Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g2039 | ATGGCCGGCCGGAAGTTATGGGATTCATCCAAAACCCTCTTCTCGCCGGCGGCCAATTCGCCGCCGTGTTCCGTCGCTGATCCCACCATTCCAATGGATTCTAATTGGAACCACCATTTTCATGGCTATGGTGCACAAAGAGTTGACACCACTTTGGTGGTGGATTCAATCGAGGGGCCAAAATTAAATTATGAACTCCAAGAGACTAGTGGATCATCACATGAGCAACAAAATAATCCTTCCAATTTTGTGTTTTTCATTGACCAACCTTATTATAATCAAAGCCCTTTCAATCTTAACGATAATGTTATTACAACTACATGTCAAGAATTATCAATGGCTTTCCCTTTTGATACCATTTCAAATGAGCAATCAAGACAATTTCTTGCCGACAATAGGATCATTAATTGCTATTCTTCAACAAATTCAGATGAGTTTTTGTCTTGTCGCTCAATGTTCGAAACCCATTGGCTACAACCTCCGCCCTTGAATTTCACAACAAAGATGATTAATTGTGGTGAAGTTGTTCAAGATTTGAGTGGGGTTGTGAGGGAAAACAAAAGTAAAGAAATTGCAATAATCAAAAGGCCAAGAAGTGACGTGTCATCCAAATTACCCACTTTTAAGGTTCGAAAAGGGAAGCTTGCCGACAAGATCGCAATGCTCCAACAACTTGTTTCTCCTTTTGGAAAGACGGATACTGCATCAGTTCTACATGAAGCAATTGAGTACATCAAGTTTCTTCATGATCAAATTCGTGTTTTAAGTACTCCTTATATGGAAGTTGAAAAAAACGATCAAGAGCAGCAACAGATTAAGGAAGAATTGAAAGACACAAAGGAGGAAAAGAAACAAGATCTAAGAAGTGGAGGACTTTGTCTGGTGGGAATTTCTAGGACAATTGCATTAACAAATGGAAATACATTTGATTTCTGGTCGCCAACATTTGGAGGAACATTTAGGTAA | 966 | 39.13 | MAGRKLWDSSKTLFSPAANSPPCSVADPTIPMDSNWNHHFHGYGAQRVDTTLVVDSIEGPKLNYELQETSGSSHEQQNNPSNFVFFIDQPYYNQSPFNLNDNVITTTCQELSMAFPFDTISNEQSRQFLADNRIINCYSSTNSDEFLSCRSMFETHWLQPPPLNFTTKMINCGEVVQDLSGVVRENKSKEIAIIKRPRSDVSSKLPTFKVRKGKLADKIAMLQQLVSPFGKTDTASVLHEAIEYIKFLHDQIRVLSTPYMEVEKNDQEQQQIKEELKDTKEEKKQDLRSGGLCLVGISRTIALTNGNTFDFWSPTFGGTFR | 321 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 15260900 | 15263192 | + | Sed0019261.1 | Sed01g2039 | 701343 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g2039 | 321 | Coils | Coil | 259 | 289 | - | - | |
Sed01g2039 | 321 | CDD | bHLH_AtbHLH_like | 204 | 256 | IPR045239 | - | |
Sed01g2039 | 321 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 209 | 262 | IPR036638 | GO:0046983(InterPro) | |
Sed01g2039 | 321 | Gene3D | - | 207 | 285 | IPR036638 | GO:0046983(InterPro) | |
Sed01g2039 | 321 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 71 | 298 | IPR045843 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER) | |
Sed01g2039 | 321 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 199 | 248 | IPR011598 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g2039 | Sed-Chr1:15260900 | Sed10g0349 | Sed-Chr10:2141688 | 4.50E-38 | dispersed | |
Sed01g3060 | Sed-Chr1:36486018 | Sed01g2039 | Sed-Chr1:15260900 | 9.20E-125 | transposed | |
Sed01g2039 | Sed-Chr1:15260900 | Sed13g1153 | Sed-Chr13:13532768 | 3.80E-37 | wgd | |
Sed01g2039 | Sed-Chr1:15260900 | Sed14g1385 | Sed-Chr14:22611683 | 2.40E-36 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g2039 | - | - | - | 0.0 |