Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2111 ATGGAAGAAGATTCTAATTCTTGGTTAAGGAGAACAAATTTTTCTCACACAATATGTTACCGTTTAGAGTCCTTACAATTAGGTTCCTTTCCTGTCAGCACTCAGCCCCCACTCAAGTCAGATGTGCAACAATCAAAAGATGTTTCAGCTTCTTCTCATCATAGATCTGCCATCCCTTGTAACTTACCTGTTGAGAAGGTTCATGTTTTCAACAAGCAAAGGTCTCTGTCTCCGCCTTCCCAAACTACACTCTCGGGGGCGTTTAAGGAGGCTCGTTCCGATCAGAAGCGGTTTTTGACTCCACAACCTCAGAGGAGAGAGCACAAAAGAAAGGATAAAAGGGTATTGAGTAAAGAAGCTAAGGTGCACAATTCCTCAAAGGAAGAGAAAAGAAGAAACGTTTTGAGGCATTTTGCTTCTCTTAAAGGCAATGAGATATCCAAGTTCAAGGAGTCTTCTTGGACAAAGTTTTTTGATAATAGTGGAGGGAAGGTCGCTGCGGTTGAAGCTTTTAATGAATTTTCTGTTGATATGTCCAAGTTGTTTTTTGGGACTAAATTTGCTTATGGAGCTCATAGTCGGCTTTACCATGGAGAGTACTATGGTAAAGATGTTGCTGTTAAGATCATCGATTTGCCCGAGGACGACGAAAATGAAGATCTTGCAGATCGCTTAACAAAGCAGTTTAGTAGGGAAGTAACCCTTTTGTCTCGGCTTCACCATCCCAATGTAATTAAGTTGATATCAGCTTGTAGTCAACCACTCGTTTTTTGTATCATCACCGAGTATCTACCTCAAGGTTCCTTAAGAGCATATCTTCACAAAATTAAAAACAAATCCCTTCCAATGCAAAAACTGATTGCCATTGCCTTGGACATTGCTCGTGGGATGGAGTACATTCACTCGCAAGGTGTCATACATCGAGATCTCAAACCTGAAAACATTATTATCGGTTCGAATTTTTGTCTAAAGATTGCCGATTTCGGCATTGCTTGTGAGGTAGCACATTGTGATACACTGGTCGATGACCCAGGAACTTATCGTTGGATGGCCCCCGAGATGATCAAACGTAAACCTTATGGACGAAAGGTAGATGTCTATAGCTTTGGACTTATCTTGTATGAATTGGTGGCTGGAAGACTCCCTTATGAGAATTTGACTCCCATCCAAGCAGCTTATGCAGTTGTAAATAAGAATACCAGACCGGTCATATCGAGCGAGTGCCCTCCCGTGATACATGCGCTGATTGAGCGATGCTGGTCGTTGAAATCGGAGAAGAGGCCGGAGTTTTGGCAGGTAGTGAAAGTACTAGAGCATCTTGAGAATTCAATTGGGGGAGATGGTACATTGATGAATGTAGAACAGAAGCCAAGTTGGGAAGATCACAAGAAAGGTTTAAAGCATTGGATACAAAAGCTTCGCCCGAATCATTCTCAGACTTCTCTAACCTCCAAATCTAAATTCATATGA 1470 41.84 MEEDSNSWLRRTNFSHTICYRLESLQLGSFPVSTQPPLKSDVQQSKDVSASSHHRSAIPCNLPVEKVHVFNKQRSLSPPSQTTLSGAFKEARSDQKRFLTPQPQRREHKRKDKRVLSKEAKVHNSSKEEKRRNVLRHFASLKGNEISKFKESSWTKFFDNSGGKVAAVEAFNEFSVDMSKLFFGTKFAYGAHSRLYHGEYYGKDVAVKIIDLPEDDENEDLADRLTKQFSREVTLLSRLHHPNVIKLISACSQPLVFCIITEYLPQGSLRAYLHKIKNKSLPMQKLIAIALDIARGMEYIHSQGVIHRDLKPENIIIGSNFCLKIADFGIACEVAHCDTLVDDPGTYRWMAPEMIKRKPYGRKVDVYSFGLILYELVAGRLPYENLTPIQAAYAVVNKNTRPVISSECPPVIHALIERCWSLKSEKRPEFWQVVKVLEHLENSIGGDGTLMNVEQKPSWEDHKKGLKHWIQKLRPNHSQTSLTSKSKFI 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15831979 15834598 - Sed0000648.1 Sed01g2111 701415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2111 489 PRINTS Tyrosine kinase catalytic domain signature 261 274 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g2111 489 PRINTS Tyrosine kinase catalytic domain signature 408 430 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g2111 489 PRINTS Tyrosine kinase catalytic domain signature 299 317 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g2111 489 PRINTS Tyrosine kinase catalytic domain signature 345 355 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g2111 489 PRINTS Tyrosine kinase catalytic domain signature 364 386 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g2111 489 MobiDBLite consensus disorder prediction 90 106 - -
Sed01g2111 489 MobiDBLite consensus disorder prediction 113 129 - -
Sed01g2111 489 SUPERFAMILY Protein kinase-like (PK-like) 168 437 IPR011009 -
Sed01g2111 489 Gene3D Transferase(Phosphotransferase) domain 1 265 487 - -
Sed01g2111 489 MobiDBLite consensus disorder prediction 35 56 - -
Sed01g2111 489 MobiDBLite consensus disorder prediction 72 129 - -
Sed01g2111 489 MobiDBLite consensus disorder prediction 73 89 - -
Sed01g2111 489 Gene3D Phosphorylase Kinase; domain 1 169 264 - -
Sed01g2111 489 ProSitePatterns Serine/Threonine protein kinases active-site signature. 305 317 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g2111 489 PANTHER SERINE-THREONINE PROTEIN KINASE 82 439 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Sed01g2111 489 Pfam Protein tyrosine and serine/threonine kinase 185 437 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g2111 489 ProSiteProfiles Protein kinase domain profile. 181 440 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g2111 489 MobiDBLite consensus disorder prediction 35 57 - -
Sed01g2111 489 SMART serkin_6 181 437 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g2111 489 CDD STKc_MAP3K-like 190 437 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2111 Sed-Chr1:15831979 Sed08g2264 Sed-Chr8:36241638 3.60E-164 dispersed
Sed01g2111 Sed-Chr1:15831979 Sed10g0302 Sed-Chr10:1804740 5.00E-158 wgd
Sed01g2111 Sed-Chr1:15831979 Sed14g1459 Sed-Chr14:23070659 4.00E-155 wgd
Sed01g2111 Sed-Chr1:15831979 Sed08g2263 Sed-Chr8:36241638 1.00E-211 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78650 PF07714 PK_Tyr_Ser-Thr 2.10E-59 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2111 - - - 0.0