Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2129 ATGCTTCTTCTTCTCCCATTACTAATCCTCTTCTTCTCAAACCCTAATCTCCTTTCCCTTTCCCTAACCCAAGAAGGTCTCTATCTCCACGCAGTCAAACTCGCCCTCGACGACCCAGATTCCGTTCTCCAGTCATGGAACGACCGCGACGACACTCCCTGCTCCTGGTTCGGCGTCGCCTGCGACCCGTCCACCCACTCCGTCCACTCCCTCGACCTCGTCGGCACTAATCTCGCCGGCCCTTTTCCCCTTCTCCTCTGCCGCCTCCACAATCTCTCTTCTCTGACCCTTTTCAATAATTCCATTAATTCCACACTCCCCTCTGCCATTTCCGACTGCTCCGGCCTCAAACATCTCGATCTCTCTCAAAATCTCCTCACCGGCGAAATACCCACTTCGATTTCTGACCTAACGAGCCTCCGCTACCTGGATTTGACTGGGAACAACTTCTCCGGCCACATTCCGGCGAGTTTTGCTCTGTTTCCGAACTTGGAGGTTCTGTCTCTGGTTTCCAATCTTCTCGATGGGCCGGTCCCGGCGTTTTTGGGTAACATTACGTCGTTGAAGATGTTAAATCTGTCTTATAACCCGTTTTTGCCGAGCCGGATTCCGGTGGAGTTTGGGAATTTGACGAATCTTGAAGTGCTTTGGTTGACTCGGTGTAATTTGGTTGGAGAAATTCCGGAGTCTCTTGGTGGGTTGAAACGGCTGACCGATTTGGACTTGGCGTTGAATAATCTTAATGGACCGATTCCTAATTCGTTGACGGAGTTGAGTAGTGTGGTTCAGATTGAGTTGTATAATAACTCGTTAACAGGGGATTTGCCTTATGGGTTTTCAAATCTGAGTAAATTGCGGCTGTTTGATGCTTCGATGAATGGTTTGACTGGGACAATCCCTGATGAGTTGTGTAAATTGCCGCTTGAGAGTCTCAATCTCTATGAAAACAAGTTTGTGGGGAAGTTACCGGAAAGCATTGCGAACTCGCCGGGTTTGTACGAGCTCAGATTGTTCAGTAACCGGCTCACCGGCGACTTGCCGGAAAATCTCGGCAAGAACTCGCCGTTGCGATGGATTGATGTTTCTAACAACCAGTTTTCCGGCGAACTCCCTCGGCATTTGTGTGAGAAGCGCGAGTTGGAGGAGCTTCTAATGATCAACAACCAGTTTTCCGGCCAGATTCCGGCGAGTTTAGGTGGGTGTGAGAGTTTGACAAGGGTGCGATTGGGTTACAATCAGTTTTCCGGCGAGGTTCCGGCGGGATTTTGGGGGCTCCCACATGTGTATCTGTTTGAGCTGGTGAGTAATTCGTTTTCTGGAAAGATTTCAAACGCCATTGTCACTGCGAAGAACCTTTCTATTTTCATGATCTCGAAGAACAACTTCACCGGCGAGATTCCGGCGGAATTGGGTCGGCTGGAGAATCTTGTGAAGTTTTTAGCGACTGATAACAAACTCAATGGATCGTTACCTGCAAGTCTTGTGAATCTCAAGCAGCTTTCGAGTTTGGATCTTCAAAATAATGAAATCTCTGGTAAGCTTCCCATTGGACTCAAATCATGGAAGAATCTCAACGAACTGAACTTAGCAAACAACGAATTATCTGGAGAAATTCCTGAAGAAATTGGGGATTTGCCTGTTCTTAATTACCTTGATCTGTCTGGAAATCGGATTTCTGGGAAAATCCCAATTGGGTTACAGAATTTGAATCTGAATCTGCTTAACTTATCGAACAATTACTTGTCAGGAGAGCTTCCTCCATTTTTAGCCAAGGGAAATTATGGAAATAGTTTTTTGGGGAATCCAGATTTGTGTGGACATTTGGACAGATTGTGCAAAAACAGCAAAGATGAAGGCAAGAGGGAAGGCTATCTCTGGTTGCTGCGTTTCGTCTTCTTTCTCACCGGCATCGTATTGATCGTCGGCGTCGTCTGGTTTTACCTTAGATACAGGAAGTTCAAGATCGCAAAGAGAGAAATGGAGAAGGGAAAATGGACATTGATGTCCTTTCACAGGTTGGATTTCAGTGAATATGAGATCTTGGACTGTCTTGATGAAGATAACATCATTGGCAGTGGATCTTCCGGTAAAGTTTACAAGGTTGTGCTCAACAATGGCGAGGCTGTTGCAGTTAAGAAGCTGTTCGGAGGGATGAGGAAAGAGGTCGAAAAAGGCGATGTCGAGAAGGGTCAAGTAGAAGACAATGGTTTTGAAGCTGAAATCGATACTCTGGGAAAGATTAGGCACAAGAACATTGTGAAGTTGTGGTGCTGCTGTGTTACAAGAGACTTCAAACTTCTTGTTTATGAATATATGCCTAATGGAAGCTTGGGAGATTTGCTTCATAGTAGTAAAAAAGGACTGTTGGATTGGCCTACAAGGTTTAAGATAGCTCTAGATGCTGCAGAAGGGCTTTCATATCTTCATCACGATTGCGTCCCTCCGATCGTACACCGAGACGTTAAGTCTAACAATATCTTGTTGGATGGTGATTTTGGAGCACGGTTGGCCGATTTCGGTGTTGCTAAGGTCATCGATTCAACTCCAAAGGGCCCGAAATCCATGTCAGTCATCGCGGGATCTTGTGGTTACATTGCTCCTGAGTATGCTTATACCCTCCGAGTAAACGAGAAAAGCGACATATACAGCTTCGGCGTGGTAATCCTCGAGCTCATAACCGGGAGGCTCCCAATCGATCCAGAGTTCGGGGAGAAGGATTTAGTGAAATGGGTGTGTTTCACATTGGATCAAGACGGGTTCGACCAAGTCATCGACCCGAAACTGGACAGTTGTTTCGAGGAAGAAATATGCAGAGTCCTCAACATCGGCCTTCTCTGCACCAATCCACTGCCCATAAACAGGCCATCAATGAGAAAAGTGGTGAAAATGTTGCAAGAAGTTGGGGTTGAGAACCAAATCTTAACCAGCAACAAAGATGGAAAATTAACCCCTTACTACTATGAAGAAGCTTCAGATCAGGGAAGTGTAGCATAG 2994 46.23 MLLLLPLLILFFSNPNLLSLSLTQEGLYLHAVKLALDDPDSVLQSWNDRDDTPCSWFGVACDPSTHSVHSLDLVGTNLAGPFPLLLCRLHNLSSLTLFNNSINSTLPSAISDCSGLKHLDLSQNLLTGEIPTSISDLTSLRYLDLTGNNFSGHIPASFALFPNLEVLSLVSNLLDGPVPAFLGNITSLKMLNLSYNPFLPSRIPVEFGNLTNLEVLWLTRCNLVGEIPESLGGLKRLTDLDLALNNLNGPIPNSLTELSSVVQIELYNNSLTGDLPYGFSNLSKLRLFDASMNGLTGTIPDELCKLPLESLNLYENKFVGKLPESIANSPGLYELRLFSNRLTGDLPENLGKNSPLRWIDVSNNQFSGELPRHLCEKRELEELLMINNQFSGQIPASLGGCESLTRVRLGYNQFSGEVPAGFWGLPHVYLFELVSNSFSGKISNAIVTAKNLSIFMISKNNFTGEIPAELGRLENLVKFLATDNKLNGSLPASLVNLKQLSSLDLQNNEISGKLPIGLKSWKNLNELNLANNELSGEIPEEIGDLPVLNYLDLSGNRISGKIPIGLQNLNLNLLNLSNNYLSGELPPFLAKGNYGNSFLGNPDLCGHLDRLCKNSKDEGKREGYLWLLRFVFFLTGIVLIVGVVWFYLRYRKFKIAKREMEKGKWTLMSFHRLDFSEYEILDCLDEDNIIGSGSSGKVYKVVLNNGEAVAVKKLFGGMRKEVEKGDVEKGQVEDNGFEAEIDTLGKIRHKNIVKLWCCCVTRDFKLLVYEYMPNGSLGDLLHSSKKGLLDWPTRFKIALDAAEGLSYLHHDCVPPIVHRDVKSNNILLDGDFGARLADFGVAKVIDSTPKGPKSMSVIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILELITGRLPIDPEFGEKDLVKWVCFTLDQDGFDQVIDPKLDSCFEEEICRVLNIGLLCTNPLPINRPSMRKVVKMLQEVGVENQILTSNKDGKLTPYYYEEASDQGSVA 997
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16000128 16003591 + Sed0023485.1 Sed01g2129 701433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2129 997 Pfam Leucine rich repeat N-terminal domain 23 62 IPR013210 -
Sed01g2129 997 Gene3D Phosphorylase Kinase; domain 1 652 771 - -
Sed01g2129 997 Gene3D Transferase(Phosphotransferase) domain 1 772 986 - -
Sed01g2129 997 ProSiteProfiles Protein kinase domain profile. 684 974 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g2129 997 Pfam Protein kinase domain 687 905 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g2129 997 Pfam Leucine Rich Repeat 212 234 IPR001611 GO:0005515(InterPro)
Sed01g2129 997 Pfam Leucine Rich Repeat 570 590 IPR001611 GO:0005515(InterPro)
Sed01g2129 997 Pfam Leucine Rich Repeat 187 210 IPR001611 GO:0005515(InterPro)
