Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2048 ATGTATCCAAATTTTTCATGTCTTCTTTCTGTGCTTCTTTCATTTTTATGTTTCTGTTCAAGATTAAGTTTTGGGCTTAGAGATACAATCACATCAACAAATTTCATCAAAGACCCTGCAACCATAATTTCCAATGATAGTTCCTTTGAATTGGGGTTCTTCACACCTCCCAACTCGACAAACCGATATGTCGGAATTTGGTTCAAGCAAATCTCTCCACAAACTATAGTGTGGGTGGCCAACAGAGACAACCCTCTCAAAGAAACTAATTCTGGGATCTTCACAATTTCTTCGGATGGGAATCTTGTCGTCTTGGACGGAAACCACACCGTTCTCTGGTCTTCAAATGTTTCTTCCTCTGCTACCAACACAAGTGCCCAGATTTTAGATTCTGGCAACCTTGTTTTGGTAGATAGTGCTTTCAATACGGTTATATGGGAGAGTTTCAAATACCCTTGTGACAAATTCTTGCCTTCAATGAAAATTATGACAAACACAAGAACTAAACAGAAGGTTGTACTTACCTCATGGAGCAATCCTTCTGATCCTTCCATTGGAAACTTCTCTGTGGGGCTGCATGTTCACAATCTTCCTGAAGCTGTTATTTGGAATGGCCATAACGCGTATTGGCGCTCTGGTCCGTGGAACGGTCGAAGTTTTATCGGAATACCCCTTATGGATCCTATTTACCTCTCTGGATATAACCTCGTAATTGAAGATCAAACTTACTCTCTTTCCGTCGTTAATTATGAGGCGAAAGGCTTTGCTTTCTTGTTTTTAAACTCACTGGGAAATTTGCAAGAAACATACTTTGATGGTGTTGGGAAGAAGCGTTTAATGCCTGATTGGTCGGCTCTAGAATCGCAGTGTGATTACTATGGTGCTTGTGGTGCATATGGGATCTGTAATTCAAAAGCCTCTCCTGTTTGTAATTGTTTAAAAGGGTTTAAACCAAAGCATGAACATGAATGGAATCAAGGAAATTGGAGGGGAGGATGCGTGAGAAAGAAGCAACTGCAATGTGAGAAGTCCAACAACACAAGCACTGAGGAACAAGATGGGTTTTTTCAATTGGAAATGGTTAAAATTCCTTTTTTTGCAGAGTGGCCTGATTCACTTGCTTCATTAGATGATTGTAGAGCCATGTGCTTGGGGAATTGTTCGTGTAAAGCCTATGCCTTTGATAATGGCATTCGTTGTATGCTTTGGAGTGGCGACTTAATCGATATACAAATGTTTGAGGCCGGTGGAGCTGATCTTTTCCTTCGATTAGCATATGCAGAATTGGATCGTACAAAAGATGTAAAAAGAACTATTATAGCCATAGTGCTACCAATAATTTTGATCATCTTCTTCATTGTGACATATATTTGGTGCAGATGGAAGACTCGCAAACAAGAAAAGAGCAGGTCAACTATGACTTCTAAGGAAAAGGAGAAGATTTGGAAGTTGAGAAGGGAAGATATGATTGAAGATGAAGTTAAATTGGAGGAGCTGCCTCTTTATGATTTTGAAAAGTTGGCAACTGCAACAAACAACTTTGAGTTATGTAACAAGTTAGGACAGGGTGGCTTTGGTCCAGTATACAAAGGAAAATTGTTAAATGGACAAGAAATAGCAGTAAAGAGATTATTAAGAGTCTCTAATCAAGGATATGAAGAATTTATAAATGAAGTGAAGGTCATTTCTAAACTACAACATAGAAATCTTGTGCAGCTTTTTGGATGTTGCGTGGAAGGAGAAGAAAGAATGCTAGTCTATGAATTCATGCCTAATGGAAGTTTGGATTCCATTATTTTTGATTCAACCAAAAGAAAAGGTTTAGATTGGCAAAAAAGATTCAACATTATCAAAGGAATTGCTCGAGGGCTCCTATATCTTCATAGAGACTCGAGGCTAAAAATCATTCATAGAGACCTCAAAGCTGGTAATGTTTTACTAGACAGAGATTTTAATCCCAAAATTTCAGATTTTGGTACTGCTAGAGTTTATTACAGCAATCAAGCTCAAGCAAAAACTGCAAGGATTGTCGGCACTTTTGGTTACATGTCACCCGAATATGTGATGAATGGTCAATTCTCAGAAAAATCAGATGTCTTTAGCTTTGGCGTTTTGTTACTTGAAATTATTAGTGGAAGAAAAAACACAAGTTTTTATGGCAGCGAACATTCCTTGAGCCTTCTAGGATTTGCATGGAAACTATGGATTGAGAATAGTTCTCTAGCTTTGATAGATGAAACCATGTTTGAATCCCATTATCAAACTGAAGTTTCAAGGTGCATTCATGTGGGACTTTTGTATACCATAACATCAAAAACTTTCATCAAAGATCCAGCAACTATAATCTCAAACAACAGTTCCTTCGAGTTGGGTTTCTTCACACCTCTAAATTCCACGGCACGATATGTCGGAATCTGGTTCAAGAACATTTCTCCACAATCTATAGTATGGGTGGCTAATTCAAACAACCCGCTCAATGACACTTCTGGGATTTTCACAATTTCCAATGATGGAAATCTTGTCGTGTTGGATCGAAACGGAGCAGTCCTCTGGTCTTCAAATGTTTCTTCTTCATCATCTACAACAAATTCAACCACAATCGCCCGAATTTTAGATTCAGGAAATCTTGTTTTGGAAGATACTGTTTCTGGCAATGTTATATGGGAGAGTTTCAAACACCCATCTGATAAATTTCTGACATTTATGAAACTCGTCACAAACAGAGCAACTAAAGAGAATGTCAACATCACATCTTGGAACAATCCTTCCAATCCATCATCTGGGAATTTTTCATTTACGTTGGAAATTCACAACATTCCTGAAATGGTTGTTTGGAATGGTGTGAATCTGTATTGGCGATCCGGTCCATGGAACGGTCGGTCTTTCGTCGGAATACACGACATGGACTCTGTTTATCTCTCTGGATTCAACTTAATAATCGACGACAAAACTTACACTCTCTCAATTCCTCACAGCTTCAAACTCCAAGAATTTGCTTATTTGTTCTTAACTTCGCAAGGGAACTTGGAGGATATTTTATGGGATGATCAAACCAAGCAATGGAGTGTTAGTTGGTCGGCTCTGAAAACAGAGTGTGATTACTACGGCACTTGTGGGGAATTTGGGATTTGTGATCCAAAAACGTCTCCTTTCTGCACGTGTTTAAGAGGGTTCAAGCCAAAGAATGAAGAGGAATGGAAGAGAGGAAATTGGAGTAATGGGTGTGTTAGAAAGACGCCATTGAAATGTGAAGAAATGAAGAATTCTAGTGAGAAAGAAGATGGGTTTTTGAAGATGGAAATGGTTAAAGTGCCATATTTTGCAGAATGGTCTGTTGTTTCTCTAACAACAAATAATTGCAGAGATGAATGCTTGAGTGATTGTTCGTGTAATGCTTATGCATTTGAAGATGGTATTCGTTGTATGCTTTGGAGAAGAGAGGGCTTGATTGATATTCAAAAGTTTGAGATTGGTGGAAAGAAAGGAATTATTATAGGAACCGTGCTACCAGCTACTTTTATCTTCTTCATCATTGCCATATCTTTTTGGTGGAAATGGAGGAAGACTCACAAACAAGAAAAGAAGGAAAAAGAAAAGATTTTGAAACTGACAAGGGAGGATGATATGAATGAGGATGGAATCAAACTTGAAGAGTTACCTTTTTATGATTATGAGAAGCTTGCAATTGCAACCAACAATTTTGATCTGAGCAACAAACTTGGGCAAGGTGGCTTTGGTCCAGTATACAAGGGAAAATTATTAAATGGACAAGAAATAGCCGTAAAGAGGCTTTCAAGAACCTCCAACCAAGGGTATGAAGAATTTATAAATGAAGTGAAGGTCATTTCTAAACTACAACATAGAAATCTTGTACGTCTATTTGGTTGCTGCATCCAAGGAGAAGAGAAGATGTTGATTTATGAGTACATGCCTCACCTAAGTTTGGATGCCTTAATCTTTGGCTCCCACAAACAAGGGCTCTTGGACTGGAGAAAGAGATTTATTATTATCGAAGGAATTGCTCGAGGCCTTCTTTATCTTCATAGGGATTCGAGATTAAAAATCATTCATAGAGATCTCAAGGCAAGTAATATTTTGATAGATAAAGACTTGAATCCTAAAATTTCAGATTTTGGCATGGCAAGAATTTTTTATGGCAATGAAGCTCAAGCGCGTACATTAAGAATTGCTGGAACTTATGGGTATATGTCTCCTGAATATGCAATGCAAGGCAAATTTTCAGAAAAATCGGATATATTTAGCTTCGGAGTTCTATTGCTTGAAATAGTCAGCGGAAAAAGAAATACAGAGTTTCATCACTATGAATATGACATCAATTTACTCGGATTTGTATGGAAGTTGTGGAAGGAAGGCAATCTTATTCCTTTGATTGAGCCAACAATATATGAAATGTGCTACCAACTAGAGATTTTGAGATGCATTCATGTGGGGCTCTTATGTGTTCAAGAATTTGTAAATGATAGGCCAAATATTTCCACCATCATTTCAATGCTTAACAGTGATGTTGATCTTCCATCTCCAAAGCAGCCTGGCTTTGTTGGCACACAATCTTCTCAACAAAATTTAGATAAATTTTCTGCAAATAATGTTACATGTACCACAATTATAGCTAGATAG 4638 37.84 MYPNFSCLLSVLLSFLCFCSRLSFGLRDTITSTNFIKDPATIISNDSSFELGFFTPPNSTNRYVGIWFKQISPQTIVWVANRDNPLKETNSGIFTISSDGNLVVLDGNHTVLWSSNVSSSATNTSAQILDSGNLVLVDSAFNTVIWESFKYPCDKFLPSMKIMTNTRTKQKVVLTSWSNPSDPSIGNFSVGLHVHNLPEAVIWNGHNAYWRSGPWNGRSFIGIPLMDPIYLSGYNLVIEDQTYSLSVVNYEAKGFAFLFLNSLGNLQETYFDGVGKKRLMPDWSALESQCDYYGACGAYGICNSKASPVCNCLKGFKPKHEHEWNQGNWRGGCVRKKQLQCEKSNNTSTEEQDGFFQLEMVKIPFFAEWPDSLASLDDCRAMCLGNCSCKAYAFDNGIRCMLWSGDLIDIQMFEAGGADLFLRLAYAELDRTKDVKRTIIAIVLPIILIIFFIVTYIWCRWKTRKQEKSRSTMTSKEKEKIWKLRREDMIEDEVKLEELPLYDFEKLATATNNFELCNKLGQGGFGPVYKGKLLNGQEIAVKRLLRVSNQGYEEFINEVKVISKLQHRNLVQLFGCCVEGEERMLVYEFMPNGSLDSIIFDSTKRKGLDWQKRFNIIKGIARGLLYLHRDSRLKIIHRDLKAGNVLLDRDFNPKISDFGTARVYYSNQAQAKTARIVGTFGYMSPEYVMNGQFSEKSDVFSFGVLLLEIISGRKNTSFYGSEHSLSLLGFAWKLWIENSSLALIDETMFESHYQTEVSRCIHVGLLYTITSKTFIKDPATIISNNSSFELGFFTPLNSTARYVGIWFKNISPQSIVWVANSNNPLNDTSGIFTISNDGNLVVLDRNGAVLWSSNVSSSSSTTNSTTIARILDSGNLVLEDTVSGNVIWESFKHPSDKFLTFMKLVTNRATKENVNITSWNNPSNPSSGNFSFTLEIHNIPEMVVWNGVNLYWRSGPWNGRSFVGIHDMDSVYLSGFNLIIDDKTYTLSIPHSFKLQEFAYLFLTSQGNLEDILWDDQTKQWSVSWSALKTECDYYGTCGEFGICDPKTSPFCTCLRGFKPKNEEEWKRGNWSNGCVRKTPLKCEEMKNSSEKEDGFLKMEMVKVPYFAEWSVVSLTTNNCRDECLSDCSCNAYAFEDGIRCMLWRREGLIDIQKFEIGGKKGIIIGTVLPATFIFFIIAISFWWKWRKTHKQEKKEKEKILKLTREDDMNEDGIKLEELPFYDYEKLAIATNNFDLSNKLGQGGFGPVYKGKLLNGQEIAVKRLSRTSNQGYEEFINEVKVISKLQHRNLVRLFGCCIQGEEKMLIYEYMPHLSLDALIFGSHKQGLLDWRKRFIIIEGIARGLLYLHRDSRLKIIHRDLKASNILIDKDLNPKISDFGMARIFYGNEAQARTLRIAGTYGYMSPEYAMQGKFSEKSDIFSFGVLLLEIVSGKRNTEFHHYEYDINLLGFVWKLWKEGNLIPLIEPTIYEMCYQLEILRCIHVGLLCVQEFVNDRPNISTIISMLNSDVDLPSPKQPGFVGTQSSQQNLDKFSANNVTCTTIIAR 1545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15317650 15343198 + Sed0022293.1 Sed01g2048 701352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2048 1545 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 765 891 - -
Sed01g2048 1545 SUPERFAMILY alpha-D-mannose-specific plant lectins 75 217 IPR036426 -
Sed01g2048 1545 Pfam S-locus glycoprotein domain 210 319 IPR000858 GO:0048544(InterPro)
Sed01g2048 1545 Pfam S-locus glycoprotein domain 952 1062 IPR000858 GO:0048544(InterPro)
Sed01g2048 1545 CDD PAN_AP_plant 1079 1155 - -
Sed01g2048 1545 Pfam D-mannose binding lectin 75 177 IPR001480 -
Sed01g2048 1545 Pfam D-mannose binding lectin 815 919 IPR001480 -
Sed01g2048 1545 ProSiteProfiles Protein kinase domain profile. 1234 1519 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g2048 1545 SMART blect_4 33 152 IPR001480 -
Sed01g2048 1545 SMART blect_4 772 894 IPR001480 -
Sed01g2048 1545 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 477 589 - -
Sed01g2048 1545 Pfam Protein tyrosine and serine/threonine kinase 1236 1435 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g2048 1545 Pfam Protein tyrosine and serine/threonine kinase 515 714 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g2048 1545 SUPERFAMILY Protein kinase-like (PK-like) 495 762 IPR011009 -
Sed01g2048 1545 ProSiteProfiles PAN/Apple domain profile. 341 425 IPR003609 -
Sed01g2048 1545 SMART serkin_6 1234 1520 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g2048 1545 SMART serkin_6 514 793 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g2048 1545 CDD B_lectin 775 894 IPR001480 -
