Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2041 ATGAATCTCTCTAAATCTCCCTTCTTCCACATACTCTGTTTTTTGCTACTTTTTTTGGATACCCATTTCAGCCTCGCCCTTGATATCATCAAAGATGGACACAAATTGGTATCCCCCAACAACAATTTCGCCCTTGGATTCTTCAGTTTCAACAATTCCACTACTCCCCGATATGTCGGAATTTGGTTCAACAAAATTCCCCAACTAACGCTCGTTTGGGTTGCCAACAAAAACCACCCCCTCAACGACACATCGGGAACTCTCTCAATCGACCCTCGTGGAAACGTCGTCGTTTCCACCGCCACACAAACCCTTTCTCTTTGGTCCACTAATTACAATTCTACCCAATCGCAAAACGACATCCGACGGGTTATTTGGCAGAGCTTCGATTATCCATCCAACGTGCTTCTCCCCTACATGAAACTCGGGGTGAACCGGAAAACCGGGTTCAGTCGGTTTTTAACTTCGTGGAAGGCGCAAGACGATCCGGGAACCGGGAATTTCAGTTTCCGGATTGACACGACCGGGTATCCGCAGCTGATTTTGTATAAGGGGGATGTTCCATGGTGGCGGGGCGGGTCGTGGACGGGTCATAGATGGAGCGGTGTACCCGAAATGACAAGATCCTTTGTAATCAACGTATCCTACGTTGATAATGCTGACGAAACTAGTATAACCACCGGTGTAACGGTCGACACAATTTTAATGAGGATGACTCTAGACGAATCCGGTTCGGTGCATCGGTCCAGGTGGAATGAAAAAGAACAGAAGTGGAATGAATTTTGGTCCGCCCCGACCGAGTGGTGCGACTTCTACAACCGGTGCGGACTAAACAGTAACTGCGACCCCTACAACACGGACCAATTTCAATGCAAGTGCCTACCCGGAGACCCGTCGGGTGGGTGCATAAGGAAGAGACCAAACGCCACGTGTGGGAATGGAGAGGGGTTTGTGAAGGTAGCACGTGTGAGGGTGCCGGACACATCGACGGCACGTGGGAACAAAAGTATGAGTTTAGAAGCGTGCGAAGAAGCGTGTTTGAAGGACTGTAACTGTACGGCTTACACGAGCGCAAATGAGACAACGGGGACGGGGTGCGTGACGTGGCATGGAGATTTGATAGACACGCGAACCTATGCCAACGTGGGTCAAGATCTTTATGTAAGAGTGGATGCTGTTGAATTAGCTCAATATGCAGCGAATTCAAATCATCGTCCGACAAAGAAGGTGGTAGCAATTTTGGTCGTATCTTTTGTTGCATTGTTGCTGCTTGTGACCTCCCTCGTTTACTTATGGGAAATGGCAAAAAAAAGAGGGGAGAGGTCAACGAGTTTATCTTATAATGACTTTGAGGATTCTCCAATTCCAAAGGACTTTGATGAAAGTCAAAGGAGCTCAGATTTGCCTGTATTTGATTTGGATACCATAGCAAAGGCAACGGACAATTTTTCTTTCAATAATAAGCTTGGAGAAGGTGGCTTTGGTGCAGTTTATAAGGGAAAGCTTAAAAATGGAGAGGAAATTGCAGTAAAAAGGCTGGCTAAGAATTCAGGGCAAGGAGTTGGAGAGTTCAAGAATGAAGTTACTTTAATTGCAAAGCTTCAACATAGAAACCTTGTGAGAATTTTAGGGTACTGCGTTAAGAATGAAGAGAAAATGCTTGTATATGAATACTTGCCAAACAAAAGCTTGGACTCTTTCATTTTTGATGAAAGCAAGAGGGCTTTGCTTAGTTGGAGAAAACGTTTTGAAATCATATGTGGAGTCGCCCGAGGGCTGTTGTATCTTCATCAAGATTCAAGATTGAAAATCATCCATCGAGATTTGAAAGCTAGCAATATACTACTAGATGGTGATTTGAATCCTAAAATTGCTGATTTTGGTATGGCAAGAATATTTGGTCAAGATCAAATTCAAGCGAACACCAACCGTATTGTCGGAACATACGGCTACATGTCACCCGAGTACGCAATGGAAGGTCTATTCTCAGTAAAATCCGACGTATATAGCTTCGGAGTCTTAGTCCTAGAGATGATTACAGGCAGAAAAAACACCAACTATGATTCCTCCTTCTTAAACTTGGTCGGACATGTTTGGGAGCTTTGGAAATTGAAGAACACAATGGAACTAGTAGACTCAAGTTTAGAAGAATCATCAAAATGTGGAGATGAAATTATGAGATGCTTCCAAATTGGATTATTGTGTGTGCAAGAGGATCCGACAGATCGTCCGACCATGTCGACTGTCGTTTTCATGTTGGGAAATGAAGTTGGTCTTCCTTCTCCAAACAAACCTGCTTTTATTTTGAAGAGAAAATACACCAGTGGAGATCCGTCCACCAGTACGGAAGGAGCCAGCTCTGTAAATGACATAACCATTTCTATAATCCATGCTCGTTAA 2400 44.29 MNLSKSPFFHILCFLLLFLDTHFSLALDIIKDGHKLVSPNNNFALGFFSFNNSTTPRYVGIWFNKIPQLTLVWVANKNHPLNDTSGTLSIDPRGNVVVSTATQTLSLWSTNYNSTQSQNDIRRVIWQSFDYPSNVLLPYMKLGVNRKTGFSRFLTSWKAQDDPGTGNFSFRIDTTGYPQLILYKGDVPWWRGGSWTGHRWSGVPEMTRSFVINVSYVDNADETSITTGVTVDTILMRMTLDESGSVHRSRWNEKEQKWNEFWSAPTEWCDFYNRCGLNSNCDPYNTDQFQCKCLPGDPSGGCIRKRPNATCGNGEGFVKVARVRVPDTSTARGNKSMSLEACEEACLKDCNCTAYTSANETTGTGCVTWHGDLIDTRTYANVGQDLYVRVDAVELAQYAANSNHRPTKKVVAILVVSFVALLLLVTSLVYLWEMAKKRGERSTSLSYNDFEDSPIPKDFDESQRSSDLPVFDLDTIAKATDNFSFNNKLGEGGFGAVYKGKLKNGEEIAVKRLAKNSGQGVGEFKNEVTLIAKLQHRNLVRILGYCVKNEEKMLVYEYLPNKSLDSFIFDESKRALLSWRKRFEIICGVARGLLYLHQDSRLKIIHRDLKASNILLDGDLNPKIADFGMARIFGQDQIQANTNRIVGTYGYMSPEYAMEGLFSVKSDVYSFGVLVLEMITGRKNTNYDSSFLNLVGHVWELWKLKNTMELVDSSLEESSKCGDEIMRCFQIGLLCVQEDPTDRPTMSTVVFMLGNEVGLPSPNKPAFILKRKYTSGDPSTSTEGASSVNDITISIIHAR 799
