Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g2040 | ATGAATCTCTCTGAATCTCCCTTCTTCCACATACTCTGTTTTTTGCTACTTTTTTTGGATACCCATTTCAGCCTCGCCCTTGATATCATCAAAGATGGACAAAAATTGGTATCCCCCAACAACAATTTCGCCCTTGGATTCTTCAGTTTCAACAATTCCACCACTCCCCGATATGTCGGAATTTGGTTTAACAAAATACCCCAAAGAACCCTCGTCTGGGTTGCCAACAAAAACCACCCCCTCAACGACACATCGGGAACCCTCTCAATCGACCCTCGTGGAAACGTCGTCGTTTCCACCTCCACACAAACCCTTCCTCTTTGGTCCACTAATTACCATTCTACCCAACCGCAAAACGACATGTCGGTTGAGCTTCGGGATACGGGAAATCTCGCGGTGCTTGAACGAGTGAGCCGACGGGTTATTTGGCAGAGCTTCGATTATCCATCCAACGTGCTTCTCCCCTACATGAAACTCGGGGTGAACCGGAAAACCGGGTTCAGTCGGTTTTTAACTTCGTGGAAGGCGCAAGACGATCCGGGAGCCGGGAATTTCAGTTTTCGGATTGACACGACCGGGTATCCGCAGCTGATTTTGTTCAAGGGAGATGTTCCGTGGTGGCGGGGCGGGTCGTGGTCGGGTCGTAGATGGACCGGTGTACCCGAAATGACGAGATCCTTTATAATCAACGTATCCTACGTTGACAATGCTGACGAGACTACTTTCACCTACGGCGTCACGGTCGACACGATTTTTATGAGGATGACTCTAGACGAATCCGGTTCGATGCTCCGGTCCATGTGGTCCGAAAAAGAGCAGAGGTGGAATGAGTTCTTTTCGGTCCCGACCGAGTCGTGCAACTACTACAACCGGTGCGGGATAAACAGTAACTGCGACCCCTACAACACGGGCCAATATCTATGCAAGTGCCTACCCGGGTTCGAACCGCGGTCGGACCGGGATTGGTTCATGAGAGACCCGTCGGGTGGGTGCGTAAGGAAGAGGCTGAACGCCACGTGTGGGAATGGAGAGGGGTTTGTGAAGGTGGCACGTGTGAAGGTGCCGGACTCATCGACGGCACGTGCGGATAAGAGTATGAGTTTAGAAGCGTGCGAACAAGCGTGTTTGAGTGACTGTAACTGTACGGCTTACACGAGCGCAAACGAGACAACGGGGTCGGGGTGCGTGACGTGGCATGGAGATTTGATAGACACGCGAACCTATGCCAACGTGGGTCAAGATCTTTATGTAAGAGTGGATGCAATTGAATTAGCTCAATATGCAGAGAATTCAAATCATCGTTCGACAAAGGTGGTGGTAGCAATTGTGGTGATGCCTTTTATTGCATTGTTGCTGCTTGTGACCTCGCTGGTTTACTTGTGGGAAATGGCAAAAAAAAGAAGGGATCAGAGGACTACGAGTTTATCTTATAATAACTTTGAGGATTCTCCAATTACAAAGGACTTTGATGAAAGTAAAACAAGCTTAGATTTACCTGTCTTTGTTATGGATACCATAGTCAAGGCAACGGACAATTTTTCTTTCAATAACAAGCTTGGAGAAGGTGGCTTTGGCGCAGTTTATAAGGGAAAGCTTAAAAATGGAGAGGAAATTGCAGTAAAAAGGCTGGCTAAGAATTCAGGGCAAGGAGTTGAAGAGTTCAAGAATGAAGTTACTTTAATTGCAAAGCTTCAACATAGAAACCTTGTGAGAATTTTAGGGTACTGTGTTAAAAATGAAGAGAAAATGCTTGTATTTGAATACTTGCCAAACAAAAGCTTGGACTCTTTCATTTTTGATGAAAGCAAGAGGGCGTTGCTTAATTGGAGAAAACGTTTTGAAATCATTTGTGGAGTTGCTCGAGGGCTATTATATCTTCATCAAGATTCAAGATTGAAAATCATCCATCGAGATTTGAAAGCGAGCAATATACTATTAGATGCTAATTTGAATCCTAAAATTGCCGATTTTGGTATGGCGAGAATATTTGGTCAAGATCAAAATCAAGCAAACACAAAACGTATTGCCGGAACATACGGCTACATGTCACCCGAATACGCAATGGCCGGTCTATTCTCAGTGAAATCAGACGTGTATAGCTTTGGAGTCTTAGTGCTAGAGATGATTACAGGCAAAAGAAACACCAACTATGATTCCTCCCACTTAAACTTGGTCGAACATGTCTGGAAACTTTGGAAATTGGACAATGTAATGGAATTGGTGGAATCAAGTTTAGAAGAATCATCATCAAGTTGTGGAGATGAAATTATGAGGTGCTTCCAAATTGGGCTATTGTGTGTGCAGGATGATCCGACAGATCGTCCGACCATGTCGACTGTCGTTTTCATGTTGGGAAATGAAGTTGGTCTTCCTTCTCCAAAGAAGAAATCTGCTTTCATTTTGAACACAAAATACACGAGTGGAGATCCATCCACAGGATCCAACTCTGTAAATGACGTTACTATTTCCATAATCCATGCTCGTTAA | 2487 | 44.99 | MNLSESPFFHILCFLLLFLDTHFSLALDIIKDGQKLVSPNNNFALGFFSFNNSTTPRYVGIWFNKIPQRTLVWVANKNHPLNDTSGTLSIDPRGNVVVSTSTQTLPLWSTNYHSTQPQNDMSVELRDTGNLAVLERVSRRVIWQSFDYPSNVLLPYMKLGVNRKTGFSRFLTSWKAQDDPGAGNFSFRIDTTGYPQLILFKGDVPWWRGGSWSGRRWTGVPEMTRSFIINVSYVDNADETTFTYGVTVDTIFMRMTLDESGSMLRSMWSEKEQRWNEFFSVPTESCNYYNRCGINSNCDPYNTGQYLCKCLPGFEPRSDRDWFMRDPSGGCVRKRLNATCGNGEGFVKVARVKVPDSSTARADKSMSLEACEQACLSDCNCTAYTSANETTGSGCVTWHGDLIDTRTYANVGQDLYVRVDAIELAQYAENSNHRSTKVVVAIVVMPFIALLLLVTSLVYLWEMAKKRRDQRTTSLSYNNFEDSPITKDFDESKTSLDLPVFVMDTIVKATDNFSFNNKLGEGGFGAVYKGKLKNGEEIAVKRLAKNSGQGVEEFKNEVTLIAKLQHRNLVRILGYCVKNEEKMLVFEYLPNKSLDSFIFDESKRALLNWRKRFEIICGVARGLLYLHQDSRLKIIHRDLKASNILLDANLNPKIADFGMARIFGQDQNQANTKRIAGTYGYMSPEYAMAGLFSVKSDVYSFGVLVLEMITGKRNTNYDSSHLNLVEHVWKLWKLDNVMELVESSLEESSSSCGDEIMRCFQIGLLCVQDDPTDRPTMSTVVFMLGNEVGLPSPKKKSAFILNTKYTSGDPSTGSNSVNDVTISIIHAR | 828 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 15263826 | 15268419 | - | Sed0016492.1 | Sed01g2040 | 701344 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g2040 | 828 | Gene3D | Transferase(Phosphotransferase) domain 1 | 589 | 792 | - | - | |
Sed01g2040 | 828 | Gene3D | Phosphorylase Kinase; domain 1 | 487 | 588 | - | - | |
Sed01g2040 | 828 | SMART | blect_4 | 27 | 149 | IPR001480 | - | |
Sed01g2040 | 828 | ProSiteProfiles | PAN/Apple domain profile. | 340 | 420 | IPR003609 | - | |
Sed01g2040 | 828 | Pfam | S-locus glycoprotein domain | 207 | 317 | IPR000858 | GO:0048544(InterPro) | |
Sed01g2040 | 828 | SUPERFAMILY | Protein kinase-like (PK-like) | 490 | 784 | IPR011009 | - | |
Sed01g2040 | 828 | PIRSF | SRK | 2 | 828 | IPR024171 | GO:0004674(InterPro) | |
Sed01g2040 | 828 | SMART | ntp_6 | 341 | 419 | IPR003609 | - | |
Sed01g2040 | 828 | ProSiteProfiles | Bulb-type lectin domain profile. | 21 | 146 | IPR001480 | - | |
Sed01g2040 | 828 | SUPERFAMILY | alpha-D-mannose-specific plant lectins | 71 | 180 | IPR036426 | - | |
