Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1868 ATGGCTCTTGTTATGCATAGAGATTCTTTGAATAAGCAAATGGATACAAGTAAGTACGTGAGATATACGCCTGAGCAAGTTGATGCATTGGAGAGGGTTTATGCTGAATGCCCTAAGCCCAGTTCGTTGAAGAGGCAACAGCTCATTCGGGAGTGTCCTATTCTCTCTAATATTGAGCCTAAACAGATCAAAGTTTGGTTCCAAAATCGCAGATGTCGTGAAAAGCAAAGGAAGGAAGCTTCTCGTCTTCAAACAGTTAATAGGAAGCTGACTGCAATGAACAAGTTGTTGATGGAAGAGAATGACCGTCTGCAGAAGCAGGTCTCTCGATTAGTTTACGATAATGGATACATGAGACAGCAGCTGCATACTGCATCTGGAACAACCACGGACAATAGCTGTGAGTCCGTGGTCATGAGTGGTCAAAACCATCAACAGAAAAACTCAACTAAGCATACCCAGAAGGATGCTAATAGCCCAGCTGGTCTTCTTGCTATCGCCGAGGAGACCTTGGCAGAGTTCCTTTCCAAGGCAACAGGAACTGCTGTCGACTGGGTTCAAATGATTGGAATGAAGCCTGGTCCGGAATCAATTGGGATTGTTTCTGTTTCCCGCAACTGCAATGGGGTAGCAACACGAGCCTGTGGTTTAGTGAGTCTTGAGCCAACAAAGGTGGCTGAAATTCTCAAAGATCGCCTATCATGGTTTCGTGACTGCCGTTGTGTTGATGTATTGAGTGTAATCTCTACAGGAAATGGGGGGACTATAGAACTCTTATATATGCAGACATATGCACCTACAACTTTAGCCACAGCACGTGACTTTTGGACTCTCCGTTACACCACTAGCTTGGAAGATGGGAGCATTGTGATATGTGAGAGATCATTACCGATGTCTACCGGTGGCCCATCAGGGCCTCCTCAATCCACTTTTGTTAGAGCCGAAATGCTTCCAAGCGGGTATCTTATTCGTTCTTGTGAGGGTGGTTCCCTTATTCACATTGTTGATCATGTTGATTTAGATGCTTGGAGTGTTCCGGAAGTTCTAAGGCCACTTTATGAATCAACAAAGATTCTAGCTCAGAGAATGACTGTAGCTGCCTTGCGCTATGTTCGGCAAATTGCTCTAGAGGCAAGTGGAGAAATCCAATTGGGTGGGGGCCGCCAACCGGCAGTTTTAAGAACTTTCAGTCAAAGGCTCTGCAGGGGTTTTAATGATGCAGTAAATGGATTTGTGGATGATGGTTGGTCGCTTATGGACGGTGATGGAGTAGAGGATGTAACAGTTGTTATTAATTCATCTCCAAACAAATTCCTCGGTTCGCAATATAACACGTCAATGCACCCTACTTTTGGAGGTGTGTTGTGTGCCAAGGCATCAATGTTGCTGCAGAATGTCCCCCCTGCTCTGCTTGTTCGTTTCCTACGGGAGCATCGTTCAGAATGGGCTGATTATGGGGTCGATGCATACTCTGCTGCATGTCTTAAATCCAGTGCATATGCTGTCCCGTGTACAAGACCCGGTGGCTTTCCGAGTGGTCAGGTCATTTTACCTCTTGCGCACACTGTTGAGAACGAGGAGTTCTTGGAGGTCGTTCGGTTAGAGGGACATGCTATGTTCCCGGAAGAAGCTGCCTTAAGTGGACGGGATATGTACTTATTGCAGCTCTGTAGTGGGGTTGATGAAAATGCAGTTGGTGGCTGTGCTCAGCTTGTATTTGCACCTATAGACGAATCCTTTGCCGATGATGCTCCCTTGCTGTCGTCTGGTTTTCGCGTCATACCATTGGAGTCCAAAACAGACGCACCTGCTGCTACTCGAACTTTGGATCTGGCATCTACTCTAGAAGTCCGACCTGGAAATGCTCGTCCAGGCGGTGAAACTGATGCTGCAAATTATAACCTCAGGTCAGTCTTGACTATTGCATTCCAATTCACTTTTGAGAACCACATGCGGGACAGTGTGGCTGCTATGGCGAGACAATATGTGCGAGCCGTTGTGGGATCAGTTCAGAGGGTTGCCATGGCTATCGCCCCCCCACAGCTTGGCTCCCAACTTGGTCCAAAAAGCCTTCCCGGCTCCCCGGAGGCTCTCACATTGGCCCAGTGGATCTCAAGAAGTTACAGGATCCACACAGGGGCAGAGCTCTTTCAGGCTGAATCCCAGTCAGATGATGCTATCTTGAAGCAGCTTTGGCACCATTCAGATGCAATCTTGTGCTGCTCAGTAAAAAATAATGCATCTACCGTGTTCACATTTGCAAACCAAGCTGGACTCGACATGCTCGAAACCACCCTTGTCGCTCTTCAAGATATAATGCTTGATAAGATCCTCGACAATGCTGGTCGGAAGATACTATGCTCCGAGTTCTCCAAGATAATGCATCAGGGATTTGCCTACCTTCCAGCAGGTATATGTGTCTCGAGTATGGGCAGGCCGGTGTCATACGAACAGGCAATTGCATGGAAAGTTCTGAATGATGATGATGTCCATCACTGTCTGGCTTTTGCGTTCGTTAACTGGTCCTTTATGTGA 