Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2056 ATGCCGACTCACTACAATTTCTTTACCAGAGTTTCCAGACTTTTCAACGACCATCCTTCGCTTTCGAAGCTTCTTGTTCTTGTCAGCGTTAGTGGGGGAAGCCTTGTAGCATACGCTGATGCTAGTCCAACCAATGGTGTACCCAGTATTGCATCTAAACCTGATGTAGATAAGAAAAAGAAGGTGGTAGTGCTTGGAACTGGTTGGGCCGGAACTAGTTTCTTGAAGAATATTAAAGATCCCTCCTATGAGGTTCAAGTGATATCGCCTCGTAATTACTTTGCATTCACCCCATTATTGCCAAGTGTTACATGTGGTACAGTCGAAGCTCGTAGCGTTGTTGAACCGATTCGCAACATTGTGAGGAAGAAAAGGGTAGACATCAAATTCAATGAAGCGGAATGCTACAAGATTGATGCTGCAAATAAAAAACTGTATTGTAAATCTAATGAAAACAACAATCTGAATGGGAAAAAGGAATTCGTTGTGGACTACGACTACCTAGTCATAGCCGTGGGAGCACAAGTGAATACATTCAATACTCCTGGCGTTGTAGAGAATTGTCATTTCTTGAAGGAAGTAGAAGATGCTCAGAGAATTCGAAGAACTGTAATTGATTGCTTTGAGAGGGCAAGTCTGCCTACCCTGAATGAAGAAGATAGAAAGAAAATTCTTCATTTTGCTGTTGTTGGTGGTGGCCCCACTGGTGTGGAATTTGCAGCTGAACTTCATGATTTTGTTAATGAAGACTTGGTCAAATTATATCCTGGACTTGAAGATTTTGTAAAAATTACTCTTCTTGAGGCAGGAGATCATATCTTGAACATGTTTGACAAAAGAATTACAACTTTTGCTGAAGAAAAATTCCGTAGAGATGGTATTGATGTTAAGACGGGATCAATGGTAATCAAGGTGACTGATAAAGAGATTTCTACTAAAGAAATGAAGAGTGGAGAAATATCTTCTATGCCTTATGGAATGACAGTATGGTCAACTGGTATAGGAACTCGTCCTATCATAAGAAATTTTATGACACAGATTGGTCAGGCTAACAGACGTGCTCTGGCAACTGATGAATGGCTTCGTGTTGAGGGGTGTGACAATGTATATGCACTTGGTGACTGCGCTACTATAAATCAGCGAAGAGTCATGGAAGATATTTCAGCAATTTTTAGCAAGGCAGACAAGGACAATTCTGGGACTCTTACAGTAAAAGAGTTCAAAGAAGTAATTGATGACATATGTGAAAGATACCCCCAAGTGGAGCTATATTTGAAGAATAAGAAGATGAATGACATTGTTGCTCTTTTGAAAGGATCCAAAGAGGATGTGGCAAAGGAGTCTATTGAATTAAACATTGAAGAGTTTAAATCAGCTCTTTCTCAAGTTGATTCTCAAATGAAGAACCTTCCAGCTACTGCACAGGTGGCTGCCCAACAAGGTGCATATCTTGCCCATTGTTTTAACCGCATGGAAGAGTGCGAAGAGAGTCCTGAAGGTCCTCTGAGGTTTAGGGGTACAGGACGCCACCGTTTCCGTCCCTTTAGGTACAAACATCTTGGACAATTCGCGCCGTTGGGAGGAGAACAAACGGCTGCACAACTTCCTGGGGATTGGGTGTCCATTGGCCACAGCTCTCAGTGGCTCTGGTACTCTGTCTATGCAAGTAAGCAAGTTAGTTGGCGGACAAGAGCATTGGTGGTTACAGATTGGACAAGACGTTTCATTTTCGGGAGAGATTCGAGTCGCATATGA 1755 41.6 MPTHYNFFTRVSRLFNDHPSLSKLLVLVSVSGGSLVAYADASPTNGVPSIASKPDVDKKKKVVVLGTGWAGTSFLKNIKDPSYEVQVISPRNYFAFTPLLPSVTCGTVEARSVVEPIRNIVRKKRVDIKFNEAECYKIDAANKKLYCKSNENNNLNGKKEFVVDYDYLVIAVGAQVNTFNTPGVVENCHFLKEVEDAQRIRRTVIDCFERASLPTLNEEDRKKILHFAVVGGGPTGVEFAAELHDFVNEDLVKLYPGLEDFVKITLLEAGDHILNMFDKRITTFAEEKFRRDGIDVKTGSMVIKVTDKEISTKEMKSGEISSMPYGMTVWSTGIGTRPIIRNFMTQIGQANRRALATDEWLRVEGCDNVYALGDCATINQRRVMEDISAIFSKADKDNSGTLTVKEFKEVIDDICERYPQVELYLKNKKMNDIVALLKGSKEDVAKESIELNIEEFKSALSQVDSQMKNLPATAQVAAQQGAYLAHCFNRMEECEESPEGPLRFRGTGRHRFRPFRYKHLGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYSVYASKQVSWRTRALVVTDWTRRFIFGRDSSRI 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15396139 15401642 - Sed0015030.2 Sed01g2056 701360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2056 584 PANTHER NADH DEHYDROGENASE 47 584 IPR045024 GO:0003954(InterPro)|GO:0006116(InterPro)
Sed01g2056 584 ProSitePatterns EF-hand calcium-binding domain. 395 407 IPR018247 -
Sed01g2056 584 SUPERFAMILY EF-hand 375 470 IPR011992 -
Sed01g2056 584 Pfam NDH2 C-terminal domain 519 580 IPR054585 -
Sed01g2056 584 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 51 411 - -
Sed01g2056 584 Coils Coil 446 466 - -
Sed01g2056 584 ProSiteProfiles EF-hand calcium-binding domain profile. 382 417 IPR002048 GO:0005509(InterPro)
Sed01g2056 584 Gene3D - 51 411 - -
Sed01g2056 584 Gene3D - 427 583 - -
Sed01g2056 584 SMART efh_1 386 414 IPR002048 GO:0005509(InterPro)
Sed01g2056 584 Pfam Pyridine nucleotide-disulphide oxidoreductase 60 383 IPR023753 GO:0016491(InterPro)
Sed01g2056 584 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 428 583 - -
Sed01g2056 584 SUPERFAMILY FAD/NAD(P)-binding domain 59 278 IPR036188 -
Sed01g2056 584 SUPERFAMILY FAD/NAD(P)-binding domain 218 379 IPR036188 -
Sed01g2056 584 PRINTS FAD-dependent pyridine nucleotide reductase signature 226 244 - -
Sed01g2056 584 PRINTS FAD-dependent pyridine nucleotide reductase signature 62 81 - -
Sed01g2056 584 PRINTS FAD-dependent pyridine nucleotide reductase signature 165 183 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2056 Sed-Chr1:15396139 Sed08g2309 Sed-Chr8:36489020 7.80E-307 dispersed
Sed01g2055 Sed-Chr1:15395884 Sed01g2056 Sed-Chr1:15396139 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2056 K03885 - csv:101204145 1082.4