Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1924 ATGGACCAGAATAAATTGGGAGCAGATTCTCATGCAAAAGGGGTTCATTCTTTCAAGAGCAGCCATAAAAGTTACCAGATTGTTGAGGGGTTAGGAAGTCCCCACCATTATAAGATTTCAGCGAGATGGGACCCGGATGAAGCATGCAGGCCTTTAATTGACGAAGCACCTGTATTTTATCCAACTGTGGAGGAATTTGAAGATACACTTGGGTACATAGCTAAAATTCGCCCTCAAGCAGAATCTTATGGTATATGCCGGATTGTCCCTCCGTCTTCTTGGAATCCACCATGTGTTCTCAAGGAGAAACTTATATGGGAAAATGCCAAATTCTCTACTCGGATTCAGCAAGTTGATTTGCTACAAAATAGGGAGCCCATGAAAAAGAAAAGTAGAGGTCGAAAACGCAAGCGAAGGAAGCACTCAAAAGCAGGGGCATCAGCTAGAAGCACCAATCTTGGTGTTGAAGCAAACACTACTTCTGAGTCTGATGAAAAATTTGGATTCAACTCTGGGTCAGACTATACACTCGAAGAATTCCAGGCATATGCAGACTGTTTTAAGGAATCATATTTTGGAACTAAGCAGGCTCAAGAGAATTTAAATACGGATCTCGAATCAAGCAAGATAAGGGACCCTTCTGTTGAGGACATTGAGGGTGAATACTGGCGGATTGTTGAGAAGTCTACAGATGAGGTTGAGGTTTACTATGGAGCTGATATAGAATCAGCAACATTCGTTAGTGGCTTTCCCAAGGCCTCATCCACAGTAACTGAAGGAAATTCAGATCCGTATGTAAAGTCGGGTTGGAATCTGAATAACTTCCCTCGCTTGCCCGGATCTGTTCTCTGTTTCGAGGAAAGTGATATATCTGGAGTTCTAGTTCCATGGCTCTATGTTGGAATGTGCTTTTCTTCATTTTGTTGGCATGTTGAAGACCATCATCTTTACTCTTTAAACTATATGCATTGGGGTGATCCAAAATTATGGTATGGAGTTCCGGGAAGCCACGCACCATCTTTAGAAGCTGCAATGAAAAAACATTTGCCTGATTTATTTGAAGAACAGCCAGATTTACTTCATGAATTGGTCACTCAATTATCTCCTTCAGTACTCAAAGCTGAAGGAGTACCTGTCTATCGAGTGGTCCAAAATTCTAGGGAGTTTGTTCTTACATTTCCAAGGGCATATCACGCAGGATTTAATTGTGGTTTCAACTGTGCTGAGGCTGTGAATGTGGCACCGGTCGACTGGTTGTTTCATGGCCAAAATGCTGTAGAACTTTATAGTGCACAACGACACAGAACATCGCTTTCACATGATAAGTTGTTATTTGGATCAGCTCGGGAAGCTGCTCAAGCCCTTTGGGAGCGATTAGTTCGAGAAAATGTAACTCCAAGTAATCGAAGTTGGCAAAGTGTGTGTGGAAAAGATGGAGATCTTACAAAAGCGATGAAGACAAGGGTTAAGATGGAGGAGGAAAGAATGAATTGCCTTCCAACTCTTATGAAGCAGCAAAAGATGGAAAGTGAGGCTGATTTCAAAAGTGAGAGAGAGTGCTATGCCTGCTTCTACGACTTATATCTTTCTTCAACCTCGTGCAAGTGTTCCCCTGATCGATTCTCATGCCTTAAGCATGCTGGTAACTTCTGCTCGTGTCCAGTAGAGGAAAGGTGCGTGCTCTTTCGCTATAGTATAGATGAGCTGCACGCACTTGTTGGAGCATTAGAAGGGGAAATAGATGCCATTAAAGAATGGGCCTCAAGATACTGTAAAATGGAAAAGGACAATGAGTCTGTAGCTAAGGTGGAGTTGCACAGCGGATTCATTGAAAAACCATATAGGTGCCCAGAAATAATAGATAAGTTAAAAAGAACGGATGCCCCATGCAGCTCATACAGTCATGCTTCTTCAGAAGTAGTGCAATCAGAGTCTCATCGAGGTTCGCGCAGCTTAAATACTTCCCACCTTAGTTCAGATAGCCAGAATGACATTGTGAATAGTGAAGTTATGGTAATAAAGAAAGAAGAGAAGGCAGGACATGAGTGCTGTTTTGATTTGAACCTTGAAATAATTTCTGAAGACAACGATAGCTGTGGTTGCCTCGAATCTGATAGCAAGATAGTAATTGATTTGGAGAAAACGTACACTTCGGTATATGAAGAAAAAGGTGCTTGTAAAGCAGCACATGAATCAGATTTAATGGAACTCGACACTGGTAATGTAAACACTTCACTGGCTATGGATTACTCAAGTTCAAAAGATGGTGTGAGAGTGTGCGGATCGAATGGTAATAAGTTGTTTGGAGTTGTTCTTTCGCAGTCGCAGCCAGTATATGCATCTAACAGTTCCTCAGAAGTAGAAACTCTAAAATACTCGGATAAAAGGATACCATCTTGGCCTAGTTCTCCTTGGAGTTTGGTTCCCTTTGTTGAACCTATAAATATTGGAACAATTATGTTCGGAAAGCTTTGGCACTGCAATAAGGCCATATTTCCAAAAGGATTTAGAAGCCGAGTGAAATTCTTTAGCGTGCTTAATCCAACGAATATTGTCAACTACACGTCCGAGGTTCTTGATGGCGGGCTTCTGGGACCTCTATTCAAGGTTACCTTGGATGAATCTCCCAGTGAGAACTTCACCAATGATGCCTCTGCAACCAAATGCTGGGACATGGTAGTACAGAGAATAAACCTAGAAATCGAAAGACAGAACCTTAGATTGGGAGAAACAGCTCCTTTGCAGCCTTTGGAGGAAGTCAATGGACTTGAAATGTTTGGATTTCTTTCACCTCAAGTCATTCAGGCTATCGAGGCCCTTGACCCTAAACATCGGTGTCTGGAGTACTGGAATCACCGGCATCACACCGTACCCGAAAATTCAGGTGACAACACTAACTGCAATAGTTCTGTTTTAAGATTAGATTTCTCTTCGTTGCAAACAAGTGCAACTGCTTTTGATATCAATAGGGAAGAGGATGAGAATGTCAATCCAACTATAGGAGTGGAAGGGCATCATCAAAATGAAGAGGCTCGGTCTGTTATAAAGGGACTTTTAAATAAAGCAAGCCCTCAAGAATTAAGAGTGCCGAGAAGCATATTCTGCACAGAACAACTGCAAAACTACTGA 3129 41.99 MDQNKLGADSHAKGVHSFKSSHKSYQIVEGLGSPHHYKISARWDPDEACRPLIDEAPVFYPTVEEFEDTLGYIAKIRPQAESYGICRIVPPSSWNPPCVLKEKLIWENAKFSTRIQQVDLLQNREPMKKKSRGRKRKRRKHSKAGASARSTNLGVEANTTSESDEKFGFNSGSDYTLEEFQAYADCFKESYFGTKQAQENLNTDLESSKIRDPSVEDIEGEYWRIVEKSTDEVEVYYGADIESATFVSGFPKASSTVTEGNSDPYVKSGWNLNNFPRLPGSVLCFEESDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYMHWGDPKLWYGVPGSHAPSLEAAMKKHLPDLFEEQPDLLHELVTQLSPSVLKAEGVPVYRVVQNSREFVLTFPRAYHAGFNCGFNCAEAVNVAPVDWLFHGQNAVELYSAQRHRTSLSHDKLLFGSAREAAQALWERLVRENVTPSNRSWQSVCGKDGDLTKAMKTRVKMEEERMNCLPTLMKQQKMESEADFKSERECYACFYDLYLSSTSCKCSPDRFSCLKHAGNFCSCPVEERCVLFRYSIDELHALVGALEGEIDAIKEWASRYCKMEKDNESVAKVELHSGFIEKPYRCPEIIDKLKRTDAPCSSYSHASSEVVQSESHRGSRSLNTSHLSSDSQNDIVNSEVMVIKKEEKAGHECCFDLNLEIISEDNDSCGCLESDSKIVIDLEKTYTSVYEEKGACKAAHESDLMELDTGNVNTSLAMDYSSSKDGVRVCGSNGNKLFGVVLSQSQPVYASNSSSEVETLKYSDKRIPSWPSSPWSLVPFVEPINIGTIMFGKLWHCNKAIFPKGFRSRVKFFSVLNPTNIVNYTSEVLDGGLLGPLFKVTLDESPSENFTNDASATKCWDMVVQRINLEIERQNLRLGETAPLQPLEEVNGLEMFGFLSPQVIQAIEALDPKHRCLEYWNHRHHTVPENSGDNTNCNSSVLRLDFSSLQTSATAFDINREEDENVNPTIGVEGHHQNEEARSVIKGLLNKASPQELRVPRSIFCTEQLQNY 1042
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14305168 14312420 - Sed0011729.2 Sed01g1924 701228

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1924 1042 Pfam F/Y rich C-terminus 865 955 IPR003889 GO:0005634(InterPro)
Sed01g1924 1042 Gene3D Cupin 41 414 - -
Sed01g1924 1042 Pfam JmjC domain, hydroxylase 297 413 IPR003347 -
Sed01g1924 1042 Pfam F/Y-rich N-terminus 814 861 IPR003888 GO:0005634(InterPro)
