Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2174 ATGGCCGCCGCCGCTGCGATTTTCTCCTCTCTCCGGAGAAGGAGATCGCCGTCGCTGGAGGTTTTTCTGGCCCCCGTTGACCTCTCCGACGCCGCCTTACTCCAAACCCTAGCGGTTCTCGCCGCCGACCTCGCTTCCCGATTTTCCCACAAACCCTTCTTCCTCCACCGCGCAAATTCCCGATCCCTCCTAAGGAAACTCCACGTTTGTTTCGTCTTCTTGGATTTCCTGAACGATTGTGCGGATACGGGCTCGGCCTTGCCTCCAACTGCGTTGCTCTGTTTGAAAGAGCTTTATCTGTTGCTGTATCGCTCCAAGATTCTCCTTGATTACTGCTCCGAGTCCTCCAAGCTGTGGCTCCTGCTTCAGAACCAGTCCATTTCTGGGCATTTCCATGACTTGAACTGCGAGTTGTTGACGTTTTTCGATGTTTTTCCTGTTGGGGATGTTCCGTTGGGTCTGGATGTTATGGAGCAGGTTGAGCTTTTGCAGAAGCACTTGAGGCGGGGGAGGATGTTTGTCGATGGTCGCGACGAGGCCTTGCGGGTTCGGTTGCTTTCGTTTCTCGATGACTTTGAGCACGGTCGGGTTCCCAATCCTGGGGACATGAGGGAGTTTTTTGTGGATAAGTTGAGGATTCGGACTGCCAAGAGCTGTAGAGCTGAAATTGAGTTTCTGGAGGAGCAGATTGTGAATCGTGAGGGCGATGTCGAGCCTACCGTTGCCGTGTTGAATGGTTTCGTTGCGTTTATGAGATACAGCAGGTTTTGCCTCTTTGGATTTGAGGAAGATGAAGTTGAATCAGGAGCAATAGACCAGAAGATGCTGAAGAAGAATTTGGTTACGCAGGAGATTGTCCAGACGTTCCTCACGATTCCGAGGGACTTTTGCTGTCCTATATCACTGGATTTGTTGAAAGATCCGGTGACCATTTCTACAGGTCAAACATATGATCGTAATTCGATTACTAGATGGTTGGAAGAAGGGCACAACACTTGCCCGAAGACGGGGCAAATGCTCATTCATACTCGTCTGGCTCCCAACCGGGCGTTACGGAATTTGATTATGCAATGGAGTGTTGCCCATGAAGTTCCTTATGATCCACTGGAAGGGATGGATGCATCTGCAGAAAGTTATGCAATGGCTTCTCCCACACGAGCTGCACTAGAAGCTAACCGAGCAACAGCTATGATTCTTATTCAACAGTTATCAATCGGATCGCAAGATGCAAAGACCATTGCTGCTCGCGAGATCCGTTTGTTGGCAAAAACCGGGAAAGAGAATCGTGCCTTTATCGCAGAAGCCGGTGCCATACCTCATCTTCAAAAGTTGATGGCTTCCCCGAACCCAGTGGCACAGGAGAACTCTGTGACTGCTATGCTTAACCTTTCCATTCATGACCAGAACAAAAGTTTGATTATGAGTGAAGGAGGGTGTTTAGGATCAATAACCGAAGTATTGAGATTCGGACATACTACAGAAGCACGGGAAAATGCTGCAGCTACGTTATTCAGCCTGTCCGCAGTTCATGACTACAAGAAGAGAATAGCAGAGGAGGGCGGCGCAGTTGAAGCCTTGGCAGGGTTGCTGGGAGATGGTACCCCAAGAGGAAAGAGGGATGCCGTAACAGCTTTATTCAATCTCTCAACCCACACGGATAACTGCCTTCGAATGATTGAGGCTGGGGCAGTTACGGCACTTGTAGGAGCATTGGGGAATGAAGGTGTTGCTGAAGAAGCAGCAGGTGCATTGGCCTTGATTGTTCGACAGCCCGTTGGGGCCGAAACAGTCAGTAAAGAGGAAAGAGCTGTGGCAGGATTGATAGCAATGATGCGGTGTGGGACACCAAGAGGAAAAGAGAATGCAGTAGCAGCTTTGCTTGAGTTATGCCGGAGTGGTGGCGCTGCCACGACCGAGCAAGTGTTCAAGGCTCCCTCTTTGGCTAGGTTGCTCCAAACGATTCTATTTACCGGTACCAAGCGAGCAAGAAGAAAAGCTGCCTCACTGGCTAGAGTGTTCCAAAGATGTGAGCATGTTGCAATGCATTATGGCGGATTGGGCGTTGGTTATGCATATGAAAGTAACTCGGCTTCTAACAGGGATTCAAGCTTCCCTAGTGAGGTGTTGGTGCCGATATCCATCTCGGTACCGGTCGTATAG 2160 49.95 