Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2000 ATGTGCAGAAATATGGCAAAAAACAACTTAACTGGTAATCTTCCTTATTCAATCTCCACCATGGCTTCTCTTAATTATCTGAATATGAGCCATAATTTGCTAGCTCAGGCGATTGGAGACGTTTTCACCAATATTACTACCCTGGGGACCTTGGACCTTTCTTTCAACAACTTTACTGGGAGCCTTCCTAATTCCTTGAGCACATTATCCAACATGTCTTCCCTCTTTTTGCAGAACAACCAATTGACTGGTTCTCTCAATAATCTTATCACTTTGCCTCTTACCACCCTGAATGTAGCAAATAATAATTTCAGTGGATGGATACCTCAAGAACTGAAGTCGGTCGGAAATTTCATATACACTGGAAATTCATTTAATGATAGTCCTGCACCTCCTCCACCGCCTTTTACTCCTCCACCTCCTGGTAGATCTCGTAACAGCCCCAAACATCCTGGGTCTGGCAGTGGTGGCGGCGGCACCCACCCTGCTTCAAGTTCTGATAGCAGCTCATCCCACTCGAACAAAGGCTTGTCCATTTTGGCTATAGTGGGGATAGTTTCTGGTGCTATAATTTGTGTCCTCATCTTGTTAGTTGCTTTTGCCGTATTCATCCAGAAGAGAAAGCGGAAGAACATTGGTTTAAGAGCTTCCAGTGGAAGGCTGTCTATTGGCACTAGTGTGAGCGCCATGGTTCAAGAGCATCGCGTAAAAAGCGTTGCTGCTGTTGCAGACATTAAACCGCTTCCTGCAGAGAAGATGAATCCTGAGAGATTACAAGCAAAAAATGGATCAATGAAAAGGATTAAGGCTCCTATTACTGCCACTTCTTACACTGTTGCTTCTCTTCAAAGTGCAACAAATAGCTTTAGTCAAGAATGCATAGTTGGCGAAGGTTCTCTTGGCCGTGTTTACAAAGCAGATTTTCCGAATGGGAAGATAATGGCGATTAAGAAAATCGACAATGCAGCATTGTCGCTAAAGGAAGAAGACAATTTTCTTGAAGCCGTGTCAAACATGTCGAGATTGAGGCACACAAACATTGTCACATTAAATGGTTATTGCGCAGAACACGGTCAGCGTCTTCTAGTTTACGAGTTTATTAGCAATGGTAGTTTACACGACATGCTCCATTTCGCTGAAGAAAGTAGTAAGACACTGACTTGGAATGCGCGTGTCCGGGTAGCACTCGGAACTGCTAGAGCTTTAGAATACTTGCATGAGGTATGCTTGCCATCAGTTGTACATAGAAACTTGAAGACTGCAAACATATTACTTGATGAAGAGCTCAACCCCCATTTGTCAGATTGCGGTTTAGCCGCTTTAACACCCAACACAGAGCGGCAGGTTTCTACTCAAATGGTTGGTTCCTTTGGTTATAGTGCCCCGGAATTTGCCTTGTCAGGAATATACACGGTCAAAAGTGACGTGTACAGCTTCGGGGTGGTGATGTTGGAGCTCTTGACTGGCCGAAAGCCGCTTGACAGTTCCAGGGTGAGATCAGAGCAGTCACTTGTGAGATGGGCTACTCCACAACTCCATGATATCGATGCCTTAGCGAAAATGGTAGATCCTACTTTGAACGGAATGTACCCTGCAAAATCTCTATCGCGCTTTGCCGATATAATCGCCCTCTGTGTTCAGCCTGAGCCCGAATTTCGACCTCCAATGTCCGAAGTAGTACAAGCATTGGTGCGTTTAGTGCAAAGAGCCAGTGTGGTCAAGAGGCATTCAAGCGACGAGTCGGGTTTCTCTTACAAAACACCCGACCACGATGCAGTTGAGTTGCCATTTTGA 1794 44.65 MCRNMAKNNLTGNLPYSISTMASLNYLNMSHNLLAQAIGDVFTNITTLGTLDLSFNNFTGSLPNSLSTLSNMSSLFLQNNQLTGSLNNLITLPLTTLNVANNNFSGWIPQELKSVGNFIYTGNSFNDSPAPPPPPFTPPPPGRSRNSPKHPGSGSGGGGTHPASSSDSSSSHSNKGLSILAIVGIVSGAIICVLILLVAFAVFIQKRKRKNIGLRASSGRLSIGTSVSAMVQEHRVKSVAAVADIKPLPAEKMNPERLQAKNGSMKRIKAPITATSYTVASLQSATNSFSQECIVGEGSLGRVYKADFPNGKIMAIKKIDNAALSLKEEDNFLEAVSNMSRLRHTNIVTLNGYCAEHGQRLLVYEFISNGSLHDMLHFAEESSKTLTWNARVRVALGTARALEYLHEVCLPSVVHRNLKTANILLDEELNPHLSDCGLAALTPNTERQVSTQMVGSFGYSAPEFALSGIYTVKSDVYSFGVVMLELLTGRKPLDSSRVRSEQSLVRWATPQLHDIDALAKMVDPTLNGMYPAKSLSRFADIIALCVQPEPEFRPPMSEVVQALVRLVQRASVVKRHSSDESGFSYKTPDHDAVELPF 597
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14944669 14950760 + Sed0012913.3 Sed01g2000 701304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2000 597 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 254 366 - -
Sed01g2000 597 SUPERFAMILY L domain-like 5 128 - -
Sed01g2000 597 Gene3D Ribonuclease Inhibitor 3 136 IPR032675 -
Sed01g2000 597 ProSiteProfiles Protein kinase domain profile. 289 566 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g2000 597 SUPERFAMILY Protein kinase-like (PK-like) 270 563 IPR011009 -
Sed01g2000 597 CDD STKc_IRAK 295 566 - -
Sed01g2000 597 Pfam Protein kinase domain 292 561 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g2000 597 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 367 577 - -
Sed01g2000 597 Pfam Leucine Rich Repeat 94 113 IPR001611 GO:0005515(InterPro)
Sed01g2000 597 Pfam Leucine Rich Repeat 48 69 IPR001611 GO:0005515(InterPro)
Sed01g2000 597 PANTHER LEUCINE RICH REPEAT KINASE 2 4 135 IPR051420 -
Sed01g2000 597 Gene3D Transferase(Phosphotransferase) domain 1 367 590 - -
Sed01g2000 597 MobiDBLite consensus disorder prediction 127 146 - -
Sed01g2000 597 Gene3D Phosphorylase Kinase; domain 1 250 366 - -
Sed01g2000 597 MobiDBLite consensus disorder prediction 148 171 - -
Sed01g2000 597 MobiDBLite consensus disorder prediction 123 171 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1998 Sed-Chr1:14944669 Sed01g2000 Sed-Chr1:14944669 2.10E-266 dispersed
Sed01g2000 Sed-Chr1:14944669 Sed08g1942 Sed-Chr8:33820667 2.40E-247 dispersed
Sed01g1999 Sed-Chr1:14944669 Sed01g2000 Sed-Chr1:14944669 3.00E-272 tandem
Sed01g2000 Sed-Chr1:14944669 Sed01g2001 Sed-Chr1:14944669 2.80E-259 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78637 PF00069 Pkinase 1.40E-44 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2000 - - - 0.0