Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1923 ATGGACCAGAATAAATTGGGAGCAGATTCTCATGCAAAAGGGGTTCATTCTTTCAAGAGCAGCCATAAAAGTTACCAGATTGTTGAGGGGTTAGGAAGTCCCCACCATTATAAGATTTCAGCGAGATGGGACCCGGATGAAGCATGCAGGCCTTTAATTGACGAAGCACCTGTATTTTATCCAACTGTGGAGGAATTTGAAGATACACTTGGGTACATAGCTAAAATTCGCCCTCAAGCAGAATCTTATGGTATATGCCGGATTGTCCCTCCGTCTTCTTGGAATCCACCATGTGTTCTCAAGGAGAAACTTATATGGGAAAATGCCAAATTCTCTACTCGGATTCAGCAAGTTGATTTGCTACAAAATAGGGAGCCCATGAAAAAGAAAAGTAGAGGTCGAAAACGCAAGCGAAGGAAGCACTCAAAAGCAGGGGCATCAGCTAGAAGCACCAATCTTGGTGTTGAAGCAAACACTACTTCTGAGTCTGATGAAAAATTTGGATTCAACTCTGGGTCAGACTATACACTCGAAGAATTCCAGGCATATGCAGACTGTTTTAAGGAATCATATTTTGGAACTAAGCAGGCTCAAGAGAATTTAAATACGGATCTCGAATCAAGCAAGATAAGGGACCCTTCTGTTGAGGACATTGAGGGTGAATACTGGCGGATTGTTGAGAAGTCTACAGATGAGGTTGAGGTTTACTATGGAGCTGATATAGAATCAGCAACATTCGTTAGTGGCTTTCCCAAGGCCTCATCCACAGTAACTGAAGGAAATTCAGATCCGTATGTAAAGTCGGGTTGGAATCTGAATAACTTCCCTCGCTTGCCCGGATCTGTTCTCTGTTTCGAGGAAAGTGATATATCTGGAGTTCTAGTTCCATGGCTCTATGTTGGAATGTGCTTTTCTTCATTTTGTTGGCATGTTGAAGACCATCATCTTTACTCTTTAAACTATATGCATTGGGGTGATCCAAAATTATGGTATGGAGTTCCGGGAAGCCACGCACCATCTTTAGAAGCTGCAATGAAAAAACATTTGCCTGATTTATTTGAAGAACAGCCAGATTTACTTCATGAATTGGTCACTCAATTATCTCCTTCAGTACTCAAAGCTGAAGGAGTACCTGTCTATCGAGTGGTCCAAAATTCTAGGGAGTTTGTTCTTACATTTCCAAGGGCATATCACGCAGGATTTAATTGTGGTTTCAACTGTGCTGAGGCTGTGAATGTGGCACCGGTCGACTGGTTGTTTCATGGCCAAAATGCTGTAGAACTTTATAGTGCACAACGACACAGAACATCGCTTTCACATGATAAGTTGTTATTTGGATCAGCTCGGGAAGCTGCTCAAGCCCTTTGGGAGCGATTAGTTCGAGAAAATGTAACTCCAAGTAATCGAAGTTGGCAAAGTGTGTGTGGAAAAGATGGAGATCTTACAAAAGCGATGAAGACAAGGGTTAAGATGGAGGAGGAAAGAATGAATTGCCTTCCAACTCTTATGAAGCAGCAAAAGATGGAAAGTGAGGCTGATTTCAAAAGTGAGAGAGAGTGCTATGCCTGCTTCTACGACTTATATCTTTCTTCAACCTCGTGCAAGTGTTCCCCTGATCGATTCTCATGCCTTAAGCATGCTGGTAACTTCTGCTCGTGTCCAGTAGAGGAAAGGTGCGTGCTCTTTCGCTATAGTATAGATGAGCTGCACGCACTTGTTGGAGCATTAGAAGGGGAAATAGATGCCATTAAAGAATGGGCCTCAAGATACTGTAAAATGGAAAAGGACAATGAGTCTGTAGCTAAGGTGGAGTTGCACAGCGGATTCATTGAAAAACCATATAGGTGCCCAGAAATAATAGATAAGTTAAAAAGAACGGATGCCCCATGCAGCTCATACAGTCATGCTTCTTCAGAAGTAGTGCAATCAGAGTCTCATCGAGGTTCGCGCAGCTTAAATACTTCCCACCTTAGTTCAGATAGCCAGAATGACATTGTGAATAGTGAAGTTATGGTAATAAAGAAAGAAGAGAAGGCAGGACATGAGTGCTGTTTTGATTTGAACCTTGAAATAATTTCTGAAGACAACGATAGCTGTGGTTGCCTCGAATCTGATAGCAAGATAGTAATTGATTTGGAGAAAACGTACACTTCGGTATATGAAGAAAAAGGTGCTTGTAAAGCAGCACATGAATCAGATTTAATGGAACTCGACACTGGTAATGTAAACACTTCACTGGCTATGGATTACTCAAGTTCAAAAGATGGTGTGAGAGTGTGCGGATCGAATGGTAATAAGTTGTTTGGAGTTGTTCTTTCGCAGTCGCAGCCAGTATATGCATCTAACAGTTCCTCAGAAGTAGAAACTCTAAAATACTCGGATAAAAGGATACCATCTTGGCCTAGTTCTCCTTGGAGTTTGGTTCCCTTTGTTGAACCTATAAATATTGGAACAATTATGTTCGGAAAGCTTTGGCACTGCAATAAGGCCATATTTCCAAAAGGATTTAGAAGCCGAGTGAAATTCTTTAGCGTGCTTAATCCAACGAATATTGTCAACTACACGTCCGAGGTTCTTGATGGCGGGCTTCTGGGACCTCTATTCAAGGTTACCTTGGATGAATCTCCCAGTGAGAACTTCACCAATGATGCCTCTGCAACCAAATGCTGGGACATGGTAGTACAGAGAATAAACCTAGAAATCGAAAGACAGAACCTTAGATTGGGAGAAACAGCTCCTTTGCAGCCTTTGGAGGAAGTCAATGGACTTGAAATGTTTGGATTTCTTTCACCTCAAGTCATTCAGGCTATCGAGGCCCTTGACCCTAAACATCGGTGTCTGGAGTACTGGAATCACCGGCATCACACCGTACCCGAAAATTCAGGTGACAACACTAACTGCAATAGTTCTGTTTTAAGATTAGATTTCTCTTCGTTGCAAACAAGTGCAACTGCTTTTGATATCAATAGGGAAGAGGATGAGAATGTCAATCCAACTATAGGAGTGGAAGGGCATCATCAAAATGAAGAGGCTCGGTCTGTTATAAAGGGACTTTTAAATAAAGCAAGCCCTCAAGAATTAAGAGTGCCGAGAAGCATATTCTGCACAGAACAACTGCAAAACTACTGA 3129 41.99 MDQNKLGADSHAKGVHSFKSSHKSYQIVEGLGSPHHYKISARWDPDEACRPLIDEAPVFYPTVEEFEDTLGYIAKIRPQAESYGICRIVPPSSWNPPCVLKEKLIWENAKFSTRIQQVDLLQNREPMKKKSRGRKRKRRKHSKAGASARSTNLGVEANTTSESDEKFGFNSGSDYTLEEFQAYADCFKESYFGTKQAQENLNTDLESSKIRDPSVEDIEGEYWRIVEKSTDEVEVYYGADIESATFVSGFPKASSTVTEGNSDPYVKSGWNLNNFPRLPGSVLCFEESDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYMHWGDPKLWYGVPGSHAPSLEAAMKKHLPDLFEEQPDLLHELVTQLSPSVLKAEGVPVYRVVQNSREFVLTFPRAYHAGFNCGFNCAEAVNVAPVDWLFHGQNAVELYSAQRHRTSLSHDKLLFGSAREAAQALWERLVRENVTPSNRSWQSVCGKDGDLTKAMKTRVKMEEERMNCLPTLMKQQKMESEADFKSERECYACFYDLYLSSTSCKCSPDRFSCLKHAGNFCSCPVEERCVLFRYSIDELHALVGALEGEIDAIKEWASRYCKMEKDNESVAKVELHSGFIEKPYRCPEIIDKLKRTDAPCSSYSHASSEVVQSESHRGSRSLNTSHLSSDSQNDIVNSEVMVIKKEEKAGHECCFDLNLEIISEDNDSCGCLESDSKIVIDLEKTYTSVYEEKGACKAAHESDLMELDTGNVNTSLAMDYSSSKDGVRVCGSNGNKLFGVVLSQSQPVYASNSSSEVETLKYSDKRIPSWPSSPWSLVPFVEPINIGTIMFGKLWHCNKAIFPKGFRSRVKFFSVLNPTNIVNYTSEVLDGGLLGPLFKVTLDESPSENFTNDASATKCWDMVVQRINLEIERQNLRLGETAPLQPLEEVNGLEMFGFLSPQVIQAIEALDPKHRCLEYWNHRHHTVPENSGDNTNCNSSVLRLDFSSLQTSATAFDINREEDENVNPTIGVEGHHQNEEARSVIKGLLNKASPQELRVPRSIFCTEQLQNY 1042
