Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1998 ATGGCTTTGTGGGGTTTTCTCCTTTTGGGTTTCTTTTTTGTTTTTGGTTATTCTCCGCTTGTTCGTGCTCTTACGGATGCCTCTGATGTTCAAGCTTTGCAAGTTATATATACCTCATTGAATAGTCCTCCTCAGCTGACTGGTTGGATTGGTAGTGGCGGGGATCCATGTGCAGAGTCATGGAAAGGGGTTACTTGTGAAGGGTCTGCAGTTGTTTCCATTGAGGTTTCTGGGTTGGGGCTGAATGGTACCATGGGTTATGCCCTCTCAAGTTTTTTGTCATTGAAGAATCTTGATATGAGTGACAACAACATTCATGAAACGATTCCCTACCAGTTACCGCCGAACCTCACCAGCCTAAATATGGCAAAAAACAACTTAACTGGTAATCTTCCTTATTCAATCTCCACCATGGCTTCTCTTAATTATCTGAATATGAGCCATAATTTGCTAGCTCAGGCGATTGGAGACGTTTTCACCAATATTACTACCCTGGGGACCTTGGACCTTTCTTTCAACAACTTTACTGGGAGCCTTCCTAATTCCTTGAGCACATTATCCAACATGTCTTCCCTCTTTTTGCAGAACAACCAATTGACTGGTTCTCTCAATAATCTTATCACTTTGCCTCTTACCACCCTGAATGTAGCAAATAATAATTTCAGTGGATGGATACCTCAAGAACTGAAGTCGGTCGGAAATTTCATATACACTGGAAATTCATTTAATGATAGTCCTGCACCTCCTCCACCGCCTTTTACTCCTCCACCTCCTGGTAGATCTCGTAACAGCCCCAAACATCCTGGGTCTGGCAGTGGTGGCGGCGGCACCCACCCTGCTTCAAGTTCTGATAGCAGCTCATCCCACTCGAACAAAGGCTTGTCCATTTTGGCTATAGTGGGGATAGTTTCTGGTGCTATAATTTGTGTCCTCATCTTGTTAGTTGCTTTTGCCGTATTCATCCAGAAGAGAAAGCGGAAGAACATTGGTTTAAGAGCTTCCAGTGGAAGGCTGTCTATTGGCACTAGTGTGAGCGCCATGGTTCAAGAGCATCGCGTAAAAAGCGTTGCTGCTGTTGCAGACATTAAACCGCTTCCTGCAGAGAAGATGAATCCTGAGAGATTACAAGCAAAAAATGGATCAATGAAAAGGATTAAGGCTCCTATTACTGCCACTTCTTACACTGTTGCTTCTCTTCAAAGTGCAACAAATAGCTTTAGTCAAGAATGCATAGTTGGCGAAGGTTCTCTTGGCCGTGTTTACAAAGCAGATTTTCCGAATGGGAAGATAATGGCGATTAAGAAAATCGACAATGCAGCATTGTCGCTAAAGGAAGAAGACAATTTTCTTGAAGCCGTGTCAAACATGTCGAGATTGAGGCACACAAACATTGTCACATTAAATGGTTATTGCGCAGAACACGGTCAGCGTCTTCTAGTTTACGAGTTTATTAGCAATGGTAGTTTACACGACATGCTCCATTTCGCTGAAGAAAGTAGTAAGACACTGACTTGGAATGCGCGTGTCCGGGTAGCACTCGGAACTGCTAGAGCTTTAGAATACTTGCATGAGGTATGCTTGCCATCAGTTGTACATAGAAACTTGAAGACTGCAAACATATTACTTGATGAAGAGCTCAACCCCCATTTGTCAGATTGCGGTTTAGCCGCTTTAACACCCAACACAGAGCGGCAGGTTTCTACTCAAATGGTTGGTTCCTTTGGTTATAGTGCCCCGGAATTTGCCTTGTCAGGAATATACACGGTCAAAAGTGACGTGTACAGCTTCGGGGTGGTGATGTTGGAGCTCTTGACTGGCCGAAAGCCGCTTGACAGTTCCAGGGTGAGATCAGAGCAGTCACTTGTGAGATGGGCTACTCCACAACTCCATGATATCGATGCCTTAGCGAAAATGGTAGATCCTACTTTGAACGGAATGTACCCTGCAAAATCTCTATCGCGCTTTGCCGATATAATCGCCCTCTGTGTTCAGCCTGAGCCCGAATTTCGACCTCCAATGTCCGAAGTAGTACAAGCATTGGTGCGTTTAGTGCAAAGAGCCAGTGTGGTCAAGAGGCATTCAAGCGACGAGTCGGGTTTCTCTTACAAAACACCCGACCACGATGCAGTTGAGTTGCCATTTTGA 2145 44.71 MALWGFLLLGFFFVFGYSPLVRALTDASDVQALQVIYTSLNSPPQLTGWIGSGGDPCAESWKGVTCEGSAVVSIEVSGLGLNGTMGYALSSFLSLKNLDMSDNNIHETIPYQLPPNLTSLNMAKNNLTGNLPYSISTMASLNYLNMSHNLLAQAIGDVFTNITTLGTLDLSFNNFTGSLPNSLSTLSNMSSLFLQNNQLTGSLNNLITLPLTTLNVANNNFSGWIPQELKSVGNFIYTGNSFNDSPAPPPPPFTPPPPGRSRNSPKHPGSGSGGGGTHPASSSDSSSSHSNKGLSILAIVGIVSGAIICVLILLVAFAVFIQKRKRKNIGLRASSGRLSIGTSVSAMVQEHRVKSVAAVADIKPLPAEKMNPERLQAKNGSMKRIKAPITATSYTVASLQSATNSFSQECIVGEGSLGRVYKADFPNGKIMAIKKIDNAALSLKEEDNFLEAVSNMSRLRHTNIVTLNGYCAEHGQRLLVYEFISNGSLHDMLHFAEESSKTLTWNARVRVALGTARALEYLHEVCLPSVVHRNLKTANILLDEELNPHLSDCGLAALTPNTERQVSTQMVGSFGYSAPEFALSGIYTVKSDVYSFGVVMLELLTGRKPLDSSRVRSEQSLVRWATPQLHDIDALAKMVDPTLNGMYPAKSLSRFADIIALCVQPEPEFRPPMSEVVQALVRLVQRASVVKRHSSDESGFSYKTPDHDAVELPF 714
