Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2046 ATGAATCCCCAAACCATTTGCAATTCTTCATCTTCTCTTCTTCTTCTTCTGCTTCTTCTTCTTCTTCTTCTTTCATTTTCATGTTTCTGTTCAGGGTTAAGCTTCGGGGTCAAAGATACAATCACATCAACCAATTTCATCCAAGAACCTGCAACCATAGTTTCCAATTCCAGTTACTTCGAGTTGGGGTTCTTCACACCTCCCAACTCTACAAACCGATATGTCGGAATCTGGTTCAAGCACAAGCAAATGTATCCACGAACTGTAGTATGGGTGGCTAATTCAGACAACCCTCTTAATGACACTTCTGCTGGGTTTTTTACTGTTTCTCAAAATGGGGATCTTGCAGTGTTAGATTCAAAAAACACCACCATTTGGTCAACCAATGTGTCTTCTCCTGCAATCAACAACACAAGGGCTCGGATTTTAGATTCAGGGAAACTCGTTTTGGAAGATACTGCTTCAGGGGCGACAATTTGGGAGAGTTTCAATCACCCTTCTGATAAATACTTGCCTTCCATGAAACTTGTAACCAACTCAACAACAAAAGAGAATATCGGCCTAACCTCATGGAAGAGCCCTTCTGATCCATCCAAGGGTAACTTTTCCTTAACTCTTCATGTTCATAATATTCCTGAAATTGTCATTTGGAATCACCTTGACATACATTGGAGGTCTGGTCCATGGGACGGTCAAACTTTTATTGGTATACCCAACATGATGTCTGTCTATCTCTTGGGAATTACCATCAGACTTTTAGGCCAAACTTACACTCTCTCTATTACATACAACGATGGTGTTCAAATATCTGCTTGCCTCTTTTTGAGTTCTCAAGGGAATGTCGGGTATATGGACTATGATTATACAGAGATGCAATGGAAGCCTAGTAGGTCGGCAATTCAATCGGAATGCGATATGTATGGCCTTTGTGGGGCATTTGGGATCTGTAATGCAAAAACATCCCATGTTTGCAGTTGTTTAGATGGGTTTAGACCAAAGAATGAAAAGGAATGGAATTCTGGGAATTGGACTGATGGGTGTGTGAGAAATACGCATTTGAAGTGCAACGCCAGTGCTAAAGAAGAAGATGGGTTCTTGAAATTGGAAATGGTCAAAGTTCCTTTTTTTGCAGAGTCGTCTATTAATAATTCATCATTTTCAGTGGATGATTGCAGAAAAGAGTGCTTGCAAAATTGTTCATGTAATGCCTATGCATTTGCAAATACTCTTGGTTGCATGCATTGGAGAAATGACTTGATTGATGTACAGAAGTTTGAGAGCGGTGGTGCTGATCTTTATCTTCGAATGGCTTATGCAGATTTACATAAAAATAATAAAAAGAACGATAAAGGAATTATCATTGCCGTAGGGCTACCAACGCTTATCATGTTCATCATTCTCATATCATTCTTAGGTTGGAGATGGAAAAAAGCTCGCAAACATGTAAAGAAGAAAAATATAGTGTCTAGCAAAAAGGAGAAGATTTCGAAGCAGAAAAAAAATGATATGATTGACGATGAAATTAAACTTGAGGAGTTGCCTCTTTATGATTTAGAGGAGCTAGAAATTGCTACAAACAGCTTTGACTTAAATAACAAACTTGGACAAGGTGGCTTTGGGCCAGTATATAAGGGAAAACTAACAAATGGAGATGAAATAGCGATAAAGAGGCTTTCAAAAGCTTCTGACCAAGGCTATGAAGAATTTATAAATGAAGTGAGAGTCATTTCGAAACTGCAGCATAGGAATCTTGTGCGGCTTCTTGGTTGCTGCATTGAAGGAGAAGAGAAGATGTTAATTTATGAGTACATGCCAAACTTAAGTTTGGATGCGTTCATCTTTGATTCAATTAAACAACAACTTCTAGACTGGAGAAAAAGATTTAATATTATTGATGGAATTGCTCGTGGTCTCCTTTACCTTCATAGAGATTCAAGATTGAAAATCATTCATCGAGATCTAAAGGCCAGTAATATTTTGTTAGACAATGATTTGAATCCTAAGATCTCTGATTTTGGTATGGCTAGAATTTTTTGTGGTAATGAAGTGCAAGCCAATACTTTAAGGGTCGTGGGAACTTATGGGTATATGTCACCTGAATATGCTATGCAAGGTCAATTTTCAGAGAAATCAGACGTATTTAGTTTTGGAGTTTTATTACTTGAGGTTATAAGTGGGAGAAGAAATACAGGATTTTACAGTCACGAACATTCCTTGAGCTTATTGGAATTTGCATGGAAGCTGTGGATTGAGAATAATGTTATTTCTTTGATTGATCCAACAATATATGAATCGTGCTACCAATCTGAGATTGTAAAGTGCATCCAAGTGGGACTCTTATGTGTGGAAGAATTTATAAATGACAGACCAAATATGCTGTCCATCATTTCAATGCTCAACAGTGAAATCATAGATCTTCCCATTCCCAAACAGCCTAGCTTCATTGGTAGACAACTTCATGAGAGTAGCTCCTCATCTTCTCAGCTGCAATGTGTGGATAACTATTCTTTAAATAATGTTACACATACCACTTTAATTGGTCGGTAG 2547 37.93 MNPQTICNSSSSLLLLLLLLLLLLSFSCFCSGLSFGVKDTITSTNFIQEPATIVSNSSYFELGFFTPPNSTNRYVGIWFKHKQMYPRTVVWVANSDNPLNDTSAGFFTVSQNGDLAVLDSKNTTIWSTNVSSPAINNTRARILDSGKLVLEDTASGATIWESFNHPSDKYLPSMKLVTNSTTKENIGLTSWKSPSDPSKGNFSLTLHVHNIPEIVIWNHLDIHWRSGPWDGQTFIGIPNMMSVYLLGITIRLLGQTYTLSITYNDGVQISACLFLSSQGNVGYMDYDYTEMQWKPSRSAIQSECDMYGLCGAFGICNAKTSHVCSCLDGFRPKNEKEWNSGNWTDGCVRNTHLKCNASAKEEDGFLKLEMVKVPFFAESSINNSSFSVDDCRKECLQNCSCNAYAFANTLGCMHWRNDLIDVQKFESGGADLYLRMAYADLHKNNKKNDKGIIIAVGLPTLIMFIILISFLGWRWKKARKHVKKKNIVSSKKEKISKQKKNDMIDDEIKLEELPLYDLEELEIATNSFDLNNKLGQGGFGPVYKGKLTNGDEIAIKRLSKASDQGYEEFINEVRVISKLQHRNLVRLLGCCIEGEEKMLIYEYMPNLSLDAFIFDSIKQQLLDWRKRFNIIDGIARGLLYLHRDSRLKIIHRDLKASNILLDNDLNPKISDFGMARIFCGNEVQANTLRVVGTYGYMSPEYAMQGQFSEKSDVFSFGVLLLEVISGRRNTGFYSHEHSLSLLEFAWKLWIENNVISLIDPTIYESCYQSEIVKCIQVGLLCVEEFINDRPNMLSIISMLNSEIIDLPIPKQPSFIGRQLHESSSSSSQLQCVDNYSLNNVTHTTLIGR 848