Sed01g2129 997 Pfam Leucine Rich Repeat 356 375 IPR001611 GO:0005515(InterPro)
Sed01g2129 997 Pfam Leucine Rich Repeat 308 328 IPR001611 GO:0005515(InterPro)
Sed01g2129 997 ProSitePatterns Serine/Threonine protein kinases active-site signature. 816 828 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g2129 997 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 12 967 IPR050647 -
Sed01g2129 997 SMART LRR_sd22_2 113 139 - -
Sed01g2129 997 SMART LRR_sd22_2 234 260 - -
Sed01g2129 997 SMART LRR_sd22_2 497 526 - -
Sed01g2129 997 SMART LRR_sd22_2 545 568 - -
Sed01g2129 997 FunFam Leucine-rich receptor-like protein kinase family protein 203 301 - -
Sed01g2129 997 SMART LRR_typ_2 545 568 IPR003591 -
Sed01g2129 997 SMART LRR_typ_2 137 160 IPR003591 -
Sed01g2129 997 SMART LRR_typ_2 210 234 IPR003591 -
Sed01g2129 997 SMART LRR_typ_2 89 113 IPR003591 -
Sed01g2129 997 SMART LRR_typ_2 497 520 IPR003591 -
Sed01g2129 997 SMART LRR_typ_2 185 209 IPR003591 -
Sed01g2129 997 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 772 981 - -
Sed01g2129 997 Gene3D Ribonuclease Inhibitor 308 616 IPR032675 -
Sed01g2129 997 FunFam Receptor-like protein kinase HSL1 307 614 - -
Sed01g2129 997 SMART serkin_6 684 950 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g2129 997 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 22 185 - -
Sed01g2129 997 SUPERFAMILY RNI-like 70 376 - -
Sed01g2129 997 Gene3D Ribonuclease Inhibitor 179 278 IPR032675 -
Sed01g2129 997 SUPERFAMILY RNI-like 276 589 - -
Sed01g2129 997 ProSitePatterns Protein kinases ATP-binding region signature. 690 713 IPR017441 GO:0005524(InterPro)
Sed01g2129 997 Gene3D Ribonuclease Inhibitor 22 178 IPR032675 -
Sed01g2129 997 SUPERFAMILY Protein kinase-like (PK-like) 676 965 IPR011009 -
Sed01g2129 997 FunFam Receptor-like protein kinase HSL1 668 771 - -
Sed01g2129 997 Pfam Leucine rich repeat 91 150 IPR001611 GO:0005515(InterPro)
Sed01g2129 997 Pfam Leucine rich repeat 499 558 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2129 Sed-Chr1:16000128 Sed04g3257 Sed-Chr4:43067962 1.70E-152 dispersed
Sed01g1250 Sed-Chr1:9305135 Sed01g2129 Sed-Chr1:16000128 6.80E-77 transposed
Sed01g2129 Sed-Chr1:16000128 Sed14g1490 Sed-Chr14:23242860 3.90E-141 wgd
Sed01g2129 Sed-Chr1:16000128 Sed08g2241 Sed-Chr8:36104350 4.30E-249 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78651 PF00069 Pkinase 9.50E-43 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2129 - - - 0.0