Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2042 ATGAAACCTATTATTCCATTAATCCTTCTTCCCGTTTGCTTCATTTTCAAACTTTCGAGCAGCTTAGATTCGATCACATCCTCGCAATTCCTCAAAGACCCACAAACCATATTGTCGAATCGTGGCTTCTTCGAACTGGGTTTCTTCTCCCCTTTCAATTCCACCAATCGCTTCATCGGAATCTGGGATAAACGAGTGCCTGTCCCAACTGTATTCTGGGTAGCAAACAGAGACAAACCTCTCAACAACAAATCCGGGGTTTTAGCCATATCCAAAGATGGGAATCTTGTGGTATTAGATGAGCACAACAATACTCTTTGGAATTCAAATGTTTCAAATCCTGCAGTTAATTCAACCGCTCGGCTTCTGGATTCTGGAAACCTTGTTCTGCAACACTCTGTTTCAGGGTCCATTATATGGGAGAGTTTCAAACACCCATCAGACAAGTTTTTGGCAATGATGAAATTCATCACAAACTCAGTCACAAACGACAGAGTTGAAATCAAGTCATGGAAAAGCCCTTCGGATCCATCCTCTGGAGATTTCACATTTGGAATCGACCCTTTTATGATCCCTGAAATTAAGATTTGGAAAAACCGCCTACAGTATTGGCGGTCCGGTCCATGGGATAGACAAGTTTTCATTGGAGTACCATCTATGAACACTGACTATTTGTATGGAGGTAATCTCGTAGTCGAAAACAATACTTACTCTCTTTCGATTGCGAATTCAAACGAAGCTCACCTATTCTTTTATTACTTAAACTCCAATGGGACATTGCAAGAGAAACAATGGGATATTGAGAATCAGAAATGGAAGGTTACTTGGTCAGCTCCTGATTCAGAGTGTGATGTTTATGGTACTTGTGGGGCATTTGGGATCTGTGATTCTCACAAGCTCCCAATTTGTGGTTGTTTAAAGGGTTTTAAGGCAGTGAATGAAGAGGAATGGAGCAGAGGAAATTGGAGAAGTGGGTGTGTGAGGAATTCGCCATGGGAGTGCGAGAGAAAAAATTTGAGTGCTGAAGTGGGAAAAAAGGATGGATTTTTGAAGGTGGAAATGGTTAAAGTTCCAGCTTTTGCAGATTGGTTGGATGCTTCTAAAGATGAGTGCAGAATCCAGTGTTTGGCTAATTGTTCTTGTTCTGCTTATGCATATAGAATGGGGATTGGTTGTATGATATGGAGAGGAGATTTAATTGACATTCAAAAGTTTAGTAATGGTGGAGCAGACATTTATGTTCGTGTGGCATATTCAGAGTTAGCTGATGAAAGTGGAGCCACCAAAGACATGAAAGTAGTCATTATAGCATCTGTGATACCAGGAACCATCATACTAATCTGCTGCATATATTGCTTTTGGAAAAGGAAAAGGCAGATAAAGTTTTGGTTTAATAATAGTGATATGAAGCATGACAAAATGGAACAAGCTAAGCCCCAAGAGCTGCCATTTTATGATATTGAGAAGCTGGAAACTGCTACCAACAACTTTCATTTCAATAACAAGCTTGGTCAGGGTGGATTTGGGCCAGTGTACAAGGGAAAATTGAAAGATGGACAAGAAATAGCAGTAAAGAGGCTTTCAAGGATGTCTGGACAAGGGCTTGAAGAGTTTACTAATGAAGTAATGGTGATTTCTAAACTACAACATAGAAATCTTGTGCAGCTTTATGGATGTTGCGTTGAAGGAGAAGAAAGGATGCTAGTCTATGAGTACATGCTCAATGGAAGTTTGGATTCAATTATTTTTGATTCAACCAAAAGAAAAAGTTTAGATTGGCGAAAAAGATTCAACATAATTGAAGGAGTTGCTCGAGGGCTCCTATATCTTCATAGAGACTCGAGGCTGAAAATCGTTCACAGAGACCTCAAAGCTGGTAATGTTTTATTAGACGGAGATTTGAATCCCAAAATTTCAGATTTTGGTACTGCTAGAGTTTATTACAGTAATCAAGCTCAAGAAAAAACTGCAAGGATTGTGGGCACTTTTGGTTATATGTCTCCCGAATATGTGATGAATGGTCAATTCTCAGAGAAATCCGATGTCTTTAGCTTTGGCGTTTTGTTGCTTGAAATTATTAGTGGAAGAAAAAACACAAGTTTTTACAATAGCGAACATGCCTTGAGCCTTGTAGGATTTGCATGGAAATTATGGATTGAGAATAATTCTGTTGCTTTGGTTGATGAAACCATGCTTGAATTGCATTATCAAACAGAAGTTTCAAGGTGCATTCATGTGGGACTTTTGTGCGTTCAAGAATTTGTAAACGATAGACCAAATATATCGACCATTCTTTCGATGCTTCACAATGAGATCACAGACCTTCCAGTGCCAAAGCAACCTGGATTTAGCAACAGGCTAATTGAGCTTCATACAGATCAAAATCATGTTGGAACTTGTTCAAAAAACATGATCACAATTACCTCATTTGAAGGTCGATAA 2442 39.15 