Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1879 ATGTCTCTGCTCCGACCTTACGGTAAGGTCGACGAAAACGACCAACTGAGGCTCGACGCTAACCGAAGGACTCGGAGGAGGATAGCTGTCATTGTATTGTCCTCTGTTGTTCTTGTAGCTGTTGTTGTTGGTGTTGTGGTTGGGACAAGAAATGGTTCAAAAAATGATGATACCAACAATCACAATGATGCTCTTTCAACTTCCATCAAAGCAGTTTGTGATGAGACTATGTATCCTGATACTTGTTACAATTCTTTTGCCCCTTTCGCTAACTTGAGCCACCTCGACCCCGGCCAGATCTCCAAGCTTTCGGTTCAATTGGCACTCGGAGAATTGTCGCGAGTAGCCGACATCATTTTCGAGCATGGCATTACCAATTCAACTGACAATAAGACCATATTGGCTTTGGAGAGTTGTCATGAGCTTTTGGATTTGGCAATTGATCATTTGAATATCTCAATGTCTTCTAGTGAGATTACATTGCTGAAAGCTGTGGATGATTTGAAAACATGGCTAACTTCAGCAGCTACTTACCAACAGACTTGTATTGACGACCTCGAGGATGTCGATTCGGAGTTGACGAACATCGTTGCGAGTTACTTGAAGAACTCCACTGAATTGACCAGCAATGGTATTGCCATTGTCTCCTTCTTTTCGAAGCTTGCAGATTCTTTCAGTCTACGGCGGTTGATGAGTCATGAAGATCATGGAAGCAATGGGGATTGGGCGCGCCCGATACTCCGAAAGCTCGCTCAGAAAGATCTCAGGAAGCAGGCCGACATTGTCGTAGCGAGAGATGGTTCGGGGAAGTACAAAACAATCAGTGCAGCTCTCGAGGCTGTTCCTGATAAGAGCAAGAAGAGAACTGTGATTTATGTGAAAAAGGGAGTTTATAAGGAGAATGTTGAAGTTGTTAAGAACAAATGGAATGTGGTAATGATTGGAGATGGAATGAACTCAACCACAGTAACTGGCAAACTCAATTTCATAGATGGAACTCCAACATTTCAAACTGCAACATTTGCTGCAAAGGGAAAAGGCTTCATTGCCATAGACATGGGATTCAAAAACACGGCTGGACCGAGTAAACACCAGGCAGTCGCTCTGATGTCGACATCCGACCAATCAATCTTCTACCGTTGTGAAATGGATGCGTACCAAGACACTCTCTACGCGCACTCCAACCGCCAATTCTACCGTGAATGCAAGGTTTCGGGGACAGTCGATTTCATCTTTGGAAACTCAGCAGTAGTCCTACAAAACTGCAGCATTACTCCCAGGTTGCCTATGTTAGGCCAAAAGAACACAATCACTGCTCAAGGCAAGTTTGATCCCAATCAAAACACTGGCATTTCGATACAAGGTTCTTCGATCTATCCGTTCGAGAACTTGAACATTACTGAAACTTACCTCGGTCGACCATGGAAGAACTACTCGACGACGGTGTTTATGCAGAGCTCTTTGGGGAGCTTGATTCACCCAACTGGCTGGCTGCCTTGGGTTGGAACATCAGCACCAGACACCATTTTCTATGCAGAGTTTCAAAACTATGGTCCTGGTTCTTCAACAACCAAAAGAGTCAAATGGAAAGGAGTGAAGAACATTGATACCAAAACTGCCAAAAAGTTCACAGTTTCCTCTTTTATTGATGGGAAAGATTGGATCTCAAAGGCACAAATCCCTTTCATATCCAGCCTTTGA 1701 44.44 MSLLRPYGKVDENDQLRLDANRRTRRRIAVIVLSSVVLVAVVVGVVVGTRNGSKNDDTNNHNDALSTSIKAVCDETMYPDTCYNSFAPFANLSHLDPGQISKLSVQLALGELSRVADIIFEHGITNSTDNKTILALESCHELLDLAIDHLNISMSSSEITLLKAVDDLKTWLTSAATYQQTCIDDLEDVDSELTNIVASYLKNSTELTSNGIAIVSFFSKLADSFSLRRLMSHEDHGSNGDWARPILRKLAQKDLRKQADIVVARDGSGKYKTISAALEAVPDKSKKRTVIYVKKGVYKENVEVVKNKWNVVMIGDGMNSTTVTGKLNFIDGTPTFQTATFAAKGKGFIAIDMGFKNTAGPSKHQAVALMSTSDQSIFYRCEMDAYQDTLYAHSNRQFYRECKVSGTVDFIFGNSAVVLQNCSITPRLPMLGQKNTITAQGKFDPNQNTGISIQGSSIYPFENLNITETYLGRPWKNYSTTVFMQSSLGSLIHPTGWLPWVGTSAPDTIFYAEFQNYGPGSSTTKRVKWKGVKNIDTKTAKKFTVSSFIDGKDWISKAQIPFISSL 566
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13924973 13927214 + Sed0020004.1 Sed01g1879 701183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1879 566 FunFam Pectinesterase 254 566 - -
Sed01g1879 566 Gene3D Invertase/pectin methylesterase inhibitor family protein 66 218 IPR035513 -
Sed01g1879 566 ProSitePatterns Pectinesterase signature 1. 285 304 IPR018040 -
Sed01g1879 566 Pfam Plant invertase/pectin methylesterase inhibitor 68 214 IPR006501 GO:0004857(InterPro)
Sed01g1879 566 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 68 219 IPR035513 -
Sed01g1879 566 PANTHER PECTINESTERASE 27 557 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Sed01g1879 566 SMART PMEI_2 64 214 IPR006501 GO:0004857(InterPro)
Sed01g1879 566 NCBIfam pectinesterase inhibitor domain 55 215 IPR006501 GO:0004857(InterPro)
Sed01g1879 566 Gene3D - 255 566 IPR012334 -
Sed01g1879 566 Pfam Pectinesterase 260 551 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Sed01g1879 566 CDD PMEI-like_3 71 220 - -
Sed01g1879 566 ProSitePatterns Pectinesterase signature 2. 404 413 IPR033131 -
Sed01g1879 566 SUPERFAMILY Pectin lyase-like 258 563 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1879 Sed-Chr1:13924973 Sed06g0037 Sed-Chr6:219585 3.80E-125 dispersed
Sed01g1879 Sed-Chr1:13924973 Sed08g2620 Sed-Chr8:38465075 4.90E-266 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1879 - - - 0.0