Sed01g1924 1042 ProSiteProfiles FYR domain FYRC motif profile. 863 954 IPR003889 GO:0005634(InterPro)
Sed01g1924 1042 ProSiteProfiles FYR domain FYRN motif profile. 803 861 IPR003888 GO:0005634(InterPro)
Sed01g1924 1042 MobiDBLite consensus disorder prediction 146 163 - -
Sed01g1924 1042 Pfam jmjN domain 57 90 IPR003349 -
Sed01g1924 1042 SMART JmjN_1 55 96 IPR003349 -
Sed01g1924 1042 MobiDBLite consensus disorder prediction 637 661 - -
Sed01g1924 1042 MobiDBLite consensus disorder prediction 122 163 - -
Sed01g1924 1042 SUPERFAMILY Clavaminate synthase-like 235 456 - -
Sed01g1924 1042 PANTHER LYSINE-SPECIFIC DEMETHYLASE 51 742 - GO:0000785(PANTHER)|GO:0005634(PANTHER)|GO:0006338(PANTHER)|GO:0010468(PANTHER)|GO:0032452(PANTHER)|GO:0034647(PANTHER)
Sed01g1924 1042 SMART fyrn_3 817 861 IPR003888 GO:0005634(InterPro)
Sed01g1924 1042 Pfam C5HC2 zinc finger 520 572 IPR004198 -
Sed01g1924 1042 ProSiteProfiles JmjN domain profile. 56 97 IPR003349 -
Sed01g1924 1042 Gene3D - 811 947 - -
Sed01g1924 1042 SMART cupin_9 264 430 IPR003347 -
Sed01g1924 1042 MobiDBLite consensus disorder prediction 128 145 - -
Sed01g1924 1042 ProSiteProfiles JmjC domain profile. 264 430 IPR003347 -
Sed01g1924 1042 SMART fyrc_3 867 960 IPR003889 GO:0005634(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1924 K11446 - - csv:101214856 1621.68
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1924 Sed-Chr1:14305168 Sed08g2837 Sed-Chr8:39638368 0.00E+00 dispersed
Sed01g1923 Sed-Chr1:14305168 Sed01g1924 Sed-Chr1:14305168 0.00E+00 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed03g2727 . 1 1227 JUMONJI Transcription Factor Family AT1G08620 53.3 0.0e+00 1235.3
Sed08g2837 . 29 971 JUMONJI Transcription Factor Family AT1G30810 50.1 6.3e-246 848.2
Sed08g2838 . 29 971 JUMONJI Transcription Factor Family AT1G30810 50.1 6.3e-246 848.2
Sed08g2839 . 29 971 JUMONJI Transcription Factor Family AT1G30810 50.1 6.3e-246 848.2
Sed08g2840 . 29 971 JUMONJI Transcription Factor Family AT1G30810 50.1 6.3e-246 848.2
Sed01g1923 . 27 973 JUMONJI Transcription Factor Family AT1G30810 50.1 4.2e-242 835.5
Sed01g1924 . 27 973 JUMONJI Transcription Factor Family AT1G30810 50.1 4.2e-242 835.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003199 1 6 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 6 5 1 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37237 PF02373 JmjC 1.40E-44 CL0029 Sed TR