Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2039 ATGGCCGGCCGGAAGTTATGGGATTCATCCAAAACCCTCTTCTCGCCGGCGGCCAATTCGCCGCCGTGTTCCGTCGCTGATCCCACCATTCCAATGGATTCTAATTGGAACCACCATTTTCATGGCTATGGTGCACAAAGAGTTGACACCACTTTGGTGGTGGATTCAATCGAGGGGCCAAAATTAAATTATGAACTCCAAGAGACTAGTGGATCATCACATGAGCAACAAAATAATCCTTCCAATTTTGTGTTTTTCATTGACCAACCTTATTATAATCAAAGCCCTTTCAATCTTAACGATAATGTTATTACAACTACATGTCAAGAATTATCAATGGCTTTCCCTTTTGATACCATTTCAAATGAGCAATCAAGACAATTTCTTGCCGACAATAGGATCATTAATTGCTATTCTTCAACAAATTCAGATGAGTTTTTGTCTTGTCGCTCAATGTTCGAAACCCATTGGCTACAACCTCCGCCCTTGAATTTCACAACAAAGATGATTAATTGTGGTGAAGTTGTTCAAGATTTGAGTGGGGTTGTGAGGGAAAACAAAAGTAAAGAAATTGCAATAATCAAAAGGCCAAGAAGTGACGTGTCATCCAAATTACCCACTTTTAAGGTTCGAAAAGGGAAGCTTGCCGACAAGATCGCAATGCTCCAACAACTTGTTTCTCCTTTTGGAAAGACGGATACTGCATCAGTTCTACATGAAGCAATTGAGTACATCAAGTTTCTTCATGATCAAATTCGTGTTTTAAGTACTCCTTATATGGAAGTTGAAAAAAACGATCAAGAGCAGCAACAGATTAAGGAAGAATTGAAAGACACAAAGGAGGAAAAGAAACAAGATCTAAGAAGTGGAGGACTTTGTCTGGTGGGAATTTCTAGGACAATTGCATTAACAAATGGAAATACATTTGATTTCTGGTCGCCAACATTTGGAGGAACATTTAGGTAA 966 39.13 MAGRKLWDSSKTLFSPAANSPPCSVADPTIPMDSNWNHHFHGYGAQRVDTTLVVDSIEGPKLNYELQETSGSSHEQQNNPSNFVFFIDQPYYNQSPFNLNDNVITTTCQELSMAFPFDTISNEQSRQFLADNRIINCYSSTNSDEFLSCRSMFETHWLQPPPLNFTTKMINCGEVVQDLSGVVRENKSKEIAIIKRPRSDVSSKLPTFKVRKGKLADKIAMLQQLVSPFGKTDTASVLHEAIEYIKFLHDQIRVLSTPYMEVEKNDQEQQQIKEELKDTKEEKKQDLRSGGLCLVGISRTIALTNGNTFDFWSPTFGGTFR 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15260900 15263192 + Sed0019261.1 Sed01g2039 701343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2039 321 Coils Coil 259 289 - -
Sed01g2039 321 CDD bHLH_AtbHLH_like 204 256 IPR045239 -
Sed01g2039 321 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 209 262 IPR036638 GO:0046983(InterPro)
Sed01g2039 321 Gene3D - 207 285 IPR036638 GO:0046983(InterPro)
Sed01g2039 321 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 71 298 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Sed01g2039 321 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 199 248 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2039 Sed-Chr1:15260900 Sed10g0349 Sed-Chr10:2141688 4.50E-38 dispersed
Sed01g3060 Sed-Chr1:36486018 Sed01g2039 Sed-Chr1:15260900 9.20E-125 transposed
Sed01g2039 Sed-Chr1:15260900 Sed13g1153 Sed-Chr13:13532768 3.80E-37 wgd
Sed01g2039 Sed-Chr1:15260900 Sed14g1385 Sed-Chr14:22611683 2.40E-36 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2039 - - - 0.0