Sed01g2040 | 828 | SMART | serkin_6 | 513 | 783 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed01g2040 | 828 | FunFam | G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 | 478 | 588 | - | - | |
Sed01g2040 | 828 | Pfam | Protein tyrosine and serine/threonine kinase | 514 | 781 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed01g2040 | 828 | Gene3D | - | 26 | 146 | IPR036426 | - | |
Sed01g2040 | 828 | CDD | STKc_IRAK | 519 | 784 | - | - | |
Sed01g2040 | 828 | PANTHER | BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN | 12 | 796 | - | - | |
Sed01g2040 | 828 | ProSiteProfiles | Protein kinase domain profile. | 513 | 800 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed01g2040 | 828 | Pfam | D-mannose binding lectin | 70 | 175 | IPR001480 | - | |
Sed01g2040 | 828 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 634 | 646 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed01g2040 | 828 | Pfam | PAN-like domain | 340 | 405 | IPR003609 | - | |
Sed01g2040 | 828 | FunFam | G-type lectin S-receptor-like serine/threonine-protein kinase | 25 | 146 | - | - | |
Sed01g2040 | 828 | ProSitePatterns | Protein kinases ATP-binding region signature. | 519 | 541 | IPR017441 | GO:0005524(InterPro) | |
Sed01g2040 | 828 | CDD | PAN_AP_plant | 341 | 419 | - | - | |
Sed01g2040 | 828 | CDD | B_lectin | 29 | 149 | IPR001480 | - | |
Sed01g2040 | 828 | FunFam | G-type lectin S-receptor-like serine/threonine-protein kinase | 589 | 791 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g2040 | Sed-Chr1:15263826 | Sed04g3135 | Sed-Chr4:42146214 | 6.30E-185 | dispersed | |
Sed09g1562 | Sed-Chr9:39172886 | Sed01g2040 | Sed-Chr1:15263826 | 8.10E-93 | dispersed | |
Sed01g2040 | Sed-Chr1:15263826 | Sed01g2041 | Sed-Chr1:15270679 | 0.00E+00 | tandem | |
Sed01g3061 | Sed-Chr1:36514893 | Sed01g2040 | Sed-Chr1:15263826 | 0.00E+00 | transposed | |
Sed01g2040 | Sed-Chr1:15263826 | Sed14g1388 | Sed-Chr14:22629481 | 8.50E-166 | wgd | |
Sed01g2040 | Sed-Chr1:15263826 | Sed04g3133 | Sed-Chr4:42137069 | 2.40E-94 | wgd | |
Sed01g2040 | Sed-Chr1:15263826 | Sed08g2318 | Sed-Chr8:36558153 | 1.00E-171 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
78639 | PF07714 | PK_Tyr_Ser-Thr | 7.10E-52 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g2040 | - | - | - | 0.0 |