Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2002 ATGGAAGCTTCACATGACCATCTTCTTGAAAACACATTAAAAATTTACACAAAGCTCCACAGCTTCAAGCACATAATGAATGGCTTTGCTGTGCACACAACCCCATCAGAGGCCAAAAGGCTAAGACAAGTTCAAGGAGTGAAACTAGTGGAGAAAGATAGGGGAGTGAAAAAAATGACAACTTATAGCCCTAAGTTTCTAGGGGTGCCCTCCAAATCAAGGGTATGCAAGAAAAATATGAAGGAAGATCAGAAATTAAATGTTGATGGGGAAGGGATTGTGATTGGGTTTGTGGACTCTGGGATTGACCCAACACATCCAAGTTTTGGTTTTTATGGTAATTTTGATGATAAAGTTTCAAAAGGTGAGTTTTTGAATTGTGGGGTTTGTGAAAAAGGCCCACTTTTTGGTTCAAGTTCTTGCAATGGGAAGATTGTGAGTGCAAGGTTTTTCTCAGCTGGGGCTCAGGCTGTTGCTAAGCTTAATTCTTCTCTTGACTTTCTCTCCCCATTTGATGCTGAAGGCCATGGAAGCCACGTGGCATCCATAGCTGCTGGGAATGCAGGAGTTCCTGTGATTGTGAATGGTTTCTTCTATGGATTGGCCAGTGGCATGGCGCCACGTGCACGAATTGCTGTTTATAAAGCAGTTTATCCAACGGTGGCTACTCTAACCGATGTGGTTTCAGCGATAGATCAAGCAGTTGCTGATGGAGTTGATATATTGGCATTATCAGTTGGACCAAATGAACCACCAGAAGAAGGATTTACGTTCCTAAGTATGTATGACATTGCCATATTATCTGTTACACGAGCTGGTATCCTTGTGGTTCAGGCAGCCGGAAACAACGGCCCGGCCCCTGCAACCGTCGTCTCCTACAGCCCTTGGGCGGTCGGCGTTGCAGCGACAGGCACCGACAGAGCTTATCCGACCTCACTTCTCCTTGGCAATGGCCAAAAAGTTGGAGGAGTAGGACTCTCTGGACCCACTTTGGGGTATCAGTTTTTCCTACACAAGCTGGTATTAGCCAAGGATGCAAAGAAGCAAAATTATGAGACAGATCTCAGTGAAGAATGCCAATATCCTGAAGCTTTTGACCCAAATATTGTCCAAAACAGCATAGTCATCTGCTCTTTCTCTCAAGGATTCCTCAATGGAACCTCCTCCCTCACAGCCATCATTCACACTGCAACAACCCTCGGTTTCGTGGGCTTTGCTCTCATTGCAAATCCAAACTATGGTGATTTCATTGCTGAGCCCATCCCTTTTAGACTCCCCGGCATTCTCGTCCCGAGCGCATCGGATTCTCAGGTGATATTGAAGTACTATGAAGCAAATACATGCAAGGATGAAAGGGGAATGGTTACAAAATTTAAAGGGAAAGCAGGCATAGGAGAAGGAAGAGTTGCTTCATTTGGAGGCCAAGCTCCAACAGTTAGCAGATTTTCATCAAGAGGACCAGATTATATGAACATAAATAGAACTGTGGCTGATGTGCTAAAGCCTGATATTCTTGCACCAGGCCACCAAATTTGGGCTGCTTGGAGCCCCCTCAGCGCCTCAGAGCCACTTTTAAAGGGATACCAATTTGCACTGCTGTCTGGAACAAGTATGGCAGCACCCCATATTGTGGGAATAGCTGCACTTATCAAGCAAAAGAATCCTTCTTGGACTCCTTCCATGATAGCTTCTGCAATGTCCACAACTGCTACTAAGTATGATTTGAATGGAGAACTTATTCATGCTGAGGGATTCAACCTTCATAGTGTATATCCTTCTACTCCCTTTGATTTTGGCGCTGGCCTCGTCTCGCCGACCAACGCTTTGGACCCCGGACTCGTCTTCCCAGCAGAACATGAAGACTATATAAACTTCTTATGCTCATTACCTGGGGTTGATCCTGCTGTAATCAAAAGCAGCACTGGAGGAGAGTGCAACAATGGCTCTGTCCCAAAGCCACACCCTGCAAATCTGAACCTTCCTTCAGTCACAATATCATCACTGGTTGGGCACCAATTGCTGCAAAGAAAAGTGAAGAATGTAGGACCCAAAGTGGAGACTTATGTGTGGTCAGTGATCCCACCAAATGGGACAACAGTCAACATCAAACCACCATGGTTCACCATTGCACCACAAGGGGTTCAAATCTTGGAGATACAAATCAATGTCACACACAAAATGGATCACTTTACCTTTGGGGAGATCATTTTGACTGGAAGTTTACACCATATTGCAAGGATCCCTTTGTCTGTTTTGGCTTTTTCTGTATTATAA 2274 44.9 