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15305645 15316931 + Sed0024228.1 Sed01g2046 701350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2046 848 CDD STKc_IRAK 534 800 - -
Sed01g2046 848 Pfam PAN-like domain 355 422 IPR003609 -
Sed01g2046 848 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 24 812 - -
Sed01g2046 848 Gene3D - 34 164 IPR036426 -
Sed01g2046 848 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 490 603 - -
Sed01g2046 848 CDD B_lectin 44 166 IPR001480 -
Sed01g2046 848 SMART blect_4 44 166 IPR001480 -
Sed01g2046 848 SMART ntp_6 360 436 IPR003609 -
Sed01g2046 848 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 604 807 - -
Sed01g2046 848 CDD EGF_CA 303 334 - -
Sed01g2046 848 Pfam S-locus glycoprotein domain 224 334 IPR000858 GO:0048544(InterPro)
Sed01g2046 848 PIRSF SRK 8 848 IPR024171 GO:0004674(InterPro)
Sed01g2046 848 Pfam Protein tyrosine and serine/threonine kinase 530 794 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g2046 848 ProSiteProfiles PAN/Apple domain profile. 355 437 IPR003609 -
Sed01g2046 848 SMART serkin_6 528 804 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g2046 848 ProSiteProfiles Protein kinase domain profile. 528 804 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g2046 848 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 35 163 - -
Sed01g2046 848 Pfam D-mannose binding lectin 88 192 IPR001480 -
Sed01g2046 848 SUPERFAMILY Protein kinase-like (PK-like) 513 828 IPR011009 -
Sed01g2046 848 SUPERFAMILY alpha-D-mannose-specific plant lectins 88 231 IPR036426 -
Sed01g2046 848 ProSiteProfiles Bulb-type lectin domain profile. 38 163 IPR001480 -
Sed01g2046 848 ProSitePatterns Serine/Threonine protein kinases active-site signature. 649 661 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g2046 848 Gene3D Phosphorylase Kinase; domain 1 485 603 - -
Sed01g2046 848 Gene3D Transferase(Phosphotransferase) domain 1 604 805 - -
Sed01g2046 848 CDD PAN_AP_plant 351 437 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2044 Sed-Chr1:15282753 Sed01g2046 Sed-Chr1:15305645 7.60E-59 dispersed
Sed01g2046 Sed-Chr1:15305645 Sed08g2318 Sed-Chr8:36558153 8.70E-299 dispersed
Sed11g0171 Sed-Chr11:1512227 Sed01g2046 Sed-Chr1:15305645 2.90E-96 dispersed
Sed14g1390 Sed-Chr14:22630549 Sed01g2046 Sed-Chr1:15305645 4.30E-112 dispersed
Sed01g2045 Sed-Chr1:15282753 Sed01g2046 Sed-Chr1:15305645 7.60E-59 tandem
Sed01g2046 Sed-Chr1:15305645 Sed01g2047 Sed-Chr1:15305645 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78645 PF07714 PK_Tyr_Ser-Thr 1.50E-47 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2046 - - - 0.0