Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g2056 | ATGCCGACTCACTACAATTTCTTTACCAGAGTTTCCAGACTTTTCAACGACCATCCTTCGCTTTCGAAGCTTCTTGTTCTTGTCAGCGTTAGTGGGGGAAGCCTTGTAGCATACGCTGATGCTAGTCCAACCAATGGTGTACCCAGTATTGCATCTAAACCTGATGTAGATAAGAAAAAGAAGGTGGTAGTGCTTGGAACTGGTTGGGCCGGAACTAGTTTCTTGAAGAATATTAAAGATCCCTCCTATGAGGTTCAAGTGATATCGCCTCGTAATTACTTTGCATTCACCCCATTATTGCCAAGTGTTACATGTGGTACAGTCGAAGCTCGTAGCGTTGTTGAACCGATTCGCAACATTGTGAGGAAGAAAAGGGTAGACATCAAATTCAATGAAGCGGAATGCTACAAGATTGATGCTGCAAATAAAAAACTGTATTGTAAATCTAATGAAAACAACAATCTGAATGGGAAAAAGGAATTCGTTGTGGACTACGACTACCTAGTCATAGCCGTGGGAGCACAAGTGAATACATTCAATACTCCTGGCGTTGTAGAGAATTGTCATTTCTTGAAGGAAGTAGAAGATGCTCAGAGAATTCGAAGAACTGTAATTGATTGCTTTGAGAGGGCAAGTCTGCCTACCCTGAATGAAGAAGATAGAAAGAAAATTCTTCATTTTGCTGTTGTTGGTGGTGGCCCCACTGGTGTGGAATTTGCAGCTGAACTTCATGATTTTGTTAATGAAGACTTGGTCAAATTATATCCTGGACTTGAAGATTTTGTAAAAATTACTCTTCTTGAGGCAGGAGATCATATCTTGAACATGTTTGACAAAAGAATTACAACTTTTGCTGAAGAAAAATTCCGTAGAGATGGTATTGATGTTAAGACGGGATCAATGGTAATCAAGGTGACTGATAAAGAGATTTCTACTAAAGAAATGAAGAGTGGAGAAATATCTTCTATGCCTTATGGAATGACAGTATGGTCAACTGGTATAGGAACTCGTCCTATCATAAGAAATTTTATGACACAGATTGGTCAGGCTAACAGACGTGCTCTGGCAACTGATGAATGGCTTCGTGTTGAGGGGTGTGACAATGTATATGCACTTGGTGACTGCGCTACTATAAATCAGCGAAGAGTCATGGAAGATATTTCAGCAATTTTTAGCAAGGCAGACAAGGACAATTCTGGGACTCTTACAGTAAAAGAGTTCAAAGAAGTAATTGATGACATATGTGAAAGATACCCCCAAGTGGAGCTATATTTGAAGAATAAGAAGATGAATGACATTGTTGCTCTTTTGAAAGGATCCAAAGAGGATGTGGCAAAGGAGTCTATTGAATTAAACATTGAAGAGTTTAAATCAGCTCTTTCTCAAGTTGATTCTCAAATGAAGAACCTTCCAGCTACTGCACAGGTGGCTGCCCAACAAGGTGCATATCTTGCCCATTGTTTTAACCGCATGGAAGAGTGCGAAGAGAGTCCTGAAGGTCCTCTGAGGTTTAGGGGTACAGGACGCCACCGTTTCCGTCCCTTTAGGTACAAACATCTTGGACAATTCGCGCCGTTGGGAGGAGAACAAACGGCTGCACAACTTCCTGGGGATTGGGTGTCCATTGGCCACAGCTCTCAGTGGCTCTGGTACTCTGTCTATGCAAGTAAGCAAGTTAGTTGGCGGACAAGAGCATTGGTGGTTACAGATTGGACAAGACGTTTCATTTTCGGGAGAGATTCGAGTCGCATATGA | 1755 | 41.6 | MPTHYNFFTRVSRLFNDHPSLSKLLVLVSVSGGSLVAYADASPTNGVPSIASKPDVDKKKKVVVLGTGWAGTSFLKNIKDPSYEVQVISPRNYFAFTPLLPSVTCGTVEARSVVEPIRNIVRKKRVDIKFNEAECYKIDAANKKLYCKSNENNNLNGKKEFVVDYDYLVIAVGAQVNTFNTPGVVENCHFLKEVEDAQRIRRTVIDCFERASLPTLNEEDRKKILHFAVVGGGPTGVEFAAELHDFVNEDLVKLYPGLEDFVKITLLEAGDHILNMFDKRITTFAEEKFRRDGIDVKTGSMVIKVTDKEISTKEMKSGEISSMPYGMTVWSTGIGTRPIIRNFMTQIGQANRRALATDEWLRVEGCDNVYALGDCATINQRRVMEDISAIFSKADKDNSGTLTVKEFKEVIDDICERYPQVELYLKNKKMNDIVALLKGSKEDVAKESIELNIEEFKSALSQVDSQMKNLPATAQVAAQQGAYLAHCFNRMEECEESPEGPLRFRGTGRHRFRPFRYKHLGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYSVYASKQVSWRTRALVVTDWTRRFIFGRDSSRI | 584 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 15396139 | 15401642 | - | Sed0015030.2 | Sed01g2056 | 701360 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g2056 | 584 | PANTHER | NADH DEHYDROGENASE | 47 | 584 | IPR045024 | GO:0003954(InterPro)|GO:0006116(InterPro) | |
Sed01g2056 | 584 | ProSitePatterns | EF-hand calcium-binding domain. | 395 | 407 | IPR018247 | - | |
Sed01g2056 | 584 | SUPERFAMILY | EF-hand | 375 | 470 | IPR011992 | - | |
Sed01g2056 | 584 | Pfam | NDH2 C-terminal domain | 519 | 580 | IPR054585 | - | |
Sed01g2056 | 584 | FunFam | External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial | 51 | 411 | - | - | |
Sed01g2056 | 584 | Coils | Coil | 446 | 466 | - | - | |
Sed01g2056 | 584 | ProSiteProfiles | EF-hand calcium-binding domain profile. | 382 | 417 | IPR002048 | GO:0005509(InterPro) | |
Sed01g2056 | 584 | Gene3D | - | 51 | 411 | - | - | |
Sed01g2056 | 584 | Gene3D | - | 427 | 583 | - | - | |
Sed01g2056 | 584 | SMART | efh_1 | 386 | 414 | IPR002048 | GO:0005509(InterPro) | |
Sed01g2056 | 584 | Pfam | Pyridine nucleotide-disulphide oxidoreductase | 60 | 383 | IPR023753 | GO:0016491(InterPro) | |
Sed01g2056 | 584 | FunFam | External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial | 428 | 583 | - | - | |
Sed01g2056 | 584 | SUPERFAMILY | FAD/NAD(P)-binding domain | 59 | 278 | IPR036188 | - | |
Sed01g2056 | 584 | SUPERFAMILY | FAD/NAD(P)-binding domain | 218 | 379 | IPR036188 | - | |
Sed01g2056 | 584 | PRINTS | FAD-dependent pyridine nucleotide reductase signature | 226 | 244 | - | - | |
Sed01g2056 | 584 | PRINTS | FAD-dependent pyridine nucleotide reductase signature | 62 | 81 | - | - | |
Sed01g2056 | 584 | PRINTS | FAD-dependent pyridine nucleotide reductase signature | 165 | 183 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g2056 | Sed-Chr1:15396139 | Sed08g2309 | Sed-Chr8:36489020 | 7.80E-307 | dispersed | |
Sed01g2055 | Sed-Chr1:15395884 | Sed01g2056 | Sed-Chr1:15396139 | 0.00E+00 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g2056 | K03885 | - | csv:101204145 | 1082.4 |