MEASHDHLLENTLKIYTKLHSFKHIMNGFAVHTTPSEAKRLRQVQGVKLVEKDRGVKKMTTYSPKFLGVPSKSRVCKKNMKEDQKLNVDGEGIVIGFVDSGIDPTHPSFGFYGNFDDKVSKGEFLNCGVCEKGPLFGSSSCNGKIVSARFFSAGAQAVAKLNSSLDFLSPFDAEGHGSHVASIAAGNAGVPVIVNGFFYGLASGMAPRARIAVYKAVYPTVATLTDVVSAIDQAVADGVDILALSVGPNEPPEEGFTFLSMYDIAILSVTRAGILVVQAAGNNGPAPATVVSYSPWAVGVAATGTDRAYPTSLLLGNGQKVGGVGLSGPTLGYQFFLHKLVLAKDAKKQNYETDLSEECQYPEAFDPNIVQNSIVICSFSQGFLNGTSSLTAIIHTATTLGFVGFALIANPNYGDFIAEPIPFRLPGILVPSASDSQVILKYYEANTCKDERGMVTKFKGKAGIGEGRVASFGGQAPTVSRFSSRGPDYMNINRTVADVLKPDILAPGHQIWAAWSPLSASEPLLKGYQFALLSGTSMAAPHIVGIAALIKQKNPSWTPSMIASAMSTTATKYDLNGELIHAEGFNLHSVYPSTPFDFGAGLVSPTNALDPGLVFPAEHEDYINFLCSLPGVDPAVIKSSTGGECNNGSVPKPHPANLNLPSVTISSLVGHQLLQRKVKNVGPKVETYVWSVIPPNGTTVNIKPPWFTIAPQGVQILEIQINVTHKMDHFTFGEIILTGSLHHIARIPLSVLAFSVL 757
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14952009 14959521 - Sed0018980.1 Sed01g2002 701306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2002 757 ProSitePatterns Serine proteases, subtilase family, serine active site. 535 545 IPR023828 -
Sed01g2002 757 Gene3D - 306 472 - -
Sed01g2002 757 Pfam Fibronectin type-III domain 657 751 IPR041469 -
Sed01g2002 757 ProSitePatterns Serine proteases, subtilase family, aspartic acid active site. 95 106 IPR023827 -
Sed01g2002 757 Gene3D Peptidase S8/S53 domain 92 622 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Sed01g2002 757 PRINTS Subtilisin serine protease family (S8) signature 172 185 IPR015500 -
Sed01g2002 757 PRINTS Subtilisin serine protease family (S8) signature 534 550 IPR015500 -
Sed01g2002 757 PRINTS Subtilisin serine protease family (S8) signature 90 109 IPR015500 -
Sed01g2002 757 SUPERFAMILY Subtilisin-like 59 613 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Sed01g2002 757 CDD PA_subtilisin_like 312 447 - -
Sed01g2002 757 ProSitePatterns Serine proteases, subtilase family, histidine active site. 176 186 IPR022398 -
Sed01g2002 757 ProSiteProfiles Serine proteases, subtilase domain profile. 66 609 - -
Sed01g2002 757 CDD Peptidases_S8_3 56 571 IPR034197 -
Sed01g2002 757 Pfam Subtilase family 90 575 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Sed01g2002 757 Gene3D - 626 753 - -
Sed01g2002 757 Pfam Peptidase inhibitor I9 13 57 IPR010259 -
Sed01g2002 757 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 17 709 IPR045051 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2002 Sed-Chr1:14952009 Sed03g2805 Sed-Chr3:44867837 2.00E-161 dispersed
Sed01g2002 Sed-Chr1:14952009 Sed03g2804 Sed-Chr3:44867837 2.00E-161 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2002 - - - 0.0