Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2040 ATGAATCTCTCTGAATCTCCCTTCTTCCACATACTCTGTTTTTTGCTACTTTTTTTGGATACCCATTTCAGCCTCGCCCTTGATATCATCAAAGATGGACAAAAATTGGTATCCCCCAACAACAATTTCGCCCTTGGATTCTTCAGTTTCAACAATTCCACCACTCCCCGATATGTCGGAATTTGGTTTAACAAAATACCCCAAAGAACCCTCGTCTGGGTTGCCAACAAAAACCACCCCCTCAACGACACATCGGGAACCCTCTCAATCGACCCTCGTGGAAACGTCGTCGTTTCCACCTCCACACAAACCCTTCCTCTTTGGTCCACTAATTACCATTCTACCCAACCGCAAAACGACATGTCGGTTGAGCTTCGGGATACGGGAAATCTCGCGGTGCTTGAACGAGTGAGCCGACGGGTTATTTGGCAGAGCTTCGATTATCCATCCAACGTGCTTCTCCCCTACATGAAACTCGGGGTGAACCGGAAAACCGGGTTCAGTCGGTTTTTAACTTCGTGGAAGGCGCAAGACGATCCGGGAGCCGGGAATTTCAGTTTTCGGATTGACACGACCGGGTATCCGCAGCTGATTTTGTTCAAGGGAGATGTTCCGTGGTGGCGGGGCGGGTCGTGGTCGGGTCGTAGATGGACCGGTGTACCCGAAATGACGAGATCCTTTATAATCAACGTATCCTACGTTGACAATGCTGACGAGACTACTTTCACCTACGGCGTCACGGTCGACACGATTTTTATGAGGATGACTCTAGACGAATCCGGTTCGATGCTCCGGTCCATGTGGTCCGAAAAAGAGCAGAGGTGGAATGAGTTCTTTTCGGTCCCGACCGAGTCGTGCAACTACTACAACCGGTGCGGGATAAACAGTAACTGCGACCCCTACAACACGGGCCAATATCTATGCAAGTGCCTACCCGGGTTCGAACCGCGGTCGGACCGGGATTGGTTCATGAGAGACCCGTCGGGTGGGTGCGTAAGGAAGAGGCTGAACGCCACGTGTGGGAATGGAGAGGGGTTTGTGAAGGTGGCACGTGTGAAGGTGCCGGACTCATCGACGGCACGTGCGGATAAGAGTATGAGTTTAGAAGCGTGCGAACAAGCGTGTTTGAGTGACTGTAACTGTACGGCTTACACGAGCGCAAACGAGACAACGGGGTCGGGGTGCGTGACGTGGCATGGAGATTTGATAGACACGCGAACCTATGCCAACGTGGGTCAAGATCTTTATGTAAGAGTGGATGCAATTGAATTAGCTCAATATGCAGAGAATTCAAATCATCGTTCGACAAAGGTGGTGGTAGCAATTGTGGTGATGCCTTTTATTGCATTGTTGCTGCTTGTGACCTCGCTGGTTTACTTGTGGGAAATGGCAAAAAAAAGAAGGGATCAGAGGACTACGAGTTTATCTTATAATAACTTTGAGGATTCTCCAATTACAAAGGACTTTGATGAAAGTAAAACAAGCTTAGATTTACCTGTCTTTGTTATGGATACCATAGTCAAGGCAACGGACAATTTTTCTTTCAATAACAAGCTTGGAGAAGGTGGCTTTGGCGCAGTTTATAAGGGAAAGCTTAAAAATGGAGAGGAAATTGCAGTAAAAAGGCTGGCTAAGAATTCAGGGCAAGGAGTTGAAGAGTTCAAGAATGAAGTTACTTTAATTGCAAAGCTTCAACATAGAAACCTTGTGAGAATTTTAGGGTACTGTGTTAAAAATGAAGAGAAAATGCTTGTATTTGAATACTTGCCAAACAAAAGCTTGGACTCTTTCATTTTTGATGAAAGCAAGAGGGCGTTGCTTAATTGGAGAAAACGTTTTGAAATCATTTGTGGAGTTGCTCGAGGGCTATTATATCTTCATCAAGATTCAAGATTGAAAATCATCCATCGAGATTTGAAAGCGAGCAATATACTATTAGATGCTAATTTGAATCCTAAAATTGCCGATTTTGGTATGGCGAGAATATTTGGTCAAGATCAAAATCAAGCAAACACAAAACGTATTGCCGGAACATACGGCTACATGTCACCCGAATACGCAATGGCCGGTCTATTCTCAGTGAAATCAGACGTGTATAGCTTTGGAGTCTTAGTGCTAGAGATGATTACAGGCAAAAGAAACACCAACTATGATTCCTCCCACTTAAACTTGGTCGAACATGTCTGGAAACTTTGGAAATTGGACAATGTAATGGAATTGGTGGAATCAAGTTTAGAAGAATCATCATCAAGTTGTGGAGATGAAATTATGAGGTGCTTCCAAATTGGGCTATTGTGTGTGCAGGATGATCCGACAGATCGTCCGACCATGTCGACTGTCGTTTTCATGTTGGGAAATGAAGTTGGTCTTCCTTCTCCAAAGAAGAAATCTGCTTTCATTTTGAACACAAAATACACGAGTGGAGATCCATCCACAGGATCCAACTCTGTAAATGACGTTACTATTTCCATAATCCATGCTCGTTAA 2487 44.99 MNLSESPFFHILCFLLLFLDTHFSLALDIIKDGQKLVSPNNNFALGFFSFNNSTTPRYVGIWFNKIPQRTLVWVANKNHPLNDTSGTLSIDPRGNVVVSTSTQTLPLWSTNYHSTQPQNDMSVELRDTGNLAVLERVSRRVIWQSFDYPSNVLLPYMKLGVNRKTGFSRFLTSWKAQDDPGAGNFSFRIDTTGYPQLILFKGDVPWWRGGSWSGRRWTGVPEMTRSFIINVSYVDNADETTFTYGVTVDTIFMRMTLDESGSMLRSMWSEKEQRWNEFFSVPTESCNYYNRCGINSNCDPYNTGQYLCKCLPGFEPRSDRDWFMRDPSGGCVRKRLNATCGNGEGFVKVARVKVPDSSTARADKSMSLEACEQACLSDCNCTAYTSANETTGSGCVTWHGDLIDTRTYANVGQDLYVRVDAIELAQYAENSNHRSTKVVVAIVVMPFIALLLLVTSLVYLWEMAKKRRDQRTTSLSYNNFEDSPITKDFDESKTSLDLPVFVMDTIVKATDNFSFNNKLGEGGFGAVYKGKLKNGEEIAVKRLAKNSGQGVEEFKNEVTLIAKLQHRNLVRILGYCVKNEEKMLVFEYLPNKSLDSFIFDESKRALLNWRKRFEIICGVARGLLYLHQDSRLKIIHRDLKASNILLDANLNPKIADFGMARIFGQDQNQANTKRIAGTYGYMSPEYAMAGLFSVKSDVYSFGVLVLEMITGKRNTNYDSSHLNLVEHVWKLWKLDNVMELVESSLEESSSSCGDEIMRCFQIGLLCVQDDPTDRPTMSTVVFMLGNEVGLPSPKKKSAFILNTKYTSGDPSTGSNSVNDVTISIIHAR 828
