGAGAGCAGAGGAACCACACTGATGGCTGATGGGAAGCCAGTCATAGTGAATGAGAAGCAGATTGAGAAGTTTTTGGATACAACTCTCAAGTTGAACTCTACTATTCTTAGACACTCGAGGATGGCTTCGGTCGTGCTCGTAAGCCTCCCGCCACCTCCTGTCAATCATCCTGCATACTTCTTTATGGAGTACTTGGATTTGTTGGTTGAGAATGTGCCTAGGCTCTTGATCGTAAGAGGATACCGCAGAGACGTCGTAACGTTGTACACGTAG | 2943 | 44.48 | MDNADIESGEDELHGQRGRKYRPVEAHDRAVLEMSSMDPASTASSSSVPMRHPSLKKVKVGTQTGTNEKKGNSPTRIEVNGPQHESRLELFGFDSLVNILGLKSMMVEQIHAPSSPRDGENVSITQRLPKSNEVKSGTMMGVFIPCLQNILGIIYYIRFSWIVGMAGIGESLVLVAFCGLCTFLTAISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGALYVLGAVETFLNAVPGAGIFRETVTKLNGNVEPVQSPSSHDLQVYGIIVTILLCFIVFGGVKMINRVAPAFLIPVLLSVLCIFLGIFLAKKNDPADGITGLSMESFRENWSSDYQMTNSAGVPDPLGKVYWNFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLATTAMYVVSVLLFGALATRKKLLTDRLLSATVAWPFPALIYVGIILSTLGAALQSLTGAPRLLAAIANDDILPILNYFKVADGNEPYVATLFTAFLCIGCVIIGNLDLITPTVTMFFLLCYAGVNLSCFLLDLLDAPSWRPRWKLHHWSLSLLGASLCVVIMFLISWSFTIVSLALASLIYYYVCLRGKAGDWGDGFKSAYFQLALRSLRSLGASQVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHERVEDSKAACKQLATYIDYKRCEGVAEIVVAPTMFEGFRGIVQTMGLGNLKPNIIVMRYPEIWRRENLTEIPDTFVGIINDCIDANKAVVIVKGLDEWPNEFQRQYGTIDLYWIVRDGGLMLLLSQLLLTKESFESCKIQVFCIAEEESDAEGLKADVRKFLYDLRMQAEVIVITIKSWDTQVEGGKQDESMEAFIAAQGRIASYLGELKATAESRGTTLMADGKPVIVNEKQIEKFLDTTLKLNSTILRHSRMASVVLVSLPPPPVNHPAYFFMEYLDLLVENVPRLLIVRGYRRDVVTLYT | 980 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 13803649 | 13815279 | + | Sed0017115.1 | Sed01g1860 | 701164 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g1860 | 980 | Pfam | Solute carrier family 12 | 779 | 979 | IPR018491 | GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0022857(InterPro) | |
Sed01g1860 | 980 | Pfam | Solute carrier family 12 | 649 | 770 | IPR018491 | GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0022857(InterPro) | |
Sed01g1860 | 980 | MobiDBLite | consensus disorder prediction | 1 | 79 | - | - | |
Sed01g1860 | 980 | Pfam | Amino acid permease | 141 | 607 | IPR004841 | GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed01g1860 | 980 | MobiDBLite | consensus disorder prediction | 37 | 51 | - | - | |
Sed01g1860 | 980 | MobiDBLite | consensus disorder prediction | 8 | 32 | - | - | |
Sed01g1860 | 980 | MobiDBLite | consensus disorder prediction | 59 | 79 | - | - | |
Sed01g1860 | 980 | FunFam | Cation-chloride cotransporter 1 | 135 | 597 | - | - | |
Sed01g1860 | 980 | PANTHER | SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS | 97 | 980 | IPR004842 | GO:0006811(InterPro)|GO:0006884(PANTHER)|GO:0015377(InterPro)|GO:0015379(PANTHER)|GO:0016020(InterPro)|GO:0055064(PANTHER)|GO:0055075(PANTHER)|GO:1902476(PANTHER)|GO:1990573(PANTHER) | |
Sed01g1860 | 980 | NCBIfam | K-Cl cotransporter | 70 | 980 | IPR004842 | GO:0006811(InterPro)|GO:0015377(InterPro)|GO:0016020(InterPro) | |
Sed01g1860 | 980 | Gene3D | Amino acid/polyamine transporter I | 134 | 597 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g1860 | Sed-Chr1:13803649 | Sed08g2636 | Sed-Chr8:38539621 | 0.00E+00 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g1860 | K14427 | - | csv:101216218 | 1781.15 |