Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g2000 | ATGTGCAGAAATATGGCAAAAAACAACTTAACTGGTAATCTTCCTTATTCAATCTCCACCATGGCTTCTCTTAATTATCTGAATATGAGCCATAATTTGCTAGCTCAGGCGATTGGAGACGTTTTCACCAATATTACTACCCTGGGGACCTTGGACCTTTCTTTCAACAACTTTACTGGGAGCCTTCCTAATTCCTTGAGCACATTATCCAACATGTCTTCCCTCTTTTTGCAGAACAACCAATTGACTGGTTCTCTCAATAATCTTATCACTTTGCCTCTTACCACCCTGAATGTAGCAAATAATAATTTCAGTGGATGGATACCTCAAGAACTGAAGTCGGTCGGAAATTTCATATACACTGGAAATTCATTTAATGATAGTCCTGCACCTCCTCCACCGCCTTTTACTCCTCCACCTCCTGGTAGATCTCGTAACAGCCCCAAACATCCTGGGTCTGGCAGTGGTGGCGGCGGCACCCACCCTGCTTCAAGTTCTGATAGCAGCTCATCCCACTCGAACAAAGGCTTGTCCATTTTGGCTATAGTGGGGATAGTTTCTGGTGCTATAATTTGTGTCCTCATCTTGTTAGTTGCTTTTGCCGTATTCATCCAGAAGAGAAAGCGGAAGAACATTGGTTTAAGAGCTTCCAGTGGAAGGCTGTCTATTGGCACTAGTGTGAGCGCCATGGTTCAAGAGCATCGCGTAAAAAGCGTTGCTGCTGTTGCAGACATTAAACCGCTTCCTGCAGAGAAGATGAATCCTGAGAGATTACAAGCAAAAAATGGATCAATGAAAAGGATTAAGGCTCCTATTACTGCCACTTCTTACACTGTTGCTTCTCTTCAAAGTGCAACAAATAGCTTTAGTCAAGAATGCATAGTTGGCGAAGGTTCTCTTGGCCGTGTTTACAAAGCAGATTTTCCGAATGGGAAGATAATGGCGATTAAGAAAATCGACAATGCAGCATTGTCGCTAAAGGAAGAAGACAATTTTCTTGAAGCCGTGTCAAACATGTCGAGATTGAGGCACACAAACATTGTCACATTAAATGGTTATTGCGCAGAACACGGTCAGCGTCTTCTAGTTTACGAGTTTATTAGCAATGGTAGTTTACACGACATGCTCCATTTCGCTGAAGAAAGTAGTAAGACACTGACTTGGAATGCGCGTGTCCGGGTAGCACTCGGAACTGCTAGAGCTTTAGAATACTTGCATGAGGTATGCTTGCCATCAGTTGTACATAGAAACTTGAAGACTGCAAACATATTACTTGATGAAGAGCTCAACCCCCATTTGTCAGATTGCGGTTTAGCCGCTTTAACACCCAACACAGAGCGGCAGGTTTCTACTCAAATGGTTGGTTCCTTTGGTTATAGTGCCCCGGAATTTGCCTTGTCAGGAATATACACGGTCAAAAGTGACGTGTACAGCTTCGGGGTGGTGATGTTGGAGCTCTTGACTGGCCGAAAGCCGCTTGACAGTTCCAGGGTGAGATCAGAGCAGTCACTTGTGAGATGGGCTACTCCACAACTCCATGATATCGATGCCTTAGCGAAAATGGTAGATCCTACTTTGAACGGAATGTACCCTGCAAAATCTCTATCGCGCTTTGCCGATATAATCGCCCTCTGTGTTCAGCCTGAGCCCGAATTTCGACCTCCAATGTCCGAAGTAGTACAAGCATTGGTGCGTTTAGTGCAAAGAGCCAGTGTGGTCAAGAGGCATTCAAGCGACGAGTCGGGTTTCTCTTACAAAACACCCGACCACGATGCAGTTGAGTTGCCATTTTGA | 1794 | 44.65 | MCRNMAKNNLTGNLPYSISTMASLNYLNMSHNLLAQAIGDVFTNITTLGTLDLSFNNFTGSLPNSLSTLSNMSSLFLQNNQLTGSLNNLITLPLTTLNVANNNFSGWIPQELKSVGNFIYTGNSFNDSPAPPPPPFTPPPPGRSRNSPKHPGSGSGGGGTHPASSSDSSSSHSNKGLSILAIVGIVSGAIICVLILLVAFAVFIQKRKRKNIGLRASSGRLSIGTSVSAMVQEHRVKSVAAVADIKPLPAEKMNPERLQAKNGSMKRIKAPITATSYTVASLQSATNSFSQECIVGEGSLGRVYKADFPNGKIMAIKKIDNAALSLKEEDNFLEAVSNMSRLRHTNIVTLNGYCAEHGQRLLVYEFISNGSLHDMLHFAEESSKTLTWNARVRVALGTARALEYLHEVCLPSVVHRNLKTANILLDEELNPHLSDCGLAALTPNTERQVSTQMVGSFGYSAPEFALSGIYTVKSDVYSFGVVMLELLTGRKPLDSSRVRSEQSLVRWATPQLHDIDALAKMVDPTLNGMYPAKSLSRFADIIALCVQPEPEFRPPMSEVVQALVRLVQRASVVKRHSSDESGFSYKTPDHDAVELPF | 597 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 14944669 | 14950760 | + | Sed0012913.3 | Sed01g2000 | 701304 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g2000 | 597 | FunFam | Protein STRUBBELIG-RECEPTOR FAMILY 8 | 254 | 366 | - | - | |
Sed01g2000 | 597 | SUPERFAMILY | L domain-like | 5 | 128 | - | - | |
Sed01g2000 | 597 | Gene3D | Ribonuclease Inhibitor | 3 | 136 | IPR032675 | - | |
Sed01g2000 | 597 | ProSiteProfiles | Protein kinase domain profile. | 289 | 566 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed01g2000 | 597 | SUPERFAMILY | Protein kinase-like (PK-like) | 270 | 563 | IPR011009 | - | |
Sed01g2000 | 597 | CDD | STKc_IRAK | 295 | 566 | - | - | |
Sed01g2000 | 597 | Pfam | Protein kinase domain | 292 | 561 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed01g2000 | 597 | FunFam | protein STRUBBELIG-RECEPTOR FAMILY 8 | 367 | 577 | - | - | |
Sed01g2000 | 597 | Pfam | Leucine Rich Repeat | 94 | 113 | IPR001611 | GO:0005515(InterPro) | |
Sed01g2000 | 597 | Pfam | Leucine Rich Repeat | 48 | 69 | IPR001611 | GO:0005515(InterPro) | |
Sed01g2000 | 597 | PANTHER | LEUCINE RICH REPEAT KINASE 2 | 4 | 135 | IPR051420 | - | |
Sed01g2000 | 597 | Gene3D | Transferase(Phosphotransferase) domain 1 | 367 | 590 | - | - | |
Sed01g2000 | 597 | MobiDBLite | consensus disorder prediction | 127 | 146 | - | - | |
Sed01g2000 | 597 | Gene3D | Phosphorylase Kinase; domain 1 | 250 | 366 | - | - | |
Sed01g2000 | 597 | MobiDBLite | consensus disorder prediction | 148 | 171 | - | - | |
Sed01g2000 | 597 | MobiDBLite | consensus disorder prediction | 123 | 171 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g1998 | Sed-Chr1:14944669 | Sed01g2000 | Sed-Chr1:14944669 | 2.10E-266 | dispersed | |
Sed01g2000 | Sed-Chr1:14944669 | Sed08g1942 | Sed-Chr8:33820667 | 2.40E-247 | dispersed | |
Sed01g1999 | Sed-Chr1:14944669 | Sed01g2000 | Sed-Chr1:14944669 | 3.00E-272 | tandem | |
Sed01g2000 | Sed-Chr1:14944669 | Sed01g2001 | Sed-Chr1:14944669 | 2.80E-259 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
78637 | PF00069 | Pkinase | 1.40E-44 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g2000 | - | - | - | 0.0 |