Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2140 ATGAAGCTCTGCCTTTTCACTCTCACCACTCAGCCATGCCAGTCCCTTCTTCTTCTTCTTCCCCCCTCTCTCTCTGTTTTCTCACTCTGCTTCTCATTTTCATCACACCATCAAAATGTGGTGCAGCTACAGCAGCAGCAGCTCCTAAACAAGCCCCCGCCCGCCGCAACCGCCTCCTCACGGTCGACTACTACAACAAAACATGCCCTCACCTCGAGCAACTCGTCTTCTCAATCACAACCCAACAGTTCAGAGACGCACCATAAGAAAAAATGGGAATCCCACTACCCCAATACCCCACATTTTGAAATAATAATAATATATAAAGTGGCAGCGGAGAAGGATGCGGCGGACAACAAGGGGCTGAGAGTGGAGGGGTTTGAAAGCATCAAGAAGGCCAAGGCGTTGGTTGAGAGCAAGTGTCCTGGCGTTGTGTCTTGTGCTGACATCCTCGCAATTGCAGCCAGAGATTTTGTCCATTTGGCAGGAGGACCGTATTACCCGGTGAAGAAAGGGCGATGGGACGGGAAGATATCGACGGCGGCCAGAGTAGGTACGAATCTGCCGCGAGCAAACTCCACCGTCGATCAGCTCCTCAAGCTGTTCAACTCGAAAGGCCTAAGCGCCGACGACCTAGTCGTCCTCTCCGGCGCGCACACGATCGGGTTCGCGCACTGCGAGCATTTCACGAGCCGTCTGTACGACTACAGAGGCACGAAGCAGCCGGATCCGGCGATCGACGGGCGGCTGCTGAAGGAGCTTAGGATGTCGTGCCCTCGCTACGGCGGGAATGCGGACATTGTGGCGCCGTTCGACGTAACGACGCCGTTCGTGTTCGACCATGCGTACTACGGGAATCTGGAAGGGAGATTAGGGCTGTTGGCAACGGATCAAGCTCTGGTTTCTGATGCGAGGTTTAAGATGATGGTGCAGAGTTTGGCGAAGGATAAGCAGAAGTTTTTTCAAGCTTTTGCGGCGGCGATGGACAAAATGGGGTCGATTGGCGTCAAGAGGGGACGAAGACATGGAGAACGAAGGACGGATTGTAGTATTCATCAGACTTGA 1065 53.62 MKLCLFTLTTQPCQSLLLLLPPSLSVFSLCFSFSSHHQNVVQLQQQQLLNKPPPAATASSRSTTTTKHALTSSNSSSQSQPNSSETHHKKKWESHYPNTPHFEIIIIYKVAAEKDAADNKGLRVEGFESIKKAKALVESKCPGVVSCADILAIAARDFVHLAGGPYYPVKKGRWDGKISTAARVGTNLPRANSTVDQLLKLFNSKGLSADDLVVLSGAHTIGFAHCEHFTSRLYDYRGTKQPDPAIDGRLLKELRMSCPRYGGNADIVAPFDVTTPFVFDHAYYGNLEGRLGLLATDQALVSDARFKMMVQSLAKDKQKFFQAFAAAMDKMGSIGVKRGRRHGERRTDCSIHQT 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16054982 16057964 - Sed0021347.1 Sed01g2140 701444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2140 354 CDD secretory_peroxidase 112 350 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Sed01g2140 354 MobiDBLite consensus disorder prediction 45 95 - -
Sed01g2140 354 PRINTS Haem peroxidase superfamily signature 145 162 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g2140 354 PRINTS Haem peroxidase superfamily signature 272 287 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g2140 354 PRINTS Haem peroxidase superfamily signature 163 175 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g2140 354 PRINTS Haem peroxidase superfamily signature 211 226 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g2140 354 FunFam Peroxidase 189 331 - -
Sed01g2140 354 MobiDBLite consensus disorder prediction 45 83 - -
Sed01g2140 354 ProSitePatterns Peroxidases proximal heme-ligand signature. 211 221 IPR019793 -
Sed01g2140 354 Pfam Peroxidase 109 316 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g2140 354 ProSiteProfiles Plant heme peroxidase family profile. 112 353 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g2140 354 PRINTS Plant peroxidase signature 210 222 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g2140 354 PRINTS Plant peroxidase signature 144 154 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g2140 354 PRINTS Plant peroxidase signature 326 339 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g2140 354 PRINTS Plant peroxidase signature 125 138 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g2140 354 PRINTS Plant peroxidase signature 163 178 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g2140 354 PRINTS Plant peroxidase signature 270 285 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g2140 354 PRINTS Plant peroxidase signature 286 303 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g2140 354 PANTHER - 109 351 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g2140 354 Gene3D Peroxidase, domain 2 189 331 - -
Sed01g2140 354 Gene3D - 111 351 - -
Sed01g2140 354 SUPERFAMILY Heme-dependent peroxidases 109 351 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2140 Sed-Chr1:16054982 Sed11g2264 Sed-Chr11:35900894 3.40E-55 dispersed
Sed01g2140 Sed-Chr1:16054982 Sed08g2534 Sed-Chr8:38049478 3.20E-53 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2140 K00430 - csv:101216263 459.144