Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2154 ATGGCAGAGAGAAAGCATGAAGATCATGAGAGTGGAATTAAGCTGTTTGGGAAAACAATTATGTTGCAAAATCAGAAGCAGATGAAAGAAGAAGAAGAAAAGGCAAATAATGATAAATCAGAATCTGCTGAGAAAAAGGCTGAAAAGACAATTGCTTGCCCAAGATGCAAAAGCTTGGACACCAAATTTTGCTATTTCAATAACTATAATGTTAATCAGCCAAGGCATTTCTGCAAGGGCTGTCAGAGATATTGGACCGCCGGTGGGGCCCTCCGCAACGTCCCCGTCGGTGCCGGCCGCCGGAAATCCAAGCCCCCCTGCCGGACCTTCGACTCCTTGCCGGAAAATTGCGTCTTTGATTCTTCCGGCATCGTGGCCGTGCAGCCCTTTGAGTTGGAAGGTGTCGTCGAGGATTGGCATGTCGCCGCCGTACACGGTGGTTTCCGCCAAATCTTACCGGTTAAGCGACGGAGGGATTGCCATGATGGTCAAATCTGTTAA 501 48.5 MAERKHEDHESGIKLFGKTIMLQNQKQMKEEEEKANNDKSESAEKKAEKTIACPRCKSLDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKSKPPCRTFDSLPENCVFDSSGIVAVQPFELEGVVEDWHVAAVHGGFRQILPVKRRRDCHDGQIC 166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16172692 16174047 - Sed0026836.1 Sed01g2154 701458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2154 166 Pfam Dof domain, zinc finger 49 104 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed01g2154 166 ProSiteProfiles Zinc finger Dof-type profile. 51 105 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed01g2154 166 MobiDBLite consensus disorder prediction 25 44 - -
Sed01g2154 166 Coils Coil 21 48 - -
Sed01g2154 166 ProSitePatterns Zinc finger Dof-type signature. 53 89 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed01g2154 166 PANTHER CYCLIC DOF FACTOR 2 27 105 IPR045174 GO:0003677(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g2154 166 MobiDBLite consensus disorder prediction 1 44 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2154 Sed-Chr1:16172692 Sed04g0711 Sed-Chr4:5714826 6.30E-28 dispersed
Sed01g2154 Sed-Chr1:16172692 Sed10g0236 Sed-Chr10:1387580 2.30E-38 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37251 PF02701 zf-Dof 1.00E-31 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2154 - - - 0.0