Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g2182 | ATGGATCAGACGAATAGCAGTAACAACGGAGTGAGGTTTTCGCTGGGGAAGCAGTCGTCGATGGCGCCGGAGCGGCGGCCGGAGGAGGAGGCGGCGGCGGAGGACGGGGAGGAGATCGATGCGGGAGTGAGATTGATGTATTCGGCGAATGAAGGCGATTTGGAAGGGATTAACGAGCTTTTAGATTCTGGAATTGATGTAAATTTTCACGATATTGATAATCGGACGGCTCTTCATGTTGCTGCTTGTCAAGGCTCCTCGGAGATCGTCGATTTGTTGCTCCGGCGAGGCGCTGAAATTGACCCCAAAGATCGCTGGGGTAGTACGCCTCTTGCAGATGCTATATACTACAAAAACCATGAAGTTATCAAATTGTTGGAAAAACATGGAGCAAAACATCTGAATGCTCCCATGCTCGTAAAACATGCTCGTCAAGTTCCAGAATATGAAATTGATCCCGAGGAATTTGACTTCACAAACAGTGTCGACTTGACCAAGGGAACCTTCCATTTAGCATTATGGCGTGGAATCCGAGTTGCAGTTAAAGAGCTGCCCGAGGATGTGACTTCAGAGGAGGATAAAGTGAACGCCTTTAGAGATGAACTTGCATTGCTGCAGAAGCTTCGGCATCCGAATGTCGTTCAATTTCTTGGTGCTGTCACTCAAAGTAGTCCCATGATGATTGTTACTGAATATTTGCCAAAGGGAGATCTTTGGCAATTTTTACATAGAAAGGGAGCTTTAAAACCAATAGTAGCTGTGAAGCTTGCCCTTGATATTGCAAGGGGAATGAACTATCTGCACGAATACAAACCCGCGCCAATCATCCACCGTGATCTCGAGCCATCAAATATATTGCGAGACGACACTGGGAACCTGAAAGTTGCAGATTTTGGAGTTAGCAAGTTGCTCACTGTCAAGGAGGATAAGCCTCTAACTTGTCAAGGCAATGCCTGCCGATATGTTGCTCCAGAAGTTTTCAAAAACAATGGATACGATACCAAAGTGGATGTCTACTCCTTTGCTTTAATTCTACAAGAGATGATCGAAGGTCAACCGCCATTTTCAAACAAGAAAGAAAATTCCATTCTCAAAGGGCATGCAGACGGTGTACGCCCAGCTTTCAAAGCTCCAGCTAAATGCTATGCGCATGGAATCAAAGAGTTGATTATAGATTGCTGGGATGAGAGTCCATCGAAGAGACCAAGTTTTAGGCAGATAATCACAAGGCTGGAAACTATTCATCACAGTCTTAGCCACAGAAGGCGTTGGAAGCTCCCGACGTTGAGATGCTTTCAGAATGCAGAGGCAAAGATAAGAAGAGACCATCGCTCAAGCAGCCGTAGCTTTTCATCGCGATCGGCAAGCAGCATATGA | 1377 | 46.04 | MDQTNSSNNGVRFSLGKQSSMAPERRPEEEAAAEDGEEIDAGVRLMYSANEGDLEGINELLDSGIDVNFHDIDNRTALHVAACQGSSEIVDLLLRRGAEIDPKDRWGSTPLADAIYYKNHEVIKLLEKHGAKHLNAPMLVKHARQVPEYEIDPEEFDFTNSVDLTKGTFHLALWRGIRVAVKELPEDVTSEEDKVNAFRDELALLQKLRHPNVVQFLGAVTQSSPMMIVTEYLPKGDLWQFLHRKGALKPIVAVKLALDIARGMNYLHEYKPAPIIHRDLEPSNILRDDTGNLKVADFGVSKLLTVKEDKPLTCQGNACRYVAPEVFKNNGYDTKVDVYSFALILQEMIEGQPPFSNKKENSILKGHADGVRPAFKAPAKCYAHGIKELIIDCWDESPSKRPSFRQIITRLETIHHSLSHRRRWKLPTLRCFQNAEAKIRRDHRSSSRSFSSRSASSI | 458 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 16457389 | 16463464 | + | Sed0019681.1 | Sed01g2182 | 701486 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g2182 | 458 | MobiDBLite | consensus disorder prediction | 1 | 39 | - | - | |
Sed01g2182 | 458 | Pfam | Protein tyrosine and serine/threonine kinase | 176 | 411 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed01g2182 | 458 | SUPERFAMILY | Protein kinase-like (PK-like) | 170 | 435 | IPR011009 | - | |
Sed01g2182 | 458 | ProSiteProfiles | Ankyrin repeat region circular profile. | 73 | 105 | - | - | |
Sed01g2182 | 458 | ProSiteProfiles | Ankyrin repeat profile. | 73 | 105 | IPR002110 | GO:0005515(InterPro) | |
Sed01g2182 | 458 | FunFam | Integrin-linked protein kinase family | 234 | 427 | - | - | |
Sed01g2182 | 458 | MobiDBLite | consensus disorder prediction | 1 | 16 | - | - | |
Sed01g2182 | 458 | CDD | STKc_MAP3K-like | 167 | 411 | - | - | |
Sed01g2182 | 458 | SMART | ANK_2a | 40 | 69 | IPR002110 | GO:0005515(InterPro) | |
Sed01g2182 | 458 | SMART | ANK_2a | 73 | 102 | IPR002110 | GO:0005515(InterPro) | |
Sed01g2182 | 458 | SMART | ANK_2a | 106 | 136 | IPR002110 | GO:0005515(InterPro) | |
Sed01g2182 | 458 | Gene3D | Transferase(Phosphotransferase) domain 1 | 156 | 420 | - | - | |
Sed01g2182 | 458 | FunFam | Integrin-linked protein kinase family | 24 | 149 | - | - | |
Sed01g2182 | 458 | Gene3D | - | 10 | 146 | IPR036770 | - | |
Sed01g2182 | 458 | FunFam | serine/threonine-protein kinase STY46-like | 151 | 234 | - | - | |
Sed01g2182 | 458 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 50 | 412 | IPR051681 | GO:0004674(PANTHER) | |
Sed01g2182 | 458 | Pfam | Ankyrin repeats (3 copies) | 45 | 132 | IPR002110 | GO:0005515(InterPro) | |
Sed01g2182 | 458 | ProSiteProfiles | Protein kinase domain profile. | 123 | 418 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed01g2182 | 458 | PIRSF | ILK | 1 | 433 | - | - | |
Sed01g2182 | 458 | MobiDBLite | consensus disorder prediction | 22 | 39 | - | - | |
Sed01g2182 | 458 | SUPERFAMILY | Ankyrin repeat | 44 | 132 | IPR036770 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g2182 | Sed-Chr1:16457389 | Sed01g2185 | Sed-Chr1:16457389 | 5.40E-231 | dispersed | |
Sed01g2182 | Sed-Chr1:16457389 | Sed01g2183 | Sed-Chr1:16457389 | 8.90E-165 | tandem | |
Sed01g2182 | Sed-Chr1:16457389 | Sed08g2714 | Sed-Chr8:39061769 | 1.20E-193 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
78656 | PF07714 | PK_Tyr_Ser-Thr | 1.10E-54 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g2182 | - | - | - | 0.0 |