Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2162 ATGGAGAAAAAAGGTGTCATTTTAATGCAAAAATACGAACTCGGTAGGATGCTAGGACAAGGTAATTTTGCCAAAGTCTACCACGCTCGTAATCTCAAGTCAGAACAAAGCGTAGCCATTAAGATCATCGACAAAGATAAGGTGCTACGTGTCGGCCTCATCGACCAAATCAAGAGGGAAATATGTACGATGCGCCTCGTACGCCATCCGAACGTGGTGCAACTCTATGAGGTGATGGCTAGCCGGACCAAGATCTATTTTGTCATGGAGTATGTGAAAGGTGGGGAGCTTTTCGATAAGGTGGCGAATGGGAAGCTGAAGGAAGATGTTGCTCGTAAGTACTTTCAACAGCTCATTAGTGCGGTTGACTATTGTCACAGCCGTGGCGTATACCATCGTGATATCAAACCTGAAAATCTCCTCGTTGATGAGTTTGGTAATCTTAAGATTTCTGATTTTGGGCTGAGTGCTTTGGCTGAATCTAGAAGGAAAGATGGGCTTCTTCATACCACTTGTGGGACCCCGGCTTATGTTGCCCCTGAAGTCATCAACAAGAAAGGTTATGATGGTGCTGAAGCTGATATTTGGTCATCTGGAGTTGTCCTGTTTGTTCTTCTAGCTAGTTATCTCCCTTTCCATGATCAAAATATGATGGAAATGTACAGAAAAATCTCAAAAGGGGAATTCAAATGCCCTCAATGGTTTCCCCCAGAAGTTCGCAAACTGCTCTCAAGAATCCTTGATCCATGTCCTCACACCCGAATAAACATGGCCAAGCTCATGGAGAATTCCTGGTTCAAAAAGGGTTTCAAGGCAAATGTAGCACCTCCAAAACCGCTCGGCGACATCTCTTCGGTGAGCGACGTCCACGCCGTTTTCGACGAAATTAGTTCAGAAGGAAGCTCTGTTAGCAACAGCAGCACTAGTGAGAGTGTAAAGCCACCGAGAAGAAATAGTTCCTACAATGCGTTTGACATAATATCCCTCTCACCAGGATTTGATCTGTCAGGACTGTTTGAGGAGGAGGTGAATGAGAAGCCCCAGATGCGGTTCACGTCGAAGGAACCGGAGTCGGTGATCGTGTCGAAGTTTGAAGAAATAGCAGAGATGGAGAGTTTCAAGGTGATGAAGAAAGATGGGATAGTGCAAATGCAAGGGAGTAAGGAAGGGAGAAAGGGGCAGTTGAGTATAGATGCTGAGATATTTGAGGTGACGCCTTCTTTTTTTGTGGTGGAGTTGAAGAAAACTTCTGGGGACACTTTGGAATACATGCAATTTTACAACAAAGAAATGAGACCTTGTCTTAAGGACATTGTGTGGACTTGGGAAGGAAATGAACAACAACAACAACAAATTGATTAG 1362 44.42 MEKKGVILMQKYELGRMLGQGNFAKVYHARNLKSEQSVAIKIIDKDKVLRVGLIDQIKREICTMRLVRHPNVVQLYEVMASRTKIYFVMEYVKGGELFDKVANGKLKEDVARKYFQQLISAVDYCHSRGVYHRDIKPENLLVDEFGNLKISDFGLSALAESRRKDGLLHTTCGTPAYVAPEVINKKGYDGAEADIWSSGVVLFVLLASYLPFHDQNMMEMYRKISKGEFKCPQWFPPEVRKLLSRILDPCPHTRINMAKLMENSWFKKGFKANVAPPKPLGDISSVSDVHAVFDEISSEGSSVSNSSTSESVKPPRRNSSYNAFDIISLSPGFDLSGLFEEEVNEKPQMRFTSKEPESVIVSKFEEIAEMESFKVMKKDGIVQMQGSKEGRKGQLSIDAEIFEVTPSFFVVELKKTSGDTLEYMQFYNKEMRPCLKDIVWTWEGNEQQQQQID 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16282261 16284412 + Sed0019255.1 Sed01g2162 701466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2162 453 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g2162 453 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g2162 453 Pfam NAF domain 320 377 IPR004041 GO:0007165(InterPro)
Sed01g2162 453 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g2162 453 FunFam Non-specific serine/threonine protein kinase 2 306 - -
Sed01g2162 453 Gene3D Transferase(Phosphotransferase) domain 1 92 273 - -
Sed01g2162 453 Gene3D Phosphorylase Kinase; domain 1 3 91 - -
Sed01g2162 453 ProSiteProfiles NAF domain profile. 316 340 IPR018451 GO:0007165(InterPro)
Sed01g2162 453 FunFam Non-specific serine/threonine protein kinase 3 91 - -
Sed01g2162 453 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 4 433 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Sed01g2162 453 SMART serkin_6 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g2162 453 Gene3D Kinase associated domain 1, KA1 316 441 - -
Sed01g2162 453 CDD CIPK_C 322 436 - -
Sed01g2162 453 FunFam Non-specific serine/threonine protein kinase 316 440 - -
Sed01g2162 453 CDD STKc_SnRK3 11 265 - -
Sed01g2162 453 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524(InterPro)
Sed01g2162 453 SUPERFAMILY Protein kinase-like (PK-like) 8 315 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2162 Sed-Chr1:16282261 Sed14g0587 Sed-Chr14:5939868 2.00E-164 dispersed
Sed01g2162 Sed-Chr1:16282261 Sed10g0228 Sed-Chr10:1305748 8.80E-141 wgd
Sed01g2162 Sed-Chr1:16282261 Sed14g1514 Sed-Chr14:23449645 4.40E-140 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78652 PF00069 Pkinase 4.80E-72 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2162 K07198 - csv:101206082 751.895