Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2001 ATGAGCCATAATTTGCTAGCTCAGGCGATTGGAGACGTTTTCACCAATATTACTACCCTGGGGACCTTGGACCTTTCTTTCAACAACTTTACTGGGAGCCTTCCTAATTCCTTGAGCACATTATCCAACATGTCTTCCCTCTTTTTGCAGAACAACCAATTGACTGGTTCTCTCAATAATCTTATCACTTTGCCTCTTACCACCCTGAATGTAGCAAATAATAATTTCAGTGGATGGATACCTCAAGAACTGAAGTCGGTCGGAAATTTCATATACACTGGAAATTCATTTAATGATAGTCCTGCACCTCCTCCACCGCCTTTTACTCCTCCACCTCCTGGTAGATCTCGTAACAGCCCCAAACATCCTGGGTCTGGCAGTGGTGGCGGCGGCACCCACCCTGCTTCAAGTTCTGATAGCAGCTCATCCCACTCGAACAAAGGCTTGTCCATTTTGGCTATAGTGGGGATAGTTTCTGGTGCTATAATTTGTGTCCTCATCTTGTTAGTTGCTTTTGCCGTATTCATCCAGAAGAGAAAGCGGAAGAACATTGGTTTAAGAGCTTCCAGTGGAAGGCTGTCTATTGGCACTAGTGTGAGCGCCATGGTTCAAGAGCATCGCGTAAAAAGCGTTGCTGCTGTTGCAGACATTAAACCGCTTCCTGCAGAGAAGATGAATCCTGAGAGATTACAAGCAAAAAATGGATCAATGAAAAGGATTAAGGCTCCTATTACTGCCACTTCTTACACTGTTGCTTCTCTTCAAAGTGCAACAAATAGCTTTAGTCAAGAATGCATAGTTGGCGAAGGTTCTCTTGGCCGTGTTTACAAAGCAGATTTTCCGAATGGGAAGATAATGGCGATTAAGAAAATCGACAATGCAGCATTGTCGCTAAAGGAAGAAGACAATTTTCTTGAAGCCGTGTCAAACATGTCGAGATTGAGGCACACAAACATTGTCACATTAAATGGTTATTGCGCAGAACACGGTCAGCGTCTTCTAGTTTACGAGTTTATTAGCAATGGTAGTTTACACGACATGCTCCATTTCGCTGAAGAAAGTAGTAAGACACTGACTTGGAATGCGCGTGTCCGGGTAGCACTCGGAACTGCTAGAGCTTTAGAATACTTGCATGAGGTATGCTTGCCATCAGTTGTACATAGAAACTTGAAGACTGCAAACATATTACTTGATGAAGAGCTCAACCCCCATTTGTCAGATTGCGGTTTAGCCGCTTTAACACCCAACACAGAGCGGCAGGTTTCTACTCAAATGGTTGGTTCCTTTGGTTATAGTGCCCCGGAATTTGCCTTGTCAGGAATATACACGGTCAAAAGTGACGTGTACAGCTTCGGGGTGGTGATGTTGGAGCTCTTGACTGGCCGAAAGCCGCTTGACAGTTCCAGGGTGAGATCAGAGCAGTCACTTGTGAGATGGGCTACTCCACAACTCCATGATATCGATGCCTTAGCGAAAATGGTAGATCCTACTTTGAACGGAATGTACCCTGCAAAATCTCTATCGCGCTTTGCCGATATAATCGCCCTCTGTGTTCAGCCTGAGCCCGAATTTCGACCTCCAATGTCCGAAGTAGTACAAGCATTGGTGCGTTTAGTGCAAAGAGCCAGTGTGGTCAAGAGGCATTCAAGCGACGAGTCGGGTTTCTCTTACAAAACACCCGACCACGATGCAGTTGAGTTGCCATTTTGA 1710 45.2 MSHNLLAQAIGDVFTNITTLGTLDLSFNNFTGSLPNSLSTLSNMSSLFLQNNQLTGSLNNLITLPLTTLNVANNNFSGWIPQELKSVGNFIYTGNSFNDSPAPPPPPFTPPPPGRSRNSPKHPGSGSGGGGTHPASSSDSSSSHSNKGLSILAIVGIVSGAIICVLILLVAFAVFIQKRKRKNIGLRASSGRLSIGTSVSAMVQEHRVKSVAAVADIKPLPAEKMNPERLQAKNGSMKRIKAPITATSYTVASLQSATNSFSQECIVGEGSLGRVYKADFPNGKIMAIKKIDNAALSLKEEDNFLEAVSNMSRLRHTNIVTLNGYCAEHGQRLLVYEFISNGSLHDMLHFAEESSKTLTWNARVRVALGTARALEYLHEVCLPSVVHRNLKTANILLDEELNPHLSDCGLAALTPNTERQVSTQMVGSFGYSAPEFALSGIYTVKSDVYSFGVVMLELLTGRKPLDSSRVRSEQSLVRWATPQLHDIDALAKMVDPTLNGMYPAKSLSRFADIIALCVQPEPEFRPPMSEVVQALVRLVQRASVVKRHSSDESGFSYKTPDHDAVELPF 569
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14944669 14950760 + Sed0012913.4 Sed01g2001 701305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2001 569 MobiDBLite consensus disorder prediction 99 118 - -
Sed01g2001 569 MobiDBLite consensus disorder prediction 120 143 - -
Sed01g2001 569 SUPERFAMILY L domain-like 2 100 - -
Sed01g2001 569 Pfam Protein kinase domain 264 533 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g2001 569 Gene3D Phosphorylase Kinase; domain 1 222 338 - -
Sed01g2001 569 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 226 338 - -
Sed01g2001 569 Gene3D Ribonuclease Inhibitor 1 108 IPR032675 -
Sed01g2001 569 Pfam Leucine Rich Repeat 20 41 IPR001611 GO:0005515(InterPro)
Sed01g2001 569 Pfam Leucine Rich Repeat 66 85 IPR001611 GO:0005515(InterPro)
Sed01g2001 569 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 339 549 - -
Sed01g2001 569 CDD STKc_IRAK 267 538 - -
Sed01g2001 569 PANTHER LEUCINE RICH REPEAT KINASE 2 2 537 IPR051420 -
Sed01g2001 569 MobiDBLite consensus disorder prediction 95 143 - -
Sed01g2001 569 Gene3D Transferase(Phosphotransferase) domain 1 339 562 - -
Sed01g2001 569 ProSiteProfiles Protein kinase domain profile. 261 538 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g2001 569 SUPERFAMILY Protein kinase-like (PK-like) 242 535 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2001 Sed-Chr1:14944669 Sed08g1942 Sed-Chr8:33820667 7.20E-233 dispersed
Sed01g2000 Sed-Chr1:14944669 Sed01g2001 Sed-Chr1:14944669 2.80E-259 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78638 PF00069 Pkinase 1.20E-44 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2001 - - - 0.0