Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2057 ATGAACGACTTATTCTCGAACTCGTTCAAGAAGTACACGGATCTGAAACAGCAGGCTTATCTGGACAGCATGGAAGCTGGGAAAGAGAGTGTGAATTTGGACACGTTTTTTGAGGATGTTGAGAAGGTTAAGGATGACATGAAACAGGTGGAGAGCTTGTACAAGACATTGCAGCAGGCCAATGAGGAGTGCAAGATTGTGCACAGTGCCAAGACCATGAAGGAGCTCAGGGCTAGAATGGAGGCTGATGTTTCCCTGGTTCTCAAGAAAGTCAAATTGGTTAAAGGGAAGATCGAGGCTCTCGACCGTGCCAACGCTGCTCATAGAAGCCTTCCTGGCTGCGGCCCTGGCTCCTCTGCTGACCGGACTCGAACCTCCGTCGTCAGTGGTTTGGGCAAGAAGCTTAAGGATATCATGGATGATTTTCAAGGATTGAGATCTCGAATGAATGCCGAATACAAGGAAACCGTCGAGCGAAGGTACTTCACAGTGACAGGGCAGAAGGCAGACGAAGAGACAATAGAGAATTTGATATCAAGCGGGGAAAGTGAGAGTTTCTTACAAAAGGCAATACAAGAACAGGCCGGGAGAGGTCAAATTATGGACACCATTTCAGAGATTCAAGAGCGACACGACGCCGTGAAGGAGATCGAGAAGAATTTGCTTGAGCTACACCAGATATTCTTGGACATGGCGGCTCTGGTCGAGGCTCAAGGCCACCAGCTCAACGACATCGAAAGCCACGTGGCTCATGCGAGTTCCTTCGTGAGAAGGGGAACCGAGCAACTTCAGGAAGCTCGAGAGTATCAGAAAAGCTCTAGGAAATGGACTTGCTATGCCATCCTATTGGGTATTGTTCTCATTGTCCTTCTTCTGTTTCCACTCTTCATTAACATTTTGCCGCATTTGTTGTAG 915 48.09 MNDLFSNSFKKYTDLKQQAYLDSMEAGKESVNLDTFFEDVEKVKDDMKQVESLYKTLQQANEECKIVHSAKTMKELRARMEADVSLVLKKVKLVKGKIEALDRANAAHRSLPGCGPGSSADRTRTSVVSGLGKKLKDIMDDFQGLRSRMNAEYKETVERRYFTVTGQKADEETIENLISSGESESFLQKAIQEQAGRGQIMDTISEIQERHDAVKEIEKNLLELHQIFLDMAALVEAQGHQLNDIESHVAHASSFVRRGTEQLQEAREYQKSSRKWTCYAILLGIVLIVLLLFPLFINILPHLL 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15405292 15407105 + Sed0012593.1 Sed01g2057 701361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2057 304 CDD SynN 33 190 IPR006011 GO:0016020(InterPro)
Sed01g2057 304 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 204 266 IPR000727 -
Sed01g2057 304 Coils Coil 40 63 - -
Sed01g2057 304 SMART SynN_4 28 154 IPR006011 GO:0016020(InterPro)
Sed01g2057 304 SMART tSNARE_6 199 266 IPR000727 -
Sed01g2057 304 ProSitePatterns Syntaxin / epimorphin family signature. 210 249 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Sed01g2057 304 Gene3D - 33 160 - -
Sed01g2057 304 FunFam Syntaxin 132 197 297 - -
Sed01g2057 304 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 30 160 - -
Sed01g2057 304 Gene3D - 197 297 - -
Sed01g2057 304 PANTHER SYNTAXIN 36 288 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Sed01g2057 304 Pfam Syntaxin 36 239 IPR006011 GO:0016020(InterPro)
Sed01g2057 304 SUPERFAMILY t-snare proteins 32 259 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Sed01g2057 304 CDD SNARE_syntaxin1-like 203 265 - -
Sed01g2057 304 Pfam SNARE domain 241 292 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2057 Sed-Chr1:15405292 Sed12g1336 Sed-Chr12:10205518 5.30E-89 dispersed
Sed01g2057 Sed-Chr1:15405292 Sed08g2301 Sed-Chr8:36458517 4.00E-145 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2057 K08486 - csv:101217140 505.368