Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2182 ATGGATCAGACGAATAGCAGTAACAACGGAGTGAGGTTTTCGCTGGGGAAGCAGTCGTCGATGGCGCCGGAGCGGCGGCCGGAGGAGGAGGCGGCGGCGGAGGACGGGGAGGAGATCGATGCGGGAGTGAGATTGATGTATTCGGCGAATGAAGGCGATTTGGAAGGGATTAACGAGCTTTTAGATTCTGGAATTGATGTAAATTTTCACGATATTGATAATCGGACGGCTCTTCATGTTGCTGCTTGTCAAGGCTCCTCGGAGATCGTCGATTTGTTGCTCCGGCGAGGCGCTGAAATTGACCCCAAAGATCGCTGGGGTAGTACGCCTCTTGCAGATGCTATATACTACAAAAACCATGAAGTTATCAAATTGTTGGAAAAACATGGAGCAAAACATCTGAATGCTCCCATGCTCGTAAAACATGCTCGTCAAGTTCCAGAATATGAAATTGATCCCGAGGAATTTGACTTCACAAACAGTGTCGACTTGACCAAGGGAACCTTCCATTTAGCATTATGGCGTGGAATCCGAGTTGCAGTTAAAGAGCTGCCCGAGGATGTGACTTCAGAGGAGGATAAAGTGAACGCCTTTAGAGATGAACTTGCATTGCTGCAGAAGCTTCGGCATCCGAATGTCGTTCAATTTCTTGGTGCTGTCACTCAAAGTAGTCCCATGATGATTGTTACTGAATATTTGCCAAAGGGAGATCTTTGGCAATTTTTACATAGAAAGGGAGCTTTAAAACCAATAGTAGCTGTGAAGCTTGCCCTTGATATTGCAAGGGGAATGAACTATCTGCACGAATACAAACCCGCGCCAATCATCCACCGTGATCTCGAGCCATCAAATATATTGCGAGACGACACTGGGAACCTGAAAGTTGCAGATTTTGGAGTTAGCAAGTTGCTCACTGTCAAGGAGGATAAGCCTCTAACTTGTCAAGGCAATGCCTGCCGATATGTTGCTCCAGAAGTTTTCAAAAACAATGGATACGATACCAAAGTGGATGTCTACTCCTTTGCTTTAATTCTACAAGAGATGATCGAAGGTCAACCGCCATTTTCAAACAAGAAAGAAAATTCCATTCTCAAAGGGCATGCAGACGGTGTACGCCCAGCTTTCAAAGCTCCAGCTAAATGCTATGCGCATGGAATCAAAGAGTTGATTATAGATTGCTGGGATGAGAGTCCATCGAAGAGACCAAGTTTTAGGCAGATAATCACAAGGCTGGAAACTATTCATCACAGTCTTAGCCACAGAAGGCGTTGGAAGCTCCCGACGTTGAGATGCTTTCAGAATGCAGAGGCAAAGATAAGAAGAGACCATCGCTCAAGCAGCCGTAGCTTTTCATCGCGATCGGCAAGCAGCATATGA 1377 46.04 MDQTNSSNNGVRFSLGKQSSMAPERRPEEEAAAEDGEEIDAGVRLMYSANEGDLEGINELLDSGIDVNFHDIDNRTALHVAACQGSSEIVDLLLRRGAEIDPKDRWGSTPLADAIYYKNHEVIKLLEKHGAKHLNAPMLVKHARQVPEYEIDPEEFDFTNSVDLTKGTFHLALWRGIRVAVKELPEDVTSEEDKVNAFRDELALLQKLRHPNVVQFLGAVTQSSPMMIVTEYLPKGDLWQFLHRKGALKPIVAVKLALDIARGMNYLHEYKPAPIIHRDLEPSNILRDDTGNLKVADFGVSKLLTVKEDKPLTCQGNACRYVAPEVFKNNGYDTKVDVYSFALILQEMIEGQPPFSNKKENSILKGHADGVRPAFKAPAKCYAHGIKELIIDCWDESPSKRPSFRQIITRLETIHHSLSHRRRWKLPTLRCFQNAEAKIRRDHRSSSRSFSSRSASSI 458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16457389 16463464 + Sed0019681.1 Sed01g2182 701486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2182 458 MobiDBLite consensus disorder prediction 1 39 - -
Sed01g2182 458 Pfam Protein tyrosine and serine/threonine kinase 176 411 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g2182 458 SUPERFAMILY Protein kinase-like (PK-like) 170 435 IPR011009 -
Sed01g2182 458 ProSiteProfiles Ankyrin repeat region circular profile. 73 105 - -
Sed01g2182 458 ProSiteProfiles Ankyrin repeat profile. 73 105 IPR002110 GO:0005515(InterPro)
Sed01g2182 458 FunFam Integrin-linked protein kinase family 234 427 - -
Sed01g2182 458 MobiDBLite consensus disorder prediction 1 16 - -
Sed01g2182 458 CDD STKc_MAP3K-like 167 411 - -
Sed01g2182 458 SMART ANK_2a 40 69 IPR002110 GO:0005515(InterPro)
Sed01g2182 458 SMART ANK_2a 73 102 IPR002110 GO:0005515(InterPro)
Sed01g2182 458 SMART ANK_2a 106 136 IPR002110 GO:0005515(InterPro)
Sed01g2182 458 Gene3D Transferase(Phosphotransferase) domain 1 156 420 - -
Sed01g2182 458 FunFam Integrin-linked protein kinase family 24 149 - -
Sed01g2182 458 Gene3D - 10 146 IPR036770 -
Sed01g2182 458 FunFam serine/threonine-protein kinase STY46-like 151 234 - -
Sed01g2182 458 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 50 412 IPR051681 GO:0004674(PANTHER)
Sed01g2182 458 Pfam Ankyrin repeats (3 copies) 45 132 IPR002110 GO:0005515(InterPro)
Sed01g2182 458 ProSiteProfiles Protein kinase domain profile. 123 418 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g2182 458 PIRSF ILK 1 433 - -
Sed01g2182 458 MobiDBLite consensus disorder prediction 22 39 - -
Sed01g2182 458 SUPERFAMILY Ankyrin repeat 44 132 IPR036770 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2182 Sed-Chr1:16457389 Sed01g2185 Sed-Chr1:16457389 5.40E-231 dispersed
Sed01g2182 Sed-Chr1:16457389 Sed01g2183 Sed-Chr1:16457389 8.90E-165 tandem
Sed01g2182 Sed-Chr1:16457389 Sed08g2714 Sed-Chr8:39061769 1.20E-193 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78656 PF07714 PK_Tyr_Ser-Thr 1.10E-54 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2182 - - - 0.0