Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2092 ATGTCAATTTTACTGTGTAGCATTCTTTACAATCGTGGCCTTTATCCGGAAGAAAGTTTTGCAAGGGTGAAGAAATATGGACTTCCTATGTTGCTTACTCAAGATGAAGGTGTTAAGACCTTCATTTCTAATCTAACTGCTCAGCTTTCTGAATGGCTGGAAGCTGGGAAGTTACAGAGGATTGTGCTTGTCATAATGAGCAAAGCCAACAATGAGGTCCTTGAGAGGTGGAACTTTAGAATTGAAACTGATGGAGAGGTTGTTGAGCAAGGTGTTTTGAGGGAAAAGAGTGATAAAGAAATAATGAGAGAGATTCGAGCAATTATGAGACAGATTGCTTCAAGTATCACTTACTTGCCCTGCCTAGATGAACCCTGTGTATTTGATGTGTTAGCATATACCGATAAAGATCTTGCAGTTCCATTTACTTGGATCGAGAGTGACCCGAAACTGATTGCTAATCCCCAAATGGTGAAGCTGCATTCTTTTGATACCAAGGTGAGGGGAATATCAAACTTATTTCTCCAACTCATTTTGATTCACTGA 546 39.74 MSILLCSILYNRGLYPEESFARVKKYGLPMLLTQDEGVKTFISNLTAQLSEWLEAGKLQRIVLVIMSKANNEVLERWNFRIETDGEVVEQGVLREKSDKEIMREIRAIMRQIASSITYLPCLDEPCVFDVLAYTDKDLAVPFTWIESDPKLIANPQMVKLHSFDTKVRGISNLFLQLILIH 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15634446 15636989 + Sed0021695.6 Sed01g2092 701396

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2092 181 Gene3D HORMA domain 1 174 IPR036570 -
Sed01g2092 181 SUPERFAMILY The spindle assembly checkpoint protein mad2 4 173 IPR036570 -
Sed01g2092 181 PANTHER MITOTIC SPINDLE ASSEMBLY CHECKPOINT PROTEIN MAD2 5 171 IPR045091 GO:0000776(PANTHER)|GO:0005654(PANTHER)|GO:0005737(PANTHER)|GO:0007094(PANTHER)
Sed01g2092 181 ProSiteProfiles HORMA domain profile. 1 174 IPR003511 -
Sed01g2092 181 Pfam HORMA domain 3 166 IPR003511 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2092 K02537 - - csv:101208371 315.079
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2092 Sed-Chr1:15634446 Sed06g1725 Sed-Chr6:41932773 8.00E-85 dispersed
Sed01g2091 Sed-Chr1:15634446 Sed01g2092 Sed-Chr1:15634446 1.50E-91 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1140 . . . . . Bpe10g00776 . Bma15g00245 Cmo04g01909 Cmo18g00709 . Cma18g00721 . Car18g00668 Sed01g2092 Cpe09g00567 Cpe01g01597 Bhi07g01866 Tan04g0099 Cmetu10g1838 Lac13g0091 Hepe10g1545 . . Cla05g02632 Cam05g2826 Cec05g2862 Cco05g2894 Clacu05g2830 Cmu05g2677 Cre05g2794 . Cone19ag1106 . . Lsi04g00651 . . Cme10g00631 Blo06g00820 . . . . . . . . . . Cma04g01813 . Car04g01825 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004339 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 7 2 1 43