Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1871 ATGAGTAAATTTTCATCGGATTTCAGGAGACCTGAATCAGCTAAAAGTAGATTAAAAGGTTTATTGCTTCAGAAAGATAATCATCTTTGTGCAGATTGTGGTGCCTCGGATCCTAAATGGGCCTCCGCTAATATTGGGGTGTTTATATGCTTAAAATGTAGTGGTGTGCACAGAAGCCTTGGAACACATATATCGAAGGTCTTATCAATAACATTGGATGAATGGTCTGATGATGAGATTGATGCGATGATAGAGGTTGGAGGAAATGGTTCTGCTAATGCAATATATGAGGCCTTTATCCCTGTTGGGTATACAAAGCCTGGACCAAGTGCCAGCCTCGAGGAGCGTTCGAAGTTCATTCGGTCTAAATATGAACTTCAAGAATTTTTAAAACCTAGCTTGCGAATTGTATCCAATAACTCCTCGAAGAGTCCTGAGGAGCCAAGTTATTTTCAAGAGATTTCCGATAGCTTTCGAAGCTCAAACTCTTCACAAAAATCTCCACAAGAAGGCATGGTTGAATTTATAGGATTATTGAAAGTCAAGGTGATTAAAGGCACAAACTTAGCCGTGAGAGATTTGAAGTCCAGTGATCCTTTCATTACCATGACTCTTGGACAACAGACTGCTAAAACAACCGTGATAAAGAGCAACTTGAATCCAGTTTGGAACGAGGAACTCATGCTGTCAGTTCCTCAAGAATACGGACCGTTGAAGTTGCAAGTGTTCGATTACGACGTAATTTCAACTAATGACTTAATGGGCGAAGCAGAAATCGACCTCCAGCCGATGATAACATCAGCAATGGCATTTGGAGATGCTGATTTCTATGAGAATATGCAGATAGGAAAATGGTTGAAGTCGGATGACAACGCCCTTATCGACGATAGTGCTGTCAATATCGTGGACGGGAAGGTGAAACAAGAGGTGTCACTCAAGCTCCAAAATGTAGAATCAGGTGAGGTGTACTTGGAACTAGAATGGATGCCCCTTGATCAGTAG 1002 41.42 MSKFSSDFRRPESAKSRLKGLLLQKDNHLCADCGASDPKWASANIGVFICLKCSGVHRSLGTHISKVLSITLDEWSDDEIDAMIEVGGNGSANAIYEAFIPVGYTKPGPSASLEERSKFIRSKYELQEFLKPSLRIVSNNSSKSPEEPSYFQEISDSFRSSNSSQKSPQEGMVEFIGLLKVKVIKGTNLAVRDLKSSDPFITMTLGQQTAKTTVIKSNLNPVWNEELMLSVPQEYGPLKLQVFDYDVISTNDLMGEAEIDLQPMITSAMAFGDADFYENMQIGKWLKSDDNALIDDSAVNIVDGKVKQEVSLKLQNVESGEVYLELEWMPLDQ 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13889692 13893639 + Sed0019526.3 Sed01g1871 701175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1871 333 ProSiteProfiles ARF GTPase-activating proteins domain profile. 15 143 IPR001164 GO:0005096(InterPro)
Sed01g1871 333 Gene3D Arf GTPase activating protein 2 136 IPR038508 -
Sed01g1871 333 PRINTS HIV Rev interacting protein signature 27 46 IPR001164 GO:0005096(InterPro)
Sed01g1871 333 PRINTS HIV Rev interacting protein signature 46 63 IPR001164 GO:0005096(InterPro)
Sed01g1871 333 PRINTS HIV Rev interacting protein signature 67 88 IPR001164 GO:0005096(InterPro)
Sed01g1871 333 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 6 333 IPR044518 GO:0005096(InterPro)|GO:0005543(InterPro)
Sed01g1871 333 Pfam Putative GTPase activating protein for Arf 17 131 IPR001164 GO:0005096(InterPro)
Sed01g1871 333 CDD ArfGap 18 124 - -
Sed01g1871 333 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 177 328 IPR035892 -
Sed01g1871 333 SMART arf_gap_3 15 137 IPR001164 GO:0005096(InterPro)
Sed01g1871 333 MobiDBLite consensus disorder prediction 138 167 - -
Sed01g1871 333 Gene3D C2 domain 175 333 IPR035892 -
Sed01g1871 333 Pfam C2 domain 177 264 IPR000008 -
Sed01g1871 333 SMART C2_3c 178 273 IPR000008 -
Sed01g1871 333 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 175 333 - -
Sed01g1871 333 ProSiteProfiles C2 domain profile. 160 276 IPR000008 -
Sed01g1871 333 SUPERFAMILY ArfGap/RecO-like zinc finger 15 132 IPR037278 -
Sed01g1871 333 CDD C2_ArfGAP 176 320 - -
Sed01g1871 333 FunFam Arf-GAP with dual PH domain-containing protein 1 10 138 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1869 Sed-Chr1:13889692 Sed01g1871 Sed-Chr1:13889692 1.20E-187 dispersed
Sed01g1871 Sed-Chr1:13889692 Sed08g2623 Sed-Chr8:38485567 3.90E-162 dispersed
Sed01g1870 Sed-Chr1:13889692 Sed01g1871 Sed-Chr1:13889692 1.20E-187 tandem
Sed01g1871 Sed-Chr1:13889692 Sed01g1872 Sed-Chr1:13889692 1.50E-137 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1871 K12486 - csv:101211569 585.874