Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2176 ATGACATCGGGATCCAGAATGCCGACATGGAAGGAGAGGGAGAACAACAAGCGCCGTGAGAGGCGCCGCCGTGCCATCGCCGCCAAGATCTTCCTCGGCCTCCGAATGTACGGAAACTACAAGCTCCCCAAGCACTGCGACAACAATGAGGTCCTCAAAGCCCTCTGCAATGAGGCTGGTTGGACTGTCGAGGAAGACGGCACTACCTATCGGAAGGGATGCAAGCCTGTGGAACGAGATATCATGGGTGGATCGGCTTCTGCAAGTCCATGTTCATCTTACCAGCAGAGCCCATGTGCATCTTATAACCCAAGTCCTGCATCTTCTTCCTTTCCAAGCCCCACCTCTTCCCATTACGCCATTAAAGGCAATGACAATGCTGCTGATCCCAATTCCCTCATCCCATGGCTGAAGAATCTCGCCTCAGGTTCATCATCAGCTTCCTCCAGGCTGCCTTACCATAGTCTTTACTTTACTGGTGGCTCCATAAGTGCACCTGTCACCCCTCCGTCCAGCTCTCCAACGGCTCGAACACCCAGAAATCCTAATGATTGGGACAATCAACCAGCAGCAACTCCTGCTTGGGCTGCACAGCGCTTCTCAGGCTTGCCTGCATCAACCCCACCGAGCCCTGGGCGTCAGGTGTTGGCTGATCCAGCATGGCTTGATAGTATACGGATTCCTCAAAGTGGGCCATCGTCTCCTACTTTCACCCTTGTAGCAAGGAATCCGTTTGGATTTAAGGAAGAAATGTATGCTGGAGGGTCTCGTAATTGGACTCCTGCACAGAGTGGAACGTGCTCGCCCACAATTGCTGCAGGTGCTGATCTCACTTCCGATGTTCCAATGACGGATGGAGCAACAGAGTTTGCCTTTGGAAGTTGTTCGAATGGGTTGGTGAAGCCGTGGGAAGGAGAAAGAATTCATGAGGAATGCATCTCTGATGATCTAGAACTTACACTTGGGAATTCAAGCACAAGGTAA 984 52.03 MTSGSRMPTWKERENNKRRERRRRAIAAKIFLGLRMYGNYKLPKHCDNNEVLKALCNEAGWTVEEDGTTYRKGCKPVERDIMGGSASASPCSSYQQSPCASYNPSPASSSFPSPTSSHYAIKGNDNAADPNSLIPWLKNLASGSSSASSRLPYHSLYFTGGSISAPVTPPSSSPTARTPRNPNDWDNQPAATPAWAAQRFSGLPASTPPSPGRQVLADPAWLDSIRIPQSGPSSPTFTLVARNPFGFKEEMYAGGSRNWTPAQSGTCSPTIAAGADLTSDVPMTDGATEFAFGSCSNGLVKPWEGERIHEECISDDLELTLGNSSTR 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16420213 16423364 + Sed0001932.1 Sed01g2176 701480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2176 327 MobiDBLite consensus disorder prediction 1 21 - -
Sed01g2176 327 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 1 327 IPR033264 GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0009742(InterPro)
Sed01g2176 327 MobiDBLite consensus disorder prediction 164 190 - -
Sed01g2176 327 Pfam BES1/BZR1 plant transcription factor, N-terminal 4 140 IPR008540 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2176 Sed-Chr1:16420213 Sed01g2178 Sed-Chr1:16420213 4.70E-128 dispersed
Sed01g2176 Sed-Chr1:16420213 Sed01g2177 Sed-Chr1:16420213 1.00E-178 tandem
Sed10g1328 Sed-Chr10:28915984 Sed01g2176 Sed-Chr1:16420213 1.70E-42 transposed
Sed01g2176 Sed-Chr1:16420213 Sed08g2730 Sed-Chr8:39108351 2.10E-144 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37255 PF05687 BES1_N 8.30E-67 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2176 - - - 0.0