Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2176 ATGACATCGGGATCCAGAATGCCGACATGGAAGGAGAGGGAGAACAACAAGCGCCGTGAGAGGCGCCGCCGTGCCATCGCCGCCAAGATCTTCCTCGGCCTCCGAATGTACGGAAACTACAAGCTCCCCAAGCACTGCGACAACAATGAGGTCCTCAAAGCCCTCTGCAATGAGGCTGGTTGGACTGTCGAGGAAGACGGCACTACCTATCGGAAGGGATGCAAGCCTGTGGAACGAGATATCATGGGTGGATCGGCTTCTGCAAGTCCATGTTCATCTTACCAGCAGAGCCCATGTGCATCTTATAACCCAAGTCCTGCATCTTCTTCCTTTCCAAGCCCCACCTCTTCCCATTACGCCATTAAAGGCAATGACAATGCTGCTGATCCCAATTCCCTCATCCCATGGCTGAAGAATCTCGCCTCAGGTTCATCATCAGCTTCCTCCAGGCTGCCTTACCATAGTCTTTACTTTACTGGTGGCTCCATAAGTGCACCTGTCACCCCTCCGTCCAGCTCTCCAACGGCTCGAACACCCAGAAATCCTAATGATTGGGACAATCAACCAGCAGCAACTCCTGCTTGGGCTGCACAGCGCTTCTCAGGCTTGCCTGCATCAACCCCACCGAGCCCTGGGCGTCAGGTGTTGGCTGATCCAGCATGGCTTGATAGTATACGGATTCCTCAAAGTGGGCCATCGTCTCCTACTTTCACCCTTGTAGCAAGGAATCCGTTTGGATTTAAGGAAGAAATGTATGCTGGAGGGTCTCGTAATTGGACTCCTGCACAGAGTGGAACGTGCTCGCCCACAATTGCTGCAGGTGCTGATCTCACTTCCGATGTTCCAATGACGGATGGAGCAACAGAGTTTGCCTTTGGAAGTTGTTCGAATGGGTTGGTGAAGCCGTGGGAAGGAGAAAGAATTCATGAGGAATGCATCTCTGATGATCTAGAACTTACACTTGGGAATTCAAGCACAAGGTAA 984 52.03 MTSGSRMPTWKERENNKRRERRRRAIAAKIFLGLRMYGNYKLPKHCDNNEVLKALCNEAGWTVEEDGTTYRKGCKPVERDIMGGSASASPCSSYQQSPCASYNPSPASSSFPSPTSSHYAIKGNDNAADPNSLIPWLKNLASGSSSASSRLPYHSLYFTGGSISAPVTPPSSSPTARTPRNPNDWDNQPAATPAWAAQRFSGLPASTPPSPGRQVLADPAWLDSIRIPQSGPSSPTFTLVARNPFGFKEEMYAGGSRNWTPAQSGTCSPTIAAGADLTSDVPMTDGATEFAFGSCSNGLVKPWEGERIHEECISDDLELTLGNSSTR 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16420213 16423364 + Sed0001932.1 Sed01g2176 701480

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2176 327 MobiDBLite consensus disorder prediction 1 21 - -
Sed01g2176 327 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 1 327 IPR033264 GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0009742(InterPro)
Sed01g2176 327 MobiDBLite consensus disorder prediction 164 190 - -
Sed01g2176 327 Pfam BES1/BZR1 plant transcription factor, N-terminal 4 140 IPR008540 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2176 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2176 Sed-Chr1:16420213 Sed01g2178 Sed-Chr1:16420213 4.70E-128 dispersed
Sed01g2176 Sed-Chr1:16420213 Sed01g2177 Sed-Chr1:16420213 1.00E-178 tandem
Sed10g1328 Sed-Chr10:28915984 Sed01g2176 Sed-Chr1:16420213 1.70E-42 transposed
Sed01g2176 Sed-Chr1:16420213 Sed08g2730 Sed-Chr8:39108351 2.10E-144 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed10g1328 . 1 309 BZR Transcription Factor Family AT1G75080 58.7 2.1e-86 317.0
Sed14g1094 . 29 320 BZR Transcription Factor Family AT1G75080 57.0 3.3e-76 283.1
Sed10g1328 . 1 309 BZR Transcription Factor Family AT1G19350 58.6 3.9e-85 312.8
Sed14g1094 . 29 318 BZR Transcription Factor Family AT1G19350 57.0 1.6e-75 280.8
Sed14g1094 . 3 320 BZR Transcription Factor Family AT3G50750 55.1 6.1e-76 282.0
Sed10g1328 . 1 307 BZR Transcription Factor Family AT3G50750 53.4 1.9e-61 233.8
Sed04g1537 . 77 325 BZR Transcription Factor Family AT4G18890 53.4 2.8e-49 193.0
Sed13g0629 . 77 324 BZR Transcription Factor Family AT4G18890 53.4 3.1e-48 189.5
Sed01g2176 . 80 327 BZR Transcription Factor Family AT4G18890 50.4 4.5e-47 185.7
Sed01g2177 . 80 327 BZR Transcription Factor Family AT4G18890 50.4 4.5e-47 185.7
Sed01g2178 . 1 246 BZR Transcription Factor Family AT4G18890 50.4 3.8e-46 182.6
Sed13g0629 . 1 324 BZR Transcription Factor Family AT1G78700 72.5 5.1e-114 408.7
Sed04g1537 . 1 325 BZR Transcription Factor Family AT1G78700 71.9 1.6e-112 403.7
Sed01g2176 . 1 327 BZR Transcription Factor Family AT1G78700 68.7 3.6e-104 375.9
Sed01g2177 . 1 327 BZR Transcription Factor Family AT1G78700 68.7 3.6e-104 375.9
Sed08g2730 . 1 332 BZR Transcription Factor Family AT1G78700 63.4 1.2e-94 344.4
Sed01g2178 . 2 246 BZR Transcription Factor Family AT1G78700 62.7 1.1e-60 231.5
Sed14g1094 . 29 201 BZR Transcription Factor Family AT4G36780 78.0 7.4e-63 238.4
Sed10g1328 . 33 204 BZR Transcription Factor Family AT4G36780 59.3 3.0e-40 163.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000940 3 4 6 4 3 2 4 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 2 2 6 3 3 85
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37255 PF05687 BES1_N 8.30E-67 No_clan Sed TF