Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g1999 ATGTTTTTCAGTGATATGAGTGACAACAACATTCATGAAACGATTCCCTACCAGTTACCGCCGAACCTCACCAGCCTAAATATGGCAAAAAACAACTTAACTGGTAATCTTCCTTATTCAATCTCCACCATGGCTTCTCTTAATTATCTGAATATGAGCCATAATTTGCTAGCTCAGGCGATTGGAGACGTTTTCACCAATATTACTACCCTGGGGACCTTGGACCTTTCTTTCAACAACTTTACTGGGAGCCTTCCTAATTCCTTGAGCACATTATCCAACATGTCTTCCCTCTTTTTGCAGAACAACCAATTGACTGGTTCTCTCAATAATCTTATCACTTTGCCTCTTACCACCCTGAATGTAGCAAATAATAATTTCAGTGGATGGATACCTCAAGAACTGAAGTCGGTCGGAAATTTCATATACACTGGAAATTCATTTAATGATAGTCCTGCACCTCCTCCACCGCCTTTTACTCCTCCACCTCCTGGTAGATCTCGTAACAGCCCCAAACATCCTGGGTCTGGCAGTGGTGGCGGCGGCACCCACCCTGCTTCAAGTTCTGATAGCAGCTCATCCCACTCGAACAAAGGCTTGTCCATTTTGGCTATAGTGGGGATAGTTTCTGGTGCTATAATTTGTGTCCTCATCTTGTTAGTTGCTTTTGCCGTATTCATCCAGAAGAGAAAGCGGAAGAACATTGGTTTAAGAGCTTCCAGTGGAAGGCTGTCTATTGGCACTAGTGTGAGCGCCATGGTTCAAGAGCATCGCGTAAAAAGCGTTGCTGCTGTTGCAGACATTAAACCGCTTCCTGCAGAGAAGATGAATCCTGAGAGATTACAAGCAAAAAATGGATCAATGAAAAGGATTAAGGCTCCTATTACTGCCACTTCTTACACTGTTGCTTCTCTTCAAAGTGCAACAAATAGCTTTAGTCAAGAATGCATAGTTGGCGAAGGTTCTCTTGGCCGTGTTTACAAAGCAGATTTTCCGAATGGGAAGATAATGGCGATTAAGAAAATCGACAATGCAGCATTGTCGCTAAAGGAAGAAGACAATTTTCTTGAAGCCGTGTCAAACATGTCGAGATTGAGGCACACAAACATTGTCACATTAAATGGTTATTGCGCAGAACACGGTCAGCGTCTTCTAGTTTACGAGTTTATTAGCAATGGTAGTTTACACGACATGCTCCATTTCGCTGAAGAAAGTAGTAAGACACTGACTTGGAATGCGCGTGTCCGGGTAGCACTCGGAACTGCTAGAGCTTTAGAATACTTGCATGAGGTATGCTTGCCATCAGTTGTACATAGAAACTTGAAGACTGCAAACATATTACTTGATGAAGAGCTCAACCCCCATTTGTCAGATTGCGGTTTAGCCGCTTTAACACCCAACACAGAGCGGCAGGTTTCTACTCAAATGGTTGGTTCCTTTGGTTATAGTGCCCCGGAATTTGCCTTGTCAGGAATATACACGGTCAAAAGTGACGTGTACAGCTTCGGGGTGGTGATGTTGGAGCTCTTGACTGGCCGAAAGCCGCTTGACAGTTCCAGGGTGAGATCAGAGCAGTCACTTGTGAGATGGGCTACTCCACAACTCCATGATATCGATGCCTTAGCGAAAATGGTAGATCCTACTTTGAACGGAATGTACCCTGCAAAATCTCTATCGCGCTTTGCCGATATAATCGCCCTCTGTGTTCAGCCTGAGCCCGAATTTCGACCTCCAATGTCCGAAGTAGTACAAGCATTGGTGCGTTTAGTGCAAAGAGCCAGTGTGGTCAAGAGGCATTCAAGCGACGAGTCGGGTTTCTCTTACAAAACACCCGACCACGATGCAGTTGAGTTGCCATTTTGA 1863 44.61 MFFSDMSDNNIHETIPYQLPPNLTSLNMAKNNLTGNLPYSISTMASLNYLNMSHNLLAQAIGDVFTNITTLGTLDLSFNNFTGSLPNSLSTLSNMSSLFLQNNQLTGSLNNLITLPLTTLNVANNNFSGWIPQELKSVGNFIYTGNSFNDSPAPPPPPFTPPPPGRSRNSPKHPGSGSGGGGTHPASSSDSSSSHSNKGLSILAIVGIVSGAIICVLILLVAFAVFIQKRKRKNIGLRASSGRLSIGTSVSAMVQEHRVKSVAAVADIKPLPAEKMNPERLQAKNGSMKRIKAPITATSYTVASLQSATNSFSQECIVGEGSLGRVYKADFPNGKIMAIKKIDNAALSLKEEDNFLEAVSNMSRLRHTNIVTLNGYCAEHGQRLLVYEFISNGSLHDMLHFAEESSKTLTWNARVRVALGTARALEYLHEVCLPSVVHRNLKTANILLDEELNPHLSDCGLAALTPNTERQVSTQMVGSFGYSAPEFALSGIYTVKSDVYSFGVVMLELLTGRKPLDSSRVRSEQSLVRWATPQLHDIDALAKMVDPTLNGMYPAKSLSRFADIIALCVQPEPEFRPPMSEVVQALVRLVQRASVVKRHSSDESGFSYKTPDHDAVELPF 620
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14944669 14950760 + Sed0012913.2 Sed01g1999 701303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g1999 620 SUPERFAMILY L domain-like 5 141 - -
Sed01g1999 620 MobiDBLite consensus disorder prediction 171 194 - -
Sed01g1999 620 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 390 600 - -
Sed01g1999 620 MobiDBLite consensus disorder prediction 146 194 - -
Sed01g1999 620 Gene3D Phosphorylase Kinase; domain 1 273 389 - -
Sed01g1999 620 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 2 159 - -
Sed01g1999 620 Gene3D Transferase(Phosphotransferase) domain 1 390 613 - -
Sed01g1999 620 CDD STKc_IRAK 318 589 - -
Sed01g1999 620 PANTHER LEUCINE RICH REPEAT KINASE 2 5 158 IPR051420 -
Sed01g1999 620 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 277 389 - -
Sed01g1999 620 SUPERFAMILY Protein kinase-like (PK-like) 293 586 IPR011009 -
Sed01g1999 620 Gene3D Ribonuclease Inhibitor 3 159 IPR032675 -
Sed01g1999 620 MobiDBLite consensus disorder prediction 150 169 - -
Sed01g1999 620 ProSiteProfiles Protein kinase domain profile. 312 589 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1999 620 Pfam Protein kinase domain 315 584 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g1999 620 Pfam Leucine Rich Repeat 71 92 IPR001611 GO:0005515(InterPro)
Sed01g1999 620 Pfam Leucine Rich Repeat 22 43 IPR001611 GO:0005515(InterPro)
Sed01g1999 620 Pfam Leucine Rich Repeat 117 136 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1999 Sed-Chr1:14944669 Sed08g1942 Sed-Chr8:33820667 2.20E-259 dispersed
Sed01g1998 Sed-Chr1:14944669 Sed01g1999 Sed-Chr1:14944669 4.40E-280 tandem
Sed01g1999 Sed-Chr1:14944669 Sed01g2000 Sed-Chr1:14944669 3.00E-272 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78636 PF00069 Pkinase 1.50E-44 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g1999 - - - 0.0