Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1950 ATGGCCGCAAAAGATTCAGAGCCAATCTTGGACGTGCAGTCGGTGGTGGAAGCAGTAGTTACAGACCAAGACGCCGACGTTCCAAGTTACCAAGTCGAAAGCCTCTGTATGCGCTGCGGACAAAACGGGATAACAAGGTTTTTGTTGACTCTAATTCCGCACTTCAGAAAGATCTTATTATCGGCATTTGAATGTTCACATTGTGGTGAGAGGAACAATGAAGTCCAGTTTGCTGGTGAGATCCAGCCACGAGGCTGTTGCTACTCTTTGGAGGTTCCTGCTGGCGACCAGAAGATGCTCAATCGACAAGTGGTGAAATCTGAATCTGCCATTATTAAGATCCCTGAATTGGACTTCGAAATTCCAGAAGAGGCTCAACGTGGAATTCTATCTACAGTGGAAGGTATATTGTTACGGGCTGTGGAGGGATTGGAAGCCCTTCAAGAGGAACGAAGGAAAGTAGATCCTCAAACTGCCGATGCAATAGATCAGTTTCTCCTGAAACTGAAAGCCTGTGCCATAGGAGACTCATCTTTCTCCCTCATCTTGGATGATCCAGCTGGAAACAGCTTCGTTGAGAACCCATTTGCACCAACTAAGGATCCCTCATTAAGTATCAAGTTTTACGAGCGGACTCCAGAACAACAAGCATCATTAGGTTACTATGTCGAATCATCACAACCAGAAGCTGAGGTTGGACCATCATCAAGTGGAGTTGATGCTTCTAATCAAGTTAGAGGAGAGGCACATGGATCTGTAGGAGCAGCAGCTGGTCATCGTGCAATAGCTCAGAGTAACAGTGCTGAGATCGCTGACGCCTTGTTTCGTTACACTGCACCAGAAGAAGTGATGACTTTTCCATCAACATGTGGAACTTGTGCAGCAAGTTGTGAGACTCGAATGTTTGTAACCAAAATTCCCTACTTCCAGGAAGTGATTGTGATGGCATCTACTTGTGATGCATGTGGCTACCGTAATTCTGAGTTGAAGCCGGGTGGGCGAATTCCTGAAAAAGGAAAGATAATTAATCTTTGCGTGAAGGATGTCAGAGATCTAAGTCGAGATGTGATAAAGTCAGATACTGCAAGTGTAAGAGTCCCAGATCTTGACTTGGAGCTTACTAGTGGTACTCTTGGGGGAATTGTTACAACTGTTGAAGGCTTAATCACAAAAATAAGTGAAAGTCTAGAGAGAGTACATGGGTTTACTTTTGGCGACAGTCTTGAGGAAAATACGAGAAACAAATGGCTGGACTTTCAAACAAGACTAAACAAGCTCTTGAGTTTGGAAGCGCCTTGGACTCTAATCCTTGACGATGCATTAGCAAACTCGTTTATTGCACCGGTGACTGATGATATGAAAGATGACCATCAGCTTACAAATGAGGAGTACGAGCGATCGTGGGAACAGAACGAGGAACTCGGTTTGAACGACATGGACACCTCATCTGCTGATGCTGCTTATGAGTGA 1470 44.9 MAAKDSEPILDVQSVVEAVVTDQDADVPSYQVESLCMRCGQNGITRFLLTLIPHFRKILLSAFECSHCGERNNEVQFAGEIQPRGCCYSLEVPAGDQKMLNRQVVKSESAIIKIPELDFEIPEEAQRGILSTVEGILLRAVEGLEALQEERRKVDPQTADAIDQFLLKLKACAIGDSSFSLILDDPAGNSFVENPFAPTKDPSLSIKFYERTPEQQASLGYYVESSQPEAEVGPSSSGVDASNQVRGEAHGSVGAAAGHRAIAQSNSAEIADALFRYTAPEEVMTFPSTCGTCAASCETRMFVTKIPYFQEVIVMASTCDACGYRNSELKPGGRIPEKGKIINLCVKDVRDLSRDVIKSDTASVRVPDLDLELTSGTLGGIVTTVEGLITKISESLERVHGFTFGDSLEENTRNKWLDFQTRLNKLLSLEAPWTLILDDALANSFIAPVTDDMKDDHQLTNEEYERSWEQNEELGLNDMDTSSADAAYE 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14529856 14541552 + Sed0017297.1 Sed01g1950 701254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1950 489 SMART zpr1 34 194 IPR004457 GO:0008270(InterPro)
Sed01g1950 489 SMART zpr1 288 448 IPR004457 GO:0008270(InterPro)
Sed01g1950 489 FunFam Zinc finger protein ZPR1 24 79 - -
Sed01g1950 489 PANTHER ZINC FINGER PROTEIN ZPR1 11 486 IPR040141 GO:0005634(PANTHER)|GO:0005737(PANTHER)
Sed01g1950 489 Pfam ZPR1 jelly-roll domain 351 476 - -
Sed01g1950 489 Pfam ZPR1 jelly-roll domain 99 221 - -
Sed01g1950 489 Pfam ZPR1 zinc-finger domain 282 337 IPR004457 GO:0008270(InterPro)
Sed01g1950 489 Pfam ZPR1 zinc-finger domain 31 83 IPR004457 GO:0008270(InterPro)
Sed01g1950 489 FunFam Zinc finger protein ZPR1 279 333 - -
Sed01g1950 489 MobiDBLite consensus disorder prediction 462 489 - -
Sed01g1950 489 FunFam Zinc finger protein ZPR1 334 476 - -
Sed01g1950 489 NCBIfam ZPR1 zinc finger domain 36 219 IPR004457 GO:0008270(InterPro)
Sed01g1950 489 NCBIfam ZPR1 zinc finger domain 289 480 IPR004457 GO:0008270(InterPro)
Sed01g1950 489 FunFam zinc finger protein ZPR1 80 221 - -
Sed01g1950 489 Gene3D ZPR1, zinc finger domain 26 79 IPR042452 -
Sed01g1950 489 Gene3D ZPR1, zinc finger domain 278 333 IPR042452 -
Sed01g1950 489 Gene3D ZPR1, A/B domain 334 476 IPR042451 -
Sed01g1950 489 Gene3D ZPR1, A/B domain 80 221 IPR042451 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1950 K06874 - csv:101208000 874.774