Sed01g2048 1545 ProSiteProfiles Bulb-type lectin domain profile. 27 149 IPR001480 -
Sed01g2048 1545 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 590 782 - -
Sed01g2048 1545 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 770 1518 - -
Sed01g2048 1545 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 25 149 - -
Sed01g2048 1545 CDD PAN_AP_plant 338 425 - -
Sed01g2048 1545 SUPERFAMILY alpha-D-mannose-specific plant lectins 814 959 IPR036426 -
Sed01g2048 1545 CDD B_lectin 33 152 IPR001480 -
Sed01g2048 1545 SMART ntp_6 1091 1167 IPR003609 -
Sed01g2048 1545 SMART ntp_6 350 424 IPR003609 -
Sed01g2048 1545 FunFam receptor-like serine/threonine-protein kinase SD1-8 1206 1309 - -
Sed01g2048 1545 ProSiteProfiles Bulb-type lectin domain profile. 766 891 IPR001480 -
Sed01g2048 1545 Pfam PAN-like domain 349 410 IPR003609 -
Sed01g2048 1545 Pfam PAN-like domain 1090 1147 IPR003609 -
Sed01g2048 1545 Gene3D - 23 149 IPR036426 -
Sed01g2048 1545 Gene3D - 770 892 IPR036426 -
Sed01g2048 1545 ProSiteProfiles PAN/Apple domain profile. 1083 1168 IPR003609 -
Sed01g2048 1545 FunFam Os04g0303100 protein 805 951 - -
Sed01g2048 1545 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1310 1512 - -
Sed01g2048 1545 FunFam Os04g0303100 protein 66 209 - -
Sed01g2048 1545 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1355 1367 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g2048 1545 ProSiteProfiles Protein kinase domain profile. 514 793 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g2048 1545 Gene3D Transferase(Phosphotransferase) domain 1 1310 1513 - -
Sed01g2048 1545 Gene3D Transferase(Phosphotransferase) domain 1 590 769 - -
Sed01g2048 1545 Gene3D Phosphorylase Kinase; domain 1 489 589 - -
Sed01g2048 1545 Gene3D Phosphorylase Kinase; domain 1 1209 1309 - -
Sed01g2048 1545 SUPERFAMILY Protein kinase-like (PK-like) 1219 1516 IPR011009 -
Sed01g2048 1545 ProSitePatterns Serine/Threonine protein kinases active-site signature. 635 647 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g2048 1545 CDD STKc_IRAK 1240 1506 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2042 Sed-Chr1:15278381 Sed01g2048 Sed-Chr1:15317650 2.30E-277 dispersed
Sed01g2048 Sed-Chr1:15317650 Sed08g2318 Sed-Chr8:36558153 8.30E-308 dispersed
Sed05g1984 Sed-Chr5:33175999 Sed01g2048 Sed-Chr1:15317650 6.40E-32 dispersed
Sed01g2047 Sed-Chr1:15305645 Sed01g2048 Sed-Chr1:15317650 4.50E-245 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78647 PF07714 PK_Tyr_Ser-Thr 2.40E-46 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2048 - - - 0.0