Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g2176 | ATGACATCGGGATCCAGAATGCCGACATGGAAGGAGAGGGAGAACAACAAGCGCCGTGAGAGGCGCCGCCGTGCCATCGCCGCCAAGATCTTCCTCGGCCTCCGAATGTACGGAAACTACAAGCTCCCCAAGCACTGCGACAACAATGAGGTCCTCAAAGCCCTCTGCAATGAGGCTGGTTGGACTGTCGAGGAAGACGGCACTACCTATCGGAAGGGATGCAAGCCTGTGGAACGAGATATCATGGGTGGATCGGCTTCTGCAAGTCCATGTTCATCTTACCAGCAGAGCCCATGTGCATCTTATAACCCAAGTCCTGCATCTTCTTCCTTTCCAAGCCCCACCTCTTCCCATTACGCCATTAAAGGCAATGACAATGCTGCTGATCCCAATTCCCTCATCCCATGGCTGAAGAATCTCGCCTCAGGTTCATCATCAGCTTCCTCCAGGCTGCCTTACCATAGTCTTTACTTTACTGGTGGCTCCATAAGTGCACCTGTCACCCCTCCGTCCAGCTCTCCAACGGCTCGAACACCCAGAAATCCTAATGATTGGGACAATCAACCAGCAGCAACTCCTGCTTGGGCTGCACAGCGCTTCTCAGGCTTGCCTGCATCAACCCCACCGAGCCCTGGGCGTCAGGTGTTGGCTGATCCAGCATGGCTTGATAGTATACGGATTCCTCAAAGTGGGCCATCGTCTCCTACTTTCACCCTTGTAGCAAGGAATCCGTTTGGATTTAAGGAAGAAATGTATGCTGGAGGGTCTCGTAATTGGACTCCTGCACAGAGTGGAACGTGCTCGCCCACAATTGCTGCAGGTGCTGATCTCACTTCCGATGTTCCAATGACGGATGGAGCAACAGAGTTTGCCTTTGGAAGTTGTTCGAATGGGTTGGTGAAGCCGTGGGAAGGAGAAAGAATTCATGAGGAATGCATCTCTGATGATCTAGAACTTACACTTGGGAATTCAAGCACAAGGTAA | 984 | 52.03 | MTSGSRMPTWKERENNKRRERRRRAIAAKIFLGLRMYGNYKLPKHCDNNEVLKALCNEAGWTVEEDGTTYRKGCKPVERDIMGGSASASPCSSYQQSPCASYNPSPASSSFPSPTSSHYAIKGNDNAADPNSLIPWLKNLASGSSSASSRLPYHSLYFTGGSISAPVTPPSSSPTARTPRNPNDWDNQPAATPAWAAQRFSGLPASTPPSPGRQVLADPAWLDSIRIPQSGPSSPTFTLVARNPFGFKEEMYAGGSRNWTPAQSGTCSPTIAAGADLTSDVPMTDGATEFAFGSCSNGLVKPWEGERIHEECISDDLELTLGNSSTR | 327 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 16420213 | 16423364 | + | Sed0001932.1 | Sed01g2176 | 701480 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g2176 | 327 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Sed01g2176 | 327 | PANTHER | BES1/BZR1 HOMOLOG PROTEIN 3-RELATED | 1 | 327 | IPR033264 | GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0009742(InterPro) | |
Sed01g2176 | 327 | MobiDBLite | consensus disorder prediction | 164 | 190 | - | - | |
Sed01g2176 | 327 | Pfam | BES1/BZR1 plant transcription factor, N-terminal | 4 | 140 | IPR008540 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g2176 | Sed-Chr1:16420213 | Sed01g2178 | Sed-Chr1:16420213 | 4.70E-128 | dispersed | |
Sed01g2176 | Sed-Chr1:16420213 | Sed01g2177 | Sed-Chr1:16420213 | 1.00E-178 | tandem | |
Sed10g1328 | Sed-Chr10:28915984 | Sed01g2176 | Sed-Chr1:16420213 | 1.70E-42 | transposed | |
Sed01g2176 | Sed-Chr1:16420213 | Sed08g2730 | Sed-Chr8:39108351 | 2.10E-144 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37255 | PF05687 | BES1_N | 8.30E-67 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g2176 | - | - | - | 0.0 |