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14305168 14312420 - Sed0011729.1 Sed01g1923 701227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1923 1042 Pfam F/Y rich C-terminus 865 955 IPR003889 GO:0005634(InterPro)
Sed01g1923 1042 Gene3D Cupin 41 414 - -
Sed01g1923 1042 Pfam JmjC domain, hydroxylase 297 413 IPR003347 -
Sed01g1923 1042 Pfam F/Y-rich N-terminus 814 861 IPR003888 GO:0005634(InterPro)
Sed01g1923 1042 ProSiteProfiles FYR domain FYRC motif profile. 863 954 IPR003889 GO:0005634(InterPro)
Sed01g1923 1042 ProSiteProfiles FYR domain FYRN motif profile. 803 861 IPR003888 GO:0005634(InterPro)
Sed01g1923 1042 MobiDBLite consensus disorder prediction 146 163 - -
Sed01g1923 1042 Pfam jmjN domain 57 90 IPR003349 -
Sed01g1923 1042 SMART JmjN_1 55 96 IPR003349 -
Sed01g1923 1042 MobiDBLite consensus disorder prediction 637 661 - -
Sed01g1923 1042 MobiDBLite consensus disorder prediction 122 163 - -
Sed01g1923 1042 SUPERFAMILY Clavaminate synthase-like 235 456 - -
Sed01g1923 1042 PANTHER LYSINE-SPECIFIC DEMETHYLASE 51 742 - GO:0000785(PANTHER)|GO:0005634(PANTHER)|GO:0006338(PANTHER)|GO:0010468(PANTHER)|GO:0032452(PANTHER)|GO:0034647(PANTHER)
Sed01g1923 1042 SMART fyrn_3 817 861 IPR003888 GO:0005634(InterPro)
Sed01g1923 1042 Pfam C5HC2 zinc finger 520 572 IPR004198 -
Sed01g1923 1042 ProSiteProfiles JmjN domain profile. 56 97 IPR003349 -
Sed01g1923 1042 Gene3D - 811 947 - -
Sed01g1923 1042 SMART cupin_9 264 430 IPR003347 -
Sed01g1923 1042 MobiDBLite consensus disorder prediction 128 145 - -
Sed01g1923 1042 ProSiteProfiles JmjC domain profile. 264 430 IPR003347 -
Sed01g1923 1042 SMART fyrc_3 867 960 IPR003889 GO:0005634(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1923 Sed-Chr1:14305168 Sed08g2838 Sed-Chr8:39638368 0.00E+00 dispersed
Sed01g1923 Sed-Chr1:14305168 Sed01g1924 Sed-Chr1:14305168 0.00E+00 tandem
Sed01g1923 Sed-Chr1:14305168 Sed08g2837 Sed-Chr8:39638368 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37236 PF02373 JmjC 1.40E-44 CL0029 Sed TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1923 K11446 - csv:101214856 1621.68