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 15263826 15268419 - Sed0016492.1 Sed01g2040 701344
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2040 828 Gene3D Transferase(Phosphotransferase) domain 1 589 792 - -
Sed01g2040 828 Gene3D Phosphorylase Kinase; domain 1 487 588 - -
Sed01g2040 828 SMART blect_4 27 149 IPR001480 -
Sed01g2040 828 ProSiteProfiles PAN/Apple domain profile. 340 420 IPR003609 -
Sed01g2040 828 Pfam S-locus glycoprotein domain 207 317 IPR000858 GO:0048544(InterPro)
Sed01g2040 828 SUPERFAMILY Protein kinase-like (PK-like) 490 784 IPR011009 -
Sed01g2040 828 PIRSF SRK 2 828 IPR024171 GO:0004674(InterPro)
Sed01g2040 828 SMART ntp_6 341 419 IPR003609 -
Sed01g2040 828 ProSiteProfiles Bulb-type lectin domain profile. 21 146 IPR001480 -
Sed01g2040 828 SUPERFAMILY alpha-D-mannose-specific plant lectins 71 180 IPR036426 -
Sed01g2040 828 SMART serkin_6 513 783 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g2040 828 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 478 588 - -
Sed01g2040 828 Pfam Protein tyrosine and serine/threonine kinase 514 781 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g2040 828 Gene3D - 26 146 IPR036426 -
Sed01g2040 828 CDD STKc_IRAK 519 784 - -
Sed01g2040 828 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 12 796 - -
Sed01g2040 828 ProSiteProfiles Protein kinase domain profile. 513 800 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g2040 828 Pfam D-mannose binding lectin 70 175 IPR001480 -
Sed01g2040 828 ProSitePatterns Serine/Threonine protein kinases active-site signature. 634 646 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g2040 828 Pfam PAN-like domain 340 405 IPR003609 -
Sed01g2040 828 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 25 146 - -
Sed01g2040 828 ProSitePatterns Protein kinases ATP-binding region signature. 519 541 IPR017441 GO:0005524(InterPro)
Sed01g2040 828 CDD PAN_AP_plant 341 419 - -
Sed01g2040 828 CDD B_lectin 29 149 IPR001480 -
Sed01g2040 828 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 589 791 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2040 Sed-Chr1:15263826 Sed04g3135 Sed-Chr4:42146214 6.30E-185 dispersed
Sed09g1562 Sed-Chr9:39172886 Sed01g2040 Sed-Chr1:15263826 8.10E-93 dispersed
Sed01g2040 Sed-Chr1:15263826 Sed01g2041 Sed-Chr1:15270679 0.00E+00 tandem
Sed01g3061 Sed-Chr1:36514893 Sed01g2040 Sed-Chr1:15263826 0.00E+00 transposed
Sed01g2040 Sed-Chr1:15263826 Sed14g1388 Sed-Chr14:22629481 8.50E-166 wgd
Sed01g2040 Sed-Chr1:15263826 Sed04g3133 Sed-Chr4:42137069 2.40E-94 wgd
Sed01g2040 Sed-Chr1:15263826 Sed08g2318 Sed-Chr8:36558153 1.00E-171 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78639 PF07714 PK_Tyr_Ser-Thr 7.10E-52 CL0016 Sed PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2040 - - - 0.0