Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g2154 | ATGGCAGAGAGAAAGCATGAAGATCATGAGAGTGGAATTAAGCTGTTTGGGAAAACAATTATGTTGCAAAATCAGAAGCAGATGAAAGAAGAAGAAGAAAAGGCAAATAATGATAAATCAGAATCTGCTGAGAAAAAGGCTGAAAAGACAATTGCTTGCCCAAGATGCAAAAGCTTGGACACCAAATTTTGCTATTTCAATAACTATAATGTTAATCAGCCAAGGCATTTCTGCAAGGGCTGTCAGAGATATTGGACCGCCGGTGGGGCCCTCCGCAACGTCCCCGTCGGTGCCGGCCGCCGGAAATCCAAGCCCCCCTGCCGGACCTTCGACTCCTTGCCGGAAAATTGCGTCTTTGATTCTTCCGGCATCGTGGCCGTGCAGCCCTTTGAGTTGGAAGGTGTCGTCGAGGATTGGCATGTCGCCGCCGTACACGGTGGTTTCCGCCAAATCTTACCGGTTAAGCGACGGAGGGATTGCCATGATGGTCAAATCTGTTAA | 501 | 48.5 | MAERKHEDHESGIKLFGKTIMLQNQKQMKEEEEKANNDKSESAEKKAEKTIACPRCKSLDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKSKPPCRTFDSLPENCVFDSSGIVAVQPFELEGVVEDWHVAAVHGGFRQILPVKRRRDCHDGQIC | 166 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 16172692 | 16174047 | - | Sed0026836.1 | Sed01g2154 | 701458 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g2154 | 166 | Pfam | Dof domain, zinc finger | 49 | 104 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Sed01g2154 | 166 | ProSiteProfiles | Zinc finger Dof-type profile. | 51 | 105 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Sed01g2154 | 166 | MobiDBLite | consensus disorder prediction | 25 | 44 | - | - | |
Sed01g2154 | 166 | Coils | Coil | 21 | 48 | - | - | |
Sed01g2154 | 166 | ProSitePatterns | Zinc finger Dof-type signature. | 53 | 89 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Sed01g2154 | 166 | PANTHER | CYCLIC DOF FACTOR 2 | 27 | 105 | IPR045174 | GO:0003677(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed01g2154 | 166 | MobiDBLite | consensus disorder prediction | 1 | 44 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g2154 | Sed-Chr1:16172692 | Sed04g0711 | Sed-Chr4:5714826 | 6.30E-28 | dispersed | |
Sed01g2154 | Sed-Chr1:16172692 | Sed10g0236 | Sed-Chr10:1387580 | 2.30E-38 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37251 | PF02701 | zf-Dof | 1.00E-31 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g2154 | - | - | - | 0.0 |