2535 47.1 MALVMHRDSLNKQMDTSKYVRYTPEQVDALERVYAECPKPSSLKRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSRLVYDNGYMRQQLHTASGTTTDNSCESVVMSGQNHQQKNSTKHTQKDANSPAGLLAIAEETLAEFLSKATGTAVDWVQMIGMKPGPESIGIVSVSRNCNGVATRACGLVSLEPTKVAEILKDRLSWFRDCRCVDVLSVISTGNGGTIELLYMQTYAPTTLATARDFWTLRYTTSLEDGSIVICERSLPMSTGGPSGPPQSTFVRAEMLPSGYLIRSCEGGSLIHIVDHVDLDAWSVPEVLRPLYESTKILAQRMTVAALRYVRQIALEASGEIQLGGGRQPAVLRTFSQRLCRGFNDAVNGFVDDGWSLMDGDGVEDVTVVINSSPNKFLGSQYNTSMHPTFGGVLCAKASMLLQNVPPALLVRFLREHRSEWADYGVDAYSAACLKSSAYAVPCTRPGGFPSGQVILPLAHTVENEEFLEVVRLEGHAMFPEEAALSGRDMYLLQLCSGVDENAVGGCAQLVFAPIDESFADDAPLLSSGFRVIPLESKTDAPAATRTLDLASTLEVRPGNARPGGETDAANYNLRSVLTIAFQFTFENHMRDSVAAMARQYVRAVVGSVQRVAMAIAPPQLGSQLGPKSLPGSPEALTLAQWISRSYRIHTGAELFQAESQSDDAILKQLWHHSDAILCCSVKNNASTVFTFANQAGLDMLETTLVALQDIMLDKILDNAGRKILCSEFSKIMHQGFAYLPAGICVSSMGRPVSYEQAIAWKVLNDDDVHHCLAFAFVNWSFM 844
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13866318 13874373 - Sed0012002.1 Sed01g1868 701172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1868 844 Pfam START domain 166 373 IPR002913 GO:0008289(InterPro)
Sed01g1868 844 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677(InterPro)
Sed01g1868 844 SUPERFAMILY Homeodomain-like 18 80 IPR009057 -
Sed01g1868 844 CDD START_ArGLABRA2_like 160 375 - -
Sed01g1868 844 SMART START_1 165 374 IPR002913 GO:0008289(InterPro)
Sed01g1868 844 FunFam Homeobox-leucine zipper protein REVOLUTA 18 73 - -
Sed01g1868 844 Coils Coil 87 107 - -
Sed01g1868 844 Gene3D - 10 84 - -
Sed01g1868 844 Pfam Homeodomain 18 76 IPR001356 GO:0003677(InterPro)
Sed01g1868 844 Gene3D - 184 369 IPR023393 -
Sed01g1868 844 SUPERFAMILY Bet v1-like 166 373 - -
Sed01g1868 844 CDD bZIP 70 109 - -
Sed01g1868 844 ProSiteProfiles START domain profile. 156 374 IPR002913 GO:0008289(InterPro)
Sed01g1868 844 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 12 844 IPR044830 GO:0003700(InterPro)
Sed01g1868 844 MobiDBLite consensus disorder prediction 137 157 - -
Sed01g1868 844 CDD homeodomain 18 78 IPR001356 GO:0003677(InterPro)
Sed01g1868 844 Pfam MEKHLA domain 699 843 IPR013978 -
Sed01g1868 844 SMART HOX_1 15 81 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1868 Sed-Chr1:13866318 Sed14g1615 Sed-Chr14:24352331 0.00E+00 dispersed
Sed01g1868 Sed-Chr1:13866318 Sed10g0068 Sed-Chr10:421112 0.00E+00 wgd
Sed01g1868 Sed-Chr1:13866318 Sed08g2628 Sed-Chr8:38501185 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37234 PF01852 START 1.70E-49 CL0209 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1868 K09338 - csv:101211318 1564.28