Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1872 ATGATAGAGGTTGGAGGAAATGGTTCTGCTAATGCAATATATGAGGCCTTTATCCCTGTTGGGTATACAAAGCCTGGACCAAGTGCCAGCCTCGAGGAGCGTTCGAAGTTCATTCGGTCTAAATATGAACTTCAAGAATTTTTAAAACCTAGCTTGCGAATTGTATCCAATAACTCCTCGAAGAGTCCTGAGGAGCCAAGTTATTTTCAAGAGATTTCCGATAGCTTTCGAAGCTCAAACTCTTCACAAAAATCTCCACAAGAAGGCATGGTTGAATTTATAGGATTATTGAAAGTCAAGGTGATTAAAGGCACAAACTTAGCCGTGAGAGATTTGAAGTCCAGTGATCCTTTCATTACCATGACTCTTGGACAACAGACTGCTAAAACAACCGTGATAAAGAGCAACTTGAATCCAGTTTGGAACGAGGAACTCATGCTGTCAGTTCCTCAAGAATACGGACCGTTGAAGTTGCAAGTGTTCGATTACGACGTAATTTCAACTAATGACTTAATGGGCGAAGCAGAAATCGACCTCCAGCCGATGATAACATCAGCAATGGCATTTGGAGATGCTGATTTCTATGAGAATATGCAGATAGGAAAATGGTTGAAGTCGGATGACAACGCCCTTATCGACGATAGTGCTGTCAATATCGTGGACGGGAAGGTGAAACAAGAGGTGTCACTCAAGCTCCAAAATGTAGAATCAGGTGAGGTGTACTTGGAACTAGAATGGATGCCCCTTGATCAGTAG 756 42.33 MIEVGGNGSANAIYEAFIPVGYTKPGPSASLEERSKFIRSKYELQEFLKPSLRIVSNNSSKSPEEPSYFQEISDSFRSSNSSQKSPQEGMVEFIGLLKVKVIKGTNLAVRDLKSSDPFITMTLGQQTAKTTVIKSNLNPVWNEELMLSVPQEYGPLKLQVFDYDVISTNDLMGEAEIDLQPMITSAMAFGDADFYENMQIGKWLKSDDNALIDDSAVNIVDGKVKQEVSLKLQNVESGEVYLELEWMPLDQ 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13889692 13893639 + Sed0019526.4 Sed01g1872 701176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1872 251 MobiDBLite consensus disorder prediction 56 85 - -
Sed01g1872 251 Pfam C2 domain 95 182 IPR000008 -
Sed01g1872 251 Gene3D C2 domain 93 251 IPR035892 -
Sed01g1872 251 SUPERFAMILY ArfGap/RecO-like zinc finger 2 50 IPR037278 -
Sed01g1872 251 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 1 251 IPR044518 GO:0005096(InterPro)|GO:0005543(InterPro)
Sed01g1872 251 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 93 251 - -
Sed01g1872 251 CDD C2_ArfGAP 94 238 - -
Sed01g1872 251 ProSiteProfiles C2 domain profile. 78 194 IPR000008 -
Sed01g1872 251 Gene3D Arf GTPase activating protein 1 54 IPR038508 -
Sed01g1872 251 SMART C2_3c 96 191 IPR000008 -
Sed01g1872 251 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 95 246 IPR035892 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1872 Sed-Chr1:13889692 Sed08g2623 Sed-Chr8:38485567 1.60E-120 dispersed
Sed01g1871 Sed-Chr1:13889692 Sed01g1872 Sed-Chr1:13889692 1.50E-137 tandem
Sed01g1872 Sed-Chr1:13889692 Sed01g1873 Sed-Chr1:13889692 1.50E-137 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1872 K12486 - csv:101211569 437.958