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14944669 14950760 + Sed0012913.1 Sed01g1998 701302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1998 714 SUPERFAMILY L domain-like 25 231 - -
Sed01g1998 714 Gene3D Ribonuclease Inhibitor 25 253 IPR032675 -
Sed01g1998 714 Pfam Protein kinase domain 409 678 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1998 714 ProSiteProfiles Protein kinase domain profile. 406 683 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1998 714 MobiDBLite consensus disorder prediction 244 263 - -
Sed01g1998 714 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 26 253 - -
Sed01g1998 714 Gene3D Transferase(Phosphotransferase) domain 1 484 707 - -
Sed01g1998 714 MobiDBLite consensus disorder prediction 265 288 - -
Sed01g1998 714 MobiDBLite consensus disorder prediction 240 288 - -
Sed01g1998 714 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 484 694 - -
Sed01g1998 714 Pfam Leucine Rich Repeat 211 230 IPR001611 GO:0005515(InterPro)
Sed01g1998 714 Pfam Leucine Rich Repeat 116 137 IPR001611 GO:0005515(InterPro)
Sed01g1998 714 Pfam Leucine Rich Repeat 94 113 IPR001611 GO:0005515(InterPro)
Sed01g1998 714 Pfam Leucine Rich Repeat 165 186 IPR001611 GO:0005515(InterPro)
Sed01g1998 714 Gene3D Phosphorylase Kinase; domain 1 367 483 - -
Sed01g1998 714 PANTHER LEUCINE RICH REPEAT KINASE 2 211 682 IPR051420 -
Sed01g1998 714 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Sed01g1998 714 SUPERFAMILY Protein kinase-like (PK-like) 387 680 IPR011009 -
Sed01g1998 714 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 371 483 - -
Sed01g1998 714 CDD STKc_IRAK 412 683 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1998 Sed-Chr1:14944669 Sed01g2000 Sed-Chr1:14944669 2.10E-266 dispersed
Sed01g1998 Sed-Chr1:14944669 Sed01g1999 Sed-Chr1:14944669 4.40E-280 tandem
Sed03g1214 Sed-Chr3:7771222 Sed01g1998 Sed-Chr1:14944669 3.70E-130 transposed
Sed04g2358 Sed-Chr4:37053158 Sed01g1998 Sed-Chr1:14944669 1.70E-125 transposed
Sed11g1725 Sed-Chr11:32358988 Sed01g1998 Sed-Chr1:14944669 9.00E-134 transposed
Sed01g1998 Sed-Chr1:14944669 Sed08g1942 Sed-Chr8:33820667 2.00E-304 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78635 PF00069 Pkinase 2.10E-44 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1998 - - - 0.0