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15270679 15275157 - Sed0026892.1 Sed01g2041 701345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2041 799 Gene3D - 26 194 IPR036426 -
Sed01g2041 799 SMART blect_4 27 132 IPR001480 -
Sed01g2041 799 Gene3D Phosphorylase Kinase; domain 1 457 558 - -
Sed01g2041 799 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 12 765 - -
Sed01g2041 799 Gene3D Transferase(Phosphotransferase) domain 1 559 758 - -
Sed01g2041 799 ProSitePatterns Protein kinases ATP-binding region signature. 489 511 IPR017441 GO:0005524(InterPro)
Sed01g2041 799 SMART serkin_6 483 752 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g2041 799 Pfam Domain of unknown function (DUF3403) 756 799 IPR021820 GO:0004674(InterPro)
Sed01g2041 799 CDD B_lectin 29 132 IPR001480 -
Sed01g2041 799 ProSiteProfiles PAN/Apple domain profile. 311 391 IPR003609 -
Sed01g2041 799 ProSiteProfiles Protein kinase domain profile. 483 767 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g2041 799 Pfam Protein tyrosine and serine/threonine kinase 484 750 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g2041 799 SUPERFAMILY alpha-D-mannose-specific plant lectins 71 163 IPR036426 -
Sed01g2041 799 SMART ntp_6 312 390 IPR003609 -
Sed01g2041 799 SUPERFAMILY Protein kinase-like (PK-like) 460 753 IPR011009 -
Sed01g2041 799 PIRSF SRK 2 799 IPR024171 GO:0004674(InterPro)
Sed01g2041 799 ProSitePatterns Serine/Threonine protein kinases active-site signature. 604 616 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g2041 799 CDD STKc_IRAK 489 753 - -
Sed01g2041 799 CDD PAN_AP_plant 312 390 - -
Sed01g2041 799 ProSiteProfiles Bulb-type lectin domain profile. 21 150 IPR001480 -
Sed01g2041 799 Pfam D-mannose binding lectin 118 158 IPR001480 -
Sed01g2041 799 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 559 760 - -
Sed01g2041 799 Pfam PAN-like domain 311 376 IPR003609 -
Sed01g2041 799 Pfam S-locus glycoprotein domain 190 296 IPR000858 GO:0048544(InterPro)
Sed01g2041 799 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 450 558 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2041 Sed-Chr1:15270679 Sed01g3061 Sed-Chr1:36514893 1.90E-287 dispersed
Sed01g2040 Sed-Chr1:15263826 Sed01g2041 Sed-Chr1:15270679 0.00E+00 tandem
Sed01g2041 Sed-Chr1:15270679 Sed01g2042 Sed-Chr1:15278381 6.30E-166 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78640 PF07714 PK_Tyr_Ser-Thr 3.20E-50 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2041 - - - 0.0