Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g2174 | ATGGCCGCCGCCGCTGCGATTTTCTCCTCTCTCCGGAGAAGGAGATCGCCGTCGCTGGAGGTTTTTCTGGCCCCCGTTGACCTCTCCGACGCCGCCTTACTCCAAACCCTAGCGGTTCTCGCCGCCGACCTCGCTTCCCGATTTTCCCACAAACCCTTCTTCCTCCACCGCGCAAATTCCCGATCCCTCCTAAGGAAACTCCACGTTTGTTTCGTCTTCTTGGATTTCCTGAACGATTGTGCGGATACGGGCTCGGCCTTGCCTCCAACTGCGTTGCTCTGTTTGAAAGAGCTTTATCTGTTGCTGTATCGCTCCAAGATTCTCCTTGATTACTGCTCCGAGTCCTCCAAGCTGTGGCTCCTGCTTCAGAACCAGTCCATTTCTGGGCATTTCCATGACTTGAACTGCGAGTTGTTGACGTTTTTCGATGTTTTTCCTGTTGGGGATGTTCCGTTGGGTCTGGATGTTATGGAGCAGGTTGAGCTTTTGCAGAAGCACTTGAGGCGGGGGAGGATGTTTGTCGATGGTCGCGACGAGGCCTTGCGGGTTCGGTTGCTTTCGTTTCTCGATGACTTTGAGCACGGTCGGGTTCCCAATCCTGGGGACATGAGGGAGTTTTTTGTGGATAAGTTGAGGATTCGGACTGCCAAGAGCTGTAGAGCTGAAATTGAGTTTCTGGAGGAGCAGATTGTGAATCGTGAGGGCGATGTCGAGCCTACCGTTGCCGTGTTGAATGGTTTCGTTGCGTTTATGAGATACAGCAGGTTTTGCCTCTTTGGATTTGAGGAAGATGAAGTTGAATCAGGAGCAATAGACCAGAAGATGCTGAAGAAGAATTTGGTTACGCAGGAGATTGTCCAGACGTTCCTCACGATTCCGAGGGACTTTTGCTGTCCTATATCACTGGATTTGTTGAAAGATCCGGTGACCATTTCTACAGGTCAAACATATGATCGTAATTCGATTACTAGATGGTTGGAAGAAGGGCACAACACTTGCCCGAAGACGGGGCAAATGCTCATTCATACTCGTCTGGCTCCCAACCGGGCGTTACGGAATTTGATTATGCAATGGAGTGTTGCCCATGAAGTTCCTTATGATCCACTGGAAGGGATGGATGCATCTGCAGAAAGTTATGCAATGGCTTCTCCCACACGAGCTGCACTAGAAGCTAACCGAGCAACAGCTATGATTCTTATTCAACAGTTATCAATCGGATCGCAAGATGCAAAGACCATTGCTGCTCGCGAGATCCGTTTGTTGGCAAAAACCGGGAAAGAGAATCGTGCCTTTATCGCAGAAGCCGGTGCCATACCTCATCTTCAAAAGTTGATGGCTTCCCCGAACCCAGTGGCACAGGAGAACTCTGTGACTGCTATGCTTAACCTTTCCATTCATGACCAGAACAAAAGTTTGATTATGAGTGAAGGAGGGTGTTTAGGATCAATAACCGAAGTATTGAGATTCGGACATACTACAGAAGCACGGGAAAATGCTGCAGCTACGTTATTCAGCCTGTCCGCAGTTCATGACTACAAGAAGAGAATAGCAGAGGAGGGCGGCGCAGTTGAAGCCTTGGCAGGGTTGCTGGGAGATGGTACCCCAAGAGGAAAGAGGGATGCCGTAACAGCTTTATTCAATCTCTCAACCCACACGGATAACTGCCTTCGAATGATTGAGGCTGGGGCAGTTACGGCACTTGTAGGAGCATTGGGGAATGAAGGTGTTGCTGAAGAAGCAGCAGGTGCATTGGCCTTGATTGTTCGACAGCCCGTTGGGGCCGAAACAGTCAGTAAAGAGGAAAGAGCTGTGGCAGGATTGATAGCAATGATGCGGTGTGGGACACCAAGAGGAAAAGAGAATGCAGTAGCAGCTTTGCTTGAGTTATGCCGGAGTGGTGGCGCTGCCACGACCGAGCAAGTGTTCAAGGCTCCCTCTTTGGCTAGGTTGCTCCAAACGATTCTATTTACCGGTACCAAGCGAGCAAGAAGAAAAGCTGCCTCACTGGCTAGAGTGTTCCAAAGATGTGAGCATGTTGCAATGCATTATGGCGGATTGGGCGTTGGTTATGCATATGAAAGTAACTCGGCTTCTAACAGGGATTCAAGCTTCCCTAGTGAGGTGTTGGTGCCGATATCCATCTCGGTACCGGTCGTATAG | 2160 | 49.95 | MAAAAAIFSSLRRRRSPSLEVFLAPVDLSDAALLQTLAVLAADLASRFSHKPFFLHRANSRSLLRKLHVCFVFLDFLNDCADTGSALPPTALLCLKELYLLLYRSKILLDYCSESSKLWLLLQNQSISGHFHDLNCELLTFFDVFPVGDVPLGLDVMEQVELLQKHLRRGRMFVDGRDEALRVRLLSFLDDFEHGRVPNPGDMREFFVDKLRIRTAKSCRAEIEFLEEQIVNREGDVEPTVAVLNGFVAFMRYSRFCLFGFEEDEVESGAIDQKMLKKNLVTQEIVQTFLTIPRDFCCPISLDLLKDPVTISTGQTYDRNSITRWLEEGHNTCPKTGQMLIHTRLAPNRALRNLIMQWSVAHEVPYDPLEGMDASAESYAMASPTRAALEANRATAMILIQQLSIGSQDAKTIAAREIRLLAKTGKENRAFIAEAGAIPHLQKLMASPNPVAQENSVTAMLNLSIHDQNKSLIMSEGGCLGSITEVLRFGHTTEARENAAATLFSLSAVHDYKKRIAEEGGAVEALAGLLGDGTPRGKRDAVTALFNLSTHTDNCLRMIEAGAVTALVGALGNEGVAEEAAGALALIVRQPVGAETVSKEERAVAGLIAMMRCGTPRGKENAVAALLELCRSGGAATTEQVFKAPSLARLLQTILFTGTKRARRKAASLARVFQRCEHVAMHYGGLGVGYAYESNSASNRDSSFPSEVLVPISISVPVV | 719 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 16404571 | 16407083 | + | Sed0005132.1 | Sed01g2174 | 701478 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g2174 | 719 | FunFam | RING-type E3 ubiquitin transferase | 368 | 689 | - | - | |
Sed01g2174 | 719 | ProSiteProfiles | U-box domain profile. | 291 | 365 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Sed01g2174 | 719 | Pfam | U-box domain | 292 | 363 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Sed01g2174 | 719 | CDD | RING-Ubox_PUB | 293 | 345 | IPR045210 | - | |
Sed01g2174 | 719 | Pfam | Armadillo/beta-catenin-like repeat | 426 | 464 | IPR000225 | GO:0005515(InterPro) | |
Sed01g2174 | 719 | SMART | arm_5 | 551 | 589 | IPR000225 | GO:0005515(InterPro) | |
Sed01g2174 | 719 | SMART | arm_5 | 425 | 465 | IPR000225 | GO:0005515(InterPro) | |
Sed01g2174 | 719 | SMART | arm_5 | 510 | 550 | IPR000225 | GO:0005515(InterPro) | |
Sed01g2174 | 719 | SMART | arm_5 | 466 | 508 | IPR000225 | GO:0005515(InterPro) | |
Sed01g2174 | 719 | FunFam | RING-type E3 ubiquitin transferase | 288 | 365 | - | - | |
Sed01g2174 | 719 | SUPERFAMILY | RING/U-box | 282 | 365 | - | - | |
Sed01g2174 | 719 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 436 | 478 | IPR000225 | GO:0005515(InterPro) | |
Sed01g2174 | 719 | SMART | Ubox_2 | 295 | 358 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Sed01g2174 | 719 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 291 | 366 | IPR013083 | - | |
Sed01g2174 | 719 | SUPERFAMILY | ARM repeat | 398 | 677 | IPR016024 | - | |
Sed01g2174 | 719 | Gene3D | - | 519 | 671 | IPR011989 | - | |
Sed01g2174 | 719 | Gene3D | - | 378 | 518 | IPR011989 | - | |
Sed01g2174 | 719 | PANTHER | U BOX DOMAIN-CONTAINING | 58 | 676 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g2174 | Sed-Chr1:16404571 | Sed03g2428 | Sed-Chr3:21156256 | 1.70E-101 | dispersed | |
Sed01g2174 | Sed-Chr1:16404571 | Sed08g2733 | Sed-Chr8:39121108 | 0.00E+00 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g2174 | - | - | - | 0.0 |