Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2154 ATGGCAGAGAGAAAGCATGAAGATCATGAGAGTGGAATTAAGCTGTTTGGGAAAACAATTATGTTGCAAAATCAGAAGCAGATGAAAGAAGAAGAAGAAAAGGCAAATAATGATAAATCAGAATCTGCTGAGAAAAAGGCTGAAAAGACAATTGCTTGCCCAAGATGCAAAAGCTTGGACACCAAATTTTGCTATTTCAATAACTATAATGTTAATCAGCCAAGGCATTTCTGCAAGGGCTGTCAGAGATATTGGACCGCCGGTGGGGCCCTCCGCAACGTCCCCGTCGGTGCCGGCCGCCGGAAATCCAAGCCCCCCTGCCGGACCTTCGACTCCTTGCCGGAAAATTGCGTCTTTGATTCTTCCGGCATCGTGGCCGTGCAGCCCTTTGAGTTGGAAGGTGTCGTCGAGGATTGGCATGTCGCCGCCGTACACGGTGGTTTCCGCCAAATCTTACCGGTTAAGCGACGGAGGGATTGCCATGATGGTCAAATCTGTTAA 501 48.5 MAERKHEDHESGIKLFGKTIMLQNQKQMKEEEEKANNDKSESAEKKAEKTIACPRCKSLDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKSKPPCRTFDSLPENCVFDSSGIVAVQPFELEGVVEDWHVAAVHGGFRQILPVKRRRDCHDGQIC 166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16172692 16174047 - Sed0026836.1 Sed01g2154 701458

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2154 166 Pfam Dof domain, zinc finger 49 104 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed01g2154 166 ProSiteProfiles Zinc finger Dof-type profile. 51 105 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed01g2154 166 MobiDBLite consensus disorder prediction 25 44 - -
Sed01g2154 166 Coils Coil 21 48 - -
Sed01g2154 166 ProSitePatterns Zinc finger Dof-type signature. 53 89 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed01g2154 166 PANTHER CYCLIC DOF FACTOR 2 27 105 IPR045174 GO:0003677(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g2154 166 MobiDBLite consensus disorder prediction 1 44 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2154 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2154 Sed-Chr1:16172692 Sed04g0711 Sed-Chr4:5714826 6.30E-28 dispersed
Sed01g2154 Sed-Chr1:16172692 Sed10g0236 Sed-Chr10:1387580 2.30E-38 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g214 . . Bda02g00030 Bda09g00803 . Bpe01g00871 Bma14g01000 Bma01g01447 Cmo13g00632 Cmo18g00391 Cma03g01320 Cma07g00189 Car03g01185 Car07g00157 Sed10g0236 Cpe09g00808 Cpe10g00145 Bhi03g00282 Tan03g2576 Cmetu04g2899 . Hepe04g1916 . . Cla01g02318 Cam01g2430 Cec04g2078 Cco04g2154 Clacu01g2452 Cmu01g2315 Cre04g1984 . . Cone6ag0960 Cone9ag0968 Lsi01g00243 Csa06g03703 Chy12g00096 Cme08g00224 Blo08g00653 . . Bda07g00980 . Bpe08g00766 Bma07g00840 Bma11g00999 Sed01g2154 Cmo03g01322 Cmo07g00184 Cma13g00606 Cma18g00411 Car13g00488 Car18g00388 Cpe19g01067 Cpe20g00461 Bhi08g02203 Tan05g2493 Cmetu12g2109 Lac10g0947 Hepe07g1867 . . Cla03g00724 Cam03g0662 Cec03g0636 Cco03g0672 Clacu03g0770 Cmu03g1367 Cre03g0949 Lsi02g00805 Csa01g02327 Chy02g00228 Cme12g01293
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed01g2154 . 12 166 C2C2-Dof Transcription Factor Family AT1G29160 55.2 3.1e-41 166.0
Sed10g0236 . 6 155 C2C2-Dof Transcription Factor Family AT1G29160 54.5 2.6e-40 162.9
Sed01g2154 . 12 166 C2C2-Dof Transcription Factor Family AT2G34140 54.7 4.2e-43 172.2
Sed10g0236 . 6 155 C2C2-Dof Transcription Factor Family AT2G34140 53.4 6.9e-38 154.8
Sed04g1274 . 1 127 C2C2-Dof Transcription Factor Family AT2G37590 63.8 1.4e-39 161.4
Sed03g0078 . 1 131 C2C2-Dof Transcription Factor Family AT2G37590 63.8 7.1e-39 159.1
Sed01g2759 . 1 135 C2C2-Dof Transcription Factor Family AT2G37590 65.7 2.7e-38 157.1
Sed01g1076 . 1 133 C2C2-Dof Transcription Factor Family AT2G37590 55.5 1.5e-36 151.4
Sed08g0219 . 102 453 C2C2-Dof Transcription Factor Family AT3G47500 52.4 8.0e-86 315.5
Sed01g1076 . 1 133 C2C2-Dof Transcription Factor Family AT5G02460 58.3 7.0e-41 166.0
Sed13g1381 . 1 116 C2C2-Dof Transcription Factor Family AT5G02460 58.1 1.0e-39 162.2
Sed13g1380 . 1 124 C2C2-Dof Transcription Factor Family AT5G02460 57.2 4.3e-38 156.8
Sed01g2759 . 1 135 C2C2-Dof Transcription Factor Family AT5G02460 64.6 2.8e-37 154.1
Sed05g2954 . 46 122 C2C2-Dof Transcription Factor Family AT5G02460 88.3 1.8e-36 151.4
Sed03g0078 . 1 131 C2C2-Dof Transcription Factor Family AT5G02460 62.6 2.3e-36 151.0
Sed13g1380 . 27 198 C2C2-Dof Transcription Factor Family AT3G55370 50.8 1.6e-39 161.4
Sed13g1381 . 19 190 C2C2-Dof Transcription Factor Family AT3G55370 50.8 1.6e-39 161.4
Sed04g1274 . 48 133 C2C2-Dof Transcription Factor Family AT3G55370 76.7 1.7e-36 151.4
Sed08g0300 . 28 302 C2C2-Dof Transcription Factor Family AT5G60850 50.2 8.6e-47 185.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008695 0 1 0 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37251 PF02701 zf-Dof 1.00E-31 No_clan Sed TF