Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1931 ATGATAAAGATGAAGGAAAGAAAGCAATTAGGGGCTGGGGGAGCAGCCCCATGCGCCGCATGCAAGCTACTCAGAAGAAGGTGCGCCCAAGAGTGTGTGTTTGCGCCATACTTCCCCGCCGACCAACCCCGCAAGTTCGCTAACGTTCATAAAGTCTTCGGCGCTAGTAACATCAACAAAATGCTTCAGGACTTGCCGGTTCACCAACGCGGGGATGCAGTGAGCAGTTTAGTGTACGAAGCAAACGCTCGGGTGCGCGACCCGGTCTACGGGTGTGTGGGAGCAATCTCGTCTCTGCAGCAGCAGATAGACACCCTCCAAACTCAGCTAGCTCTGGCTCAAGCCGAGGTGGTGCACCTAAGGGTGCGCCAAACAGCATCATTTTCAAACTATGGGCTAAGCCCAACAAGCCCAAGTAACAACAGTGGGTCGCCTTCATCCAGGCTAATGGGCTCACAGCCCAGGCCCATGTTTGAGATGGATATGGTTGTGGACCAGGCCATGGGAAACTCACTATGGTGA 522 54.21 MIKMKERKQLGAGGAAPCAACKLLRRRCAQECVFAPYFPADQPRKFANVHKVFGASNINKMLQDLPVHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDTLQTQLALAQAEVVHLRVRQTASFSNYGLSPTSPSNNSGSPSSRLMGSQPRPMFEMDMVVDQAMGNSLW 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14379149 14383332 + Sed0016325.1 Sed01g1931 701235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1931 173 ProSiteProfiles LOB domain profile. 16 117 IPR004883 -
Sed01g1931 173 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 16 136 - -
Sed01g1931 173 Pfam Lateral organ boundaries (LOB) domain 17 114 IPR004883 -
Sed01g1931 173 MobiDBLite consensus disorder prediction 131 151 - -
Sed01g1931 173 Coils Coil 96 123 - -
Sed01g1931 173 MobiDBLite consensus disorder prediction 131 154 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0750 Sed-Chr1:5548781 Sed01g1931 Sed-Chr1:14379149 1.50E-42 dispersed
Sed01g1931 Sed-Chr1:14379149 Sed05g1854 Sed-Chr5:31967644 4.50E-45 dispersed
Sed01g1931 Sed-Chr1:14379149 Sed05g3295 Sed-Chr5:42296810 1.40E-57 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37238 PF03195 LOB 1.10E-43 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1931 - - - 0.0