MKPIIPLILLPVCFIFKLSSSLDSITSSQFLKDPQTILSNRGFFELGFFSPFNSTNRFIGIWDKRVPVPTVFWVANRDKPLNNKSGVLAISKDGNLVVLDEHNNTLWNSNVSNPAVNSTARLLDSGNLVLQHSVSGSIIWESFKHPSDKFLAMMKFITNSVTNDRVEIKSWKSPSDPSSGDFTFGIDPFMIPEIKIWKNRLQYWRSGPWDRQVFIGVPSMNTDYLYGGNLVVENNTYSLSIANSNEAHLFFYYLNSNGTLQEKQWDIENQKWKVTWSAPDSECDVYGTCGAFGICDSHKLPICGCLKGFKAVNEEEWSRGNWRSGCVRNSPWECERKNLSAEVGKKDGFLKVEMVKVPAFADWLDASKDECRIQCLANCSCSAYAYRMGIGCMIWRGDLIDIQKFSNGGADIYVRVAYSELADESGATKDMKVVIIASVIPGTIILICCIYCFWKRKRQIKFWFNNSDMKHDKMEQAKPQELPFYDIEKLETATNNFHFNNKLGQGGFGPVYKGKLKDGQEIAVKRLSRMSGQGLEEFTNEVMVISKLQHRNLVQLYGCCVEGEERMLVYEYMLNGSLDSIIFDSTKRKSLDWRKRFNIIEGVARGLLYLHRDSRLKIVHRDLKAGNVLLDGDLNPKISDFGTARVYYSNQAQEKTARIVGTFGYMSPEYVMNGQFSEKSDVFSFGVLLLEIISGRKNTSFYNSEHALSLVGFAWKLWIENNSVALVDETMLELHYQTEVSRCIHVGLLCVQEFVNDRPNISTILSMLHNEITDLPVPKQPGFSNRLIELHTDQNHVGTCSKNMITITSFEGR 813
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15278381 15281688 - Sed0006168.1 Sed01g2042 701346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2042 813 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 462 572 - -
Sed01g2042 813 CDD STKc_IRAK 503 768 - -
Sed01g2042 813 SMART blect_4 28 146 IPR001480 -
Sed01g2042 813 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 18 143 - -
Sed01g2042 813 ProSitePatterns Serine/Threonine protein kinases active-site signature. 618 630 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g2042 813 Pfam PAN-like domain 345 402 IPR003609 -
Sed01g2042 813 ProSiteProfiles PAN/Apple domain profile. 334 417 IPR003609 -
Sed01g2042 813 Pfam D-mannose binding lectin 70 172 IPR001480 -
Sed01g2042 813 Gene3D Phosphorylase Kinase; domain 1 459 572 - -
Sed01g2042 813 SUPERFAMILY Protein kinase-like (PK-like) 481 795 IPR011009 -
Sed01g2042 813 Pfam S-locus glycoprotein domain 204 311 IPR000858 GO:0048544(InterPro)
Sed01g2042 813 Pfam Protein tyrosine and serine/threonine kinase 498 764 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g2042 813 SMART serkin_6 497 772 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g2042 813 PIRSF SRK 1 813 IPR024171 GO:0004674(InterPro)
Sed01g2042 813 CDD B_lectin 29 146 IPR001480 -
Sed01g2042 813 Gene3D - 17 144 IPR036426 -
Sed01g2042 813 CDD PAN_AP_plant 344 417 - -
Sed01g2042 813 ProSiteProfiles Protein kinase domain profile. 497 772 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g2042 813 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 573 778 - -
Sed01g2042 813 ProSiteProfiles Bulb-type lectin domain profile. 22 143 IPR001480 -
Sed01g2042 813 Gene3D Transferase(Phosphotransferase) domain 1 573 776 - -
Sed01g2042 813 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 18 782 - -
Sed01g2042 813 SMART ntp_6 344 416 IPR003609 -
Sed01g2042 813 SUPERFAMILY alpha-D-mannose-specific plant lectins 66 210 IPR036426 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2042 Sed-Chr1:15278381 Sed01g2048 Sed-Chr1:15317650 2.30E-277 dispersed
Sed01g2041 Sed-Chr1:15270679 Sed01g2042 Sed-Chr1:15278381 6.30E-166 tandem
Sed01g2042 Sed-Chr1:15278381 Sed01g2043 Sed-Chr1:15282753 2.10E-53 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78641 PF07714 PK_Tyr_Ser-Thr 1.00E-49 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2042 - - - 0.0