Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1946 ATGGCATCCACCACTTCATTTCTCAAGCTCTTCATTTTCTTCTTTCTCATTTGTAATTTTCTCACAAGTACTCAAGCCTCTACACAATCTAATGAATGTGTAACAGCCACCAATTCATGCACCAACAAAGACAAAGCCTTGCGCCTCAAAATCATTGCCATTTTCTCCATCCTCATTGCGAGTGTGATCGGCGTTTGCTCCCCGCTCTTCACCCGATCGATCCCGATGTTGCATCCCGATCGAAACATGTTCATCATCCTCAAAGCCTTTTCTGCAGGCATCATTCTCGCCACTGGTTTCATGCATGTCTTGCCTGATTCTTTCGCCATGCTTTGGTCGAATTGTTTGAAGGAGAATCCATGGCATAAGTTTCCCTTTTCGGGTTTTGTCGCCATGATTTCGGCCATCATCACCCTCATGATCGATTCAATGGCTACAAGTTTTTATACTAAGAAACATACTGAAGTTATGCCCGAGAATTCCCAAGGAGAAGATCAAGAGTCGCCTGCGGTCAATCGAAACGTTAAAGAAATTAACACAGCTTCTCAATTGTCGCGTTATCGTATCATTGCCATGGTTTTGGAATTTGGAATTGTTGTTCATTCTGTTGTGATTGGGCTTTCACTTGGAGCAACAAATGATACATGCACAATCAAAGGCCTAGTGGCTGCTCTTTGTTTCCATCAAATGTTTGAAGGGATGGGTCTTGGTGGCTGTATTCTTCAGGCAGAATACAAGCAATGGATGAAGAGGGCAATAATGGTATTCTTTTTTTCAGTGACAACCCCATTTGGGATAGTCCTAGGGATAGGGTTGTCAAGGACATACAAAGAAAACAGCCCAAATGCCCTAATCACAGTGGGATTGCTAAATGCTTCTTCAGCTGGGCTTCTAATTTACATGGCTTTGGTTGACCTTCTTTCTGCTGACTTTATGGGCCCAAAGTTACAATCCAGCATCAAACTTCAACTCAAATCTTGCATTGCTGTTCTTTTGGGAGCTGGTGGCATGTCCTTAATGGCAAAGTGGGCTTGA 1035 43.19 MASTTSFLKLFIFFFLICNFLTSTQASTQSNECVTATNSCTNKDKALRLKIIAIFSILIASVIGVCSPLFTRSIPMLHPDRNMFIILKAFSAGIILATGFMHVLPDSFAMLWSNCLKENPWHKFPFSGFVAMISAIITLMIDSMATSFYTKKHTEVMPENSQGEDQESPAVNRNVKEINTASQLSRYRIIAMVLEFGIVVHSVVIGLSLGATNDTCTIKGLVAALCFHQMFEGMGLGGCILQAEYKQWMKRAIMVFFFSVTTPFGIVLGIGLSRTYKENSPNALITVGLLNASSAGLLIYMALVDLLSADFMGPKLQSSIKLQLKSCIAVLLGAGGMSLMAKWA 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14472986 14477335 - Sed0025925.1 Sed01g1946 701250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1946 344 NCBIfam ZIP zinc/iron transport family 36 344 IPR004698 GO:0005385(InterPro)|GO:0016020(InterPro)|GO:0071577(InterPro)
Sed01g1946 344 PANTHER ZINC/IRON TRANSPORTER 43 343 - GO:0005385(PANTHER)|GO:0005886(PANTHER)|GO:0016020(PANTHER)|GO:0071577(PANTHER)
Sed01g1946 344 Pfam ZIP Zinc transporter 48 341 IPR003689 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1946 Sed-Chr1:14472986 Sed06g1122 Sed-Chr6:31962100 1.70E-80 dispersed
Sed03g0317 Sed-Chr3:1928973 Sed01g1946 Sed-Chr1:14472986 4.80E-18 transposed
Sed01g1946 Sed-Chr1:14472986 Sed08g1963 Sed-Chr8:34085745 2.50E-156 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1946 K14709 - csv:101221552 545.043