MAAAAAIFSSLRRRRSPSLEVFLAPVDLSDAALLQTLAVLAADLASRFSHKPFFLHRANSRSLLRKLHVCFVFLDFLNDCADTGSALPPTALLCLKELYLLLYRSKILLDYCSESSKLWLLLQNQSISGHFHDLNCELLTFFDVFPVGDVPLGLDVMEQVELLQKHLRRGRMFVDGRDEALRVRLLSFLDDFEHGRVPNPGDMREFFVDKLRIRTAKSCRAEIEFLEEQIVNREGDVEPTVAVLNGFVAFMRYSRFCLFGFEEDEVESGAIDQKMLKKNLVTQEIVQTFLTIPRDFCCPISLDLLKDPVTISTGQTYDRNSITRWLEEGHNTCPKTGQMLIHTRLAPNRALRNLIMQWSVAHEVPYDPLEGMDASAESYAMASPTRAALEANRATAMILIQQLSIGSQDAKTIAAREIRLLAKTGKENRAFIAEAGAIPHLQKLMASPNPVAQENSVTAMLNLSIHDQNKSLIMSEGGCLGSITEVLRFGHTTEARENAAATLFSLSAVHDYKKRIAEEGGAVEALAGLLGDGTPRGKRDAVTALFNLSTHTDNCLRMIEAGAVTALVGALGNEGVAEEAAGALALIVRQPVGAETVSKEERAVAGLIAMMRCGTPRGKENAVAALLELCRSGGAATTEQVFKAPSLARLLQTILFTGTKRARRKAASLARVFQRCEHVAMHYGGLGVGYAYESNSASNRDSSFPSEVLVPISISVPVV 719
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16404571 16407083 + Sed0005132.1 Sed01g2174 701478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2174 719 FunFam RING-type E3 ubiquitin transferase 368 689 - -
Sed01g2174 719 ProSiteProfiles U-box domain profile. 291 365 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed01g2174 719 Pfam U-box domain 292 363 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed01g2174 719 CDD RING-Ubox_PUB 293 345 IPR045210 -
Sed01g2174 719 Pfam Armadillo/beta-catenin-like repeat 426 464 IPR000225 GO:0005515(InterPro)
Sed01g2174 719 SMART arm_5 551 589 IPR000225 GO:0005515(InterPro)
Sed01g2174 719 SMART arm_5 425 465 IPR000225 GO:0005515(InterPro)
Sed01g2174 719 SMART arm_5 510 550 IPR000225 GO:0005515(InterPro)
Sed01g2174 719 SMART arm_5 466 508 IPR000225 GO:0005515(InterPro)
Sed01g2174 719 FunFam RING-type E3 ubiquitin transferase 288 365 - -
Sed01g2174 719 SUPERFAMILY RING/U-box 282 365 - -
Sed01g2174 719 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 436 478 IPR000225 GO:0005515(InterPro)
Sed01g2174 719 SMART Ubox_2 295 358 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed01g2174 719 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 291 366 IPR013083 -
Sed01g2174 719 SUPERFAMILY ARM repeat 398 677 IPR016024 -
Sed01g2174 719 Gene3D - 519 671 IPR011989 -
Sed01g2174 719 Gene3D - 378 518 IPR011989 -
Sed01g2174 719 PANTHER U BOX DOMAIN-CONTAINING 58 676 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2174 Sed-Chr1:16404571 Sed03g2428 Sed-Chr3:21156256 1.70E-101 dispersed
Sed01g2174 Sed-Chr1:16404571 Sed08g2733 Sed-Chr8:39121108 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2174 - - - 0.0