Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g1873 | ATGATAGAGGTTGGAGGAAATGGTTCTGCTAATGCAATATATGAGGCCTTTATCCCTGTTGGGTATACAAAGCCTGGACCAAGTGCCAGCCTCGAGGAGCGTTCGAAGTTCATTCGGTCTAAATATGAACTTCAAGAATTTTTAAAACCTAGCTTGCGAATTGTATCCAATAACTCCTCGAAGAGTCCTGAGGAGCCAAGTTATTTTCAAGAGATTTCCGATAGCTTTCGAAGCTCAAACTCTTCACAAAAATCTCCACAAGAAGGCATGGTTGAATTTATAGGATTATTGAAAGTCAAGGTGATTAAAGGCACAAACTTAGCCGTGAGAGATTTGAAGTCCAGTGATCCTTTCATTACCATGACTCTTGGACAACAGACTGCTAAAACAACCGTGATAAAGAGCAACTTGAATCCAGTTTGGAACGAGGAACTCATGCTGTCAGTTCCTCAAGAATACGGACCGTTGAAGTTGCAAGTGTTCGATTACGACGTAATTTCAACTAATGACTTAATGGGCGAAGCAGAAATCGACCTCCAGCCGATGATAACATCAGCAATGGCATTTGGAGATGCTGATTTCTATGAGAATATGCAGATAGGAAAATGGTTGAAGTCGGATGACAACGCCCTTATCGACGATAGTGCTGTCAATATCGTGGACGGGAAGGTGAAACAAGAGGTGTCACTCAAGCTCCAAAATGTAGAATCAGGTGAGGTGTACTTGGAACTAGAATGGATGCCCCTTGATCAGTAG | 756 | 42.33 | MIEVGGNGSANAIYEAFIPVGYTKPGPSASLEERSKFIRSKYELQEFLKPSLRIVSNNSSKSPEEPSYFQEISDSFRSSNSSQKSPQEGMVEFIGLLKVKVIKGTNLAVRDLKSSDPFITMTLGQQTAKTTVIKSNLNPVWNEELMLSVPQEYGPLKLQVFDYDVISTNDLMGEAEIDLQPMITSAMAFGDADFYENMQIGKWLKSDDNALIDDSAVNIVDGKVKQEVSLKLQNVESGEVYLELEWMPLDQ | 251 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 13889692 | 13893639 | + | Sed0019526.5 | Sed01g1873 | 701177 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g1873 | 251 | MobiDBLite | consensus disorder prediction | 56 | 85 | - | - | |
Sed01g1873 | 251 | Pfam | C2 domain | 95 | 182 | IPR000008 | - | |
Sed01g1873 | 251 | Gene3D | C2 domain | 93 | 251 | IPR035892 | - | |
Sed01g1873 | 251 | SUPERFAMILY | ArfGap/RecO-like zinc finger | 2 | 50 | IPR037278 | - | |
Sed01g1873 | 251 | PANTHER | ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 | 1 | 251 | IPR044518 | GO:0005096(InterPro)|GO:0005543(InterPro) | |
Sed01g1873 | 251 | FunFam | ADP-ribosylation factor GTPase-activating protein AGD12 | 93 | 251 | - | - | |
Sed01g1873 | 251 | CDD | C2_ArfGAP | 94 | 238 | - | - | |
Sed01g1873 | 251 | ProSiteProfiles | C2 domain profile. | 78 | 194 | IPR000008 | - | |
Sed01g1873 | 251 | Gene3D | Arf GTPase activating protein | 1 | 54 | IPR038508 | - | |
Sed01g1873 | 251 | SMART | C2_3c | 96 | 191 | IPR000008 | - | |
Sed01g1873 | 251 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 95 | 246 | IPR035892 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g1873 | Sed-Chr1:13889692 | Sed08g2623 | Sed-Chr8:38485567 | 1.60E-120 | dispersed | |
Sed01g1872 | Sed-Chr1:13889692 | Sed01g1873 | Sed-Chr1:13889692 | 1.50E-137 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g1873 | K12486 | - | csv:101211569 | 437.958 |