Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2171 ATGGACTCTACCTTCGACAATAACCACCCATTCTATTCCGGTGATCCATCAGAAGATATTGACGAAAAAGCCCCTGATTCTCCTCCTCCTTACTCCGCCGTGACCGCCGCCACCGCCAAGAAGGGCAGAAGAGGAATGAAGAAGAAAGTGGTGTCGGTGAGAATTAATGGTGACAGTCCAATTAGGACTTCTTCTGGTTCTACAGCTCCTCCTCCTGATTCTTGGGCTTGGAGAAAATACGGTCAAAAACCCATCAAAGGATCTCCTTATCCAAGGGCGTATTATAGATGCAGCAGTTCTAAGGGATGTCCGGCAAGAAAACAAGTAGAAAAGAACCGGCTTGATCCAATGATGTTGGTTATTACCTATTCAAGTGAGCATAATCATTCCGGTCCGGTTTCACGAAACAACAATAACCACCCACGAGCCCCCGTCGCAAAACCCGGCTCTCCAGACACTGTCGCGGTTCAGCCTGAACCGGAACCGGAACCGGACGAGAAATTATTGGATATGGGAGAGGAGTTCAGTTGGTTCGGGGAAATGGAAACGACGTCGTCGACTGTGCTCGAAAGCTCCATTTTCTCGAGTGGATTGGGAGATTCGATTTCGAGTGACGTGGCAATGCTTTTTCCGATGGGGGATGATGACGTGGACGAGTCGCTGTTTGCGGATCTCGGGGAGTTGCCGGAGTGCTCCCTGGTTTTCCGGCGCGGCGGCGCACGGGGCATTCCGGTGGATGAACAACCGGCGGCTGGCCAGCGCCGGATCACCACATGA 777 51.99 MDSTFDNNHPFYSGDPSEDIDEKAPDSPPPYSAVTAATAKKGRRGMKKKVVSVRINGDSPIRTSSGSTAPPPDSWAWRKYGQKPIKGSPYPRAYYRCSSSKGCPARKQVEKNRLDPMMLVITYSSEHNHSGPVSRNNNNHPRAPVAKPGSPDTVAVQPEPEPEPDEKLLDMGEEFSWFGEMETTSSTVLESSIFSSGLGDSISSDVAMLFPMGDDDVDESLFADLGELPECSLVFRRGGARGIPVDEQPAAGQRRITT 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16361670 16363373 + Sed0008537.1 Sed01g2171 701475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2171 258 ProSiteProfiles WRKY domain profile. 66 132 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed01g2171 258 SMART WRKY_cls 71 131 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed01g2171 258 SUPERFAMILY WRKY DNA-binding domain 69 131 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed01g2171 258 MobiDBLite consensus disorder prediction 127 167 - -
Sed01g2171 258 MobiDBLite consensus disorder prediction 57 71 - -
Sed01g2171 258 MobiDBLite consensus disorder prediction 1 82 - -
Sed01g2171 258 Pfam WRKY DNA -binding domain 73 129 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed01g2171 258 MobiDBLite consensus disorder prediction 127 143 - -
Sed01g2171 258 FunFam WRKY transcription factor 65 53 132 - -
Sed01g2171 258 Gene3D WRKY domain 56 133 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed01g2171 258 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 34 232 IPR044810 GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2171 Sed-Chr1:16361670 Sed04g3383 Sed-Chr4:43815880 6.50E-40 dispersed
Sed01g2171 Sed-Chr1:16361670 Sed04g3382 Sed-Chr4:43815880 1.00E-40 wgd
Sed01g2171 Sed-Chr1:16361670 Sed05g1905 Sed-Chr5:32418315 4.50E-41 wgd
Sed01g2171 Sed-Chr1:16361670 Sed08g2207 Sed-Chr8:35866387 2.40E-98 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37253 PF03106 WRKY 7.30E-25 CL0274 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2171 - - - 0.0