Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g2002 | ATGGAAGCTTCACATGACCATCTTCTTGAAAACACATTAAAAATTTACACAAAGCTCCACAGCTTCAAGCACATAATGAATGGCTTTGCTGTGCACACAACCCCATCAGAGGCCAAAAGGCTAAGACAAGTTCAAGGAGTGAAACTAGTGGAGAAAGATAGGGGAGTGAAAAAAATGACAACTTATAGCCCTAAGTTTCTAGGGGTGCCCTCCAAATCAAGGGTATGCAAGAAAAATATGAAGGAAGATCAGAAATTAAATGTTGATGGGGAAGGGATTGTGATTGGGTTTGTGGACTCTGGGATTGACCCAACACATCCAAGTTTTGGTTTTTATGGTAATTTTGATGATAAAGTTTCAAAAGGTGAGTTTTTGAATTGTGGGGTTTGTGAAAAAGGCCCACTTTTTGGTTCAAGTTCTTGCAATGGGAAGATTGTGAGTGCAAGGTTTTTCTCAGCTGGGGCTCAGGCTGTTGCTAAGCTTAATTCTTCTCTTGACTTTCTCTCCCCATTTGATGCTGAAGGCCATGGAAGCCACGTGGCATCCATAGCTGCTGGGAATGCAGGAGTTCCTGTGATTGTGAATGGTTTCTTCTATGGATTGGCCAGTGGCATGGCGCCACGTGCACGAATTGCTGTTTATAAAGCAGTTTATCCAACGGTGGCTACTCTAACCGATGTGGTTTCAGCGATAGATCAAGCAGTTGCTGATGGAGTTGATATATTGGCATTATCAGTTGGACCAAATGAACCACCAGAAGAAGGATTTACGTTCCTAAGTATGTATGACATTGCCATATTATCTGTTACACGAGCTGGTATCCTTGTGGTTCAGGCAGCCGGAAACAACGGCCCGGCCCCTGCAACCGTCGTCTCCTACAGCCCTTGGGCGGTCGGCGTTGCAGCGACAGGCACCGACAGAGCTTATCCGACCTCACTTCTCCTTGGCAATGGCCAAAAAGTTGGAGGAGTAGGACTCTCTGGACCCACTTTGGGGTATCAGTTTTTCCTACACAAGCTGGTATTAGCCAAGGATGCAAAGAAGCAAAATTATGAGACAGATCTCAGTGAAGAATGCCAATATCCTGAAGCTTTTGACCCAAATATTGTCCAAAACAGCATAGTCATCTGCTCTTTCTCTCAAGGATTCCTCAATGGAACCTCCTCCCTCACAGCCATCATTCACACTGCAACAACCCTCGGTTTCGTGGGCTTTGCTCTCATTGCAAATCCAAACTATGGTGATTTCATTGCTGAGCCCATCCCTTTTAGACTCCCCGGCATTCTCGTCCCGAGCGCATCGGATTCTCAGGTGATATTGAAGTACTATGAAGCAAATACATGCAAGGATGAAAGGGGAATGGTTACAAAATTTAAAGGGAAAGCAGGCATAGGAGAAGGAAGAGTTGCTTCATTTGGAGGCCAAGCTCCAACAGTTAGCAGATTTTCATCAAGAGGACCAGATTATATGAACATAAATAGAACTGTGGCTGATGTGCTAAAGCCTGATATTCTTGCACCAGGCCACCAAATTTGGGCTGCTTGGAGCCCCCTCAGCGCCTCAGAGCCACTTTTAAAGGGATACCAATTTGCACTGCTGTCTGGAACAAGTATGGCAGCACCCCATATTGTGGGAATAGCTGCACTTATCAAGCAAAAGAATCCTTCTTGGACTCCTTCCATGATAGCTTCTGCAATGTCCACAACTGCTACTAAGTATGATTTGAATGGAGAACTTATTCATGCTGAGGGATTCAACCTTCATAGTGTATATCCTTCTACTCCCTTTGATTTTGGCGCTGGCCTCGTCTCGCCGACCAACGCTTTGGACCCCGGACTCGTCTTCCCAGCAGAACATGAAGACTATATAAACTTCTTATGCTCATTACCTGGGGTTGATCCTGCTGTAATCAAAAGCAGCACTGGAGGAGAGTGCAACAATGGCTCTGTCCCAAAGCCACACCCTGCAAATCTGAACCTTCCTTCAGTCACAATATCATCACTGGTTGGGCACCAATTGCTGCAAAGAAAAGTGAAGAATGTAGGACCCAAAGTGGAGACTTATGTGTGGTCAGTGATCCCACCAAATGGGACAACAGTCAACATCAAACCACCATGGTTCACCATTGCACCACAAGGGGTTCAAATCTTGGAGATACAAATCAATGTCACACACAAAATGGATCACTTTACCTTTGGGGAGATCATTTTGACTGGAAGTTTACACCATATTGCAAGGATCCCTTTGTCTGTTTTGGCTTTTTCTGTATTATAA | 2274 | 44.9 | MEASHDHLLENTLKIYTKLHSFKHIMNGFAVHTTPSEAKRLRQVQGVKLVEKDRGVKKMTTYSPKFLGVPSKSRVCKKNMKEDQKLNVDGEGIVIGFVDSGIDPTHPSFGFYGNFDDKVSKGEFLNCGVCEKGPLFGSSSCNGKIVSARFFSAGAQAVAKLNSSLDFLSPFDAEGHGSHVASIAAGNAGVPVIVNGFFYGLASGMAPRARIAVYKAVYPTVATLTDVVSAIDQAVADGVDILALSVGPNEPPEEGFTFLSMYDIAILSVTRAGILVVQAAGNNGPAPATVVSYSPWAVGVAATGTDRAYPTSLLLGNGQKVGGVGLSGPTLGYQFFLHKLVLAKDAKKQNYETDLSEECQYPEAFDPNIVQNSIVICSFSQGFLNGTSSLTAIIHTATTLGFVGFALIANPNYGDFIAEPIPFRLPGILVPSASDSQVILKYYEANTCKDERGMVTKFKGKAGIGEGRVASFGGQAPTVSRFSSRGPDYMNINRTVADVLKPDILAPGHQIWAAWSPLSASEPLLKGYQFALLSGTSMAAPHIVGIAALIKQKNPSWTPSMIASAMSTTATKYDLNGELIHAEGFNLHSVYPSTPFDFGAGLVSPTNALDPGLVFPAEHEDYINFLCSLPGVDPAVIKSSTGGECNNGSVPKPHPANLNLPSVTISSLVGHQLLQRKVKNVGPKVETYVWSVIPPNGTTVNIKPPWFTIAPQGVQILEIQINVTHKMDHFTFGEIILTGSLHHIARIPLSVLAFSVL | 757 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 14952009 | 14959521 | - | Sed0018980.1 | Sed01g2002 | 701306 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g2002 | 757 | ProSitePatterns | Serine proteases, subtilase family, serine active site. | 535 | 545 | IPR023828 | - | |
Sed01g2002 | 757 | Gene3D | - | 306 | 472 | - | - | |
Sed01g2002 | 757 | Pfam | Fibronectin type-III domain | 657 | 751 | IPR041469 | - | |
Sed01g2002 | 757 | ProSitePatterns | Serine proteases, subtilase family, aspartic acid active site. | 95 | 106 | IPR023827 | - | |
Sed01g2002 | 757 | Gene3D | Peptidase S8/S53 domain | 92 | 622 | IPR036852 | GO:0004252(InterPro)|GO:0006508(InterPro) | |
Sed01g2002 | 757 | PRINTS | Subtilisin serine protease family (S8) signature | 172 | 185 | IPR015500 | - | |
Sed01g2002 | 757 | PRINTS | Subtilisin serine protease family (S8) signature | 534 | 550 | IPR015500 | - | |
Sed01g2002 | 757 | PRINTS | Subtilisin serine protease family (S8) signature | 90 | 109 | IPR015500 | - | |
Sed01g2002 | 757 | SUPERFAMILY | Subtilisin-like | 59 | 613 | IPR036852 | GO:0004252(InterPro)|GO:0006508(InterPro) | |
Sed01g2002 | 757 | CDD | PA_subtilisin_like | 312 | 447 | - | - | |
Sed01g2002 | 757 | ProSitePatterns | Serine proteases, subtilase family, histidine active site. | 176 | 186 | IPR022398 | - | |
Sed01g2002 | 757 | ProSiteProfiles | Serine proteases, subtilase domain profile. | 66 | 609 | - | - | |
Sed01g2002 | 757 | CDD | Peptidases_S8_3 | 56 | 571 | IPR034197 | - | |
Sed01g2002 | 757 | Pfam | Subtilase family | 90 | 575 | IPR000209 | GO:0006508(InterPro)|GO:0008236(InterPro) | |
Sed01g2002 | 757 | Gene3D | - | 626 | 753 | - | - | |
Sed01g2002 | 757 | Pfam | Peptidase inhibitor I9 | 13 | 57 | IPR010259 | - | |
Sed01g2002 | 757 | PANTHER | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN | 17 | 709 | IPR045051 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g2002 | Sed-Chr1:14952009 | Sed03g2805 | Sed-Chr3:44867837 | 2.00E-161 | dispersed | |
Sed01g2002 | Sed-Chr1:14952009 | Sed03g2804 | Sed-Chr3:44867837 | 2.00E-161 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g2002 | - | - | - | 0.0 |