Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2186 ATGTTTTCAGAAATGGATCAGACGAATAGCAGTAACAACGGAGTGAGGTTTTCGCTGGGGAAGCAGTCGTCGATGGCGCCGGAGCGGCGGCCGGAGGAGGAGGCGGCGGCGGAGGACGGGGAGGAGATCGATGCGGGAGTGAGATTGATGTATTCGGCGAATGAAGGCGATTTGGAAGGGATTAACGAGCTTTTAGATTCTGGAATTGATGTAAATTTTCACGATATTGATAATCGGACGGCTCTTCATGTTGCTGCTTGTCAAGGCTCCTCGGAGATCGTCGATTTGTTGCTCCGGCGAGGCGCTGAAATTGACCCCAAAGATCGCTGGGGTAGTACGCCTCTTGCAGATGCTATATACTACAAAAACCATGAAGTTATCAAATTGTTGGAAAAACATGGAGCAAAACATCTGAATGCTCCCATGCTCGTAAAACATGCTCGTCAAGTTCCAGAATATGAAATTGATCCCGAGGAATTTGACTTCACAAACAGTGTCGACTTGACCAAGGGAACCTTCCATTTAGCATTATGGCGTGGAATCCGAGTTGCAGTTAAAGAGCTGCCCGAGGATGTGACTTCAGAGGAGGATAAAGTGAACGCCTTTAGAGATGAACTTGCATTGCTGCAGAAGCTTCGGCATCCGAATGTCGTTCAATTTCTTGGTGCTGTCACTCAAAGTAGTCCCATGATGATTGTTACTGAATATTTGCCAAAGGGAGATCTTTGGCAATTTTTACATAGAAAGGGAGCTTTAAAACCAATAGTAGCTGTGAAGCTTGCCCTTGATATTGCAAGGGGAATGAACTATCTGCACGAATACAAACCCGCGCCAATCATCCACCGTGATCTCGAGCCATCAAATATATTGCGAGACGACACTGGGAACCTGAAAGTTGCAGATTTTGGAGTTAGCAAGTTGCTCACTGTCAAGGAGGATAAGCCTCTAACTTGTCAAGGCAATGCCTGCCGATATGTTGCTCCAGAAGTTTTCAAAAACAATGGATACGATACCAAAGTGGATGTCTACTCCTTTGCTTTAATTCTACAAGAGGTTTGGCTCTTTACATTCATGTCAACTTGTGAATGCATTTGA 1095 45.48 MFSEMDQTNSSNNGVRFSLGKQSSMAPERRPEEEAAAEDGEEIDAGVRLMYSANEGDLEGINELLDSGIDVNFHDIDNRTALHVAACQGSSEIVDLLLRRGAEIDPKDRWGSTPLADAIYYKNHEVIKLLEKHGAKHLNAPMLVKHARQVPEYEIDPEEFDFTNSVDLTKGTFHLALWRGIRVAVKELPEDVTSEEDKVNAFRDELALLQKLRHPNVVQFLGAVTQSSPMMIVTEYLPKGDLWQFLHRKGALKPIVAVKLALDIARGMNYLHEYKPAPIIHRDLEPSNILRDDTGNLKVADFGVSKLLTVKEDKPLTCQGNACRYVAPEVFKNNGYDTKVDVYSFALILQEVWLFTFMSTCECI 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16457389 16463464 + Sed0019681.5 Sed01g2186 701490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2186 364 SUPERFAMILY Protein kinase-like (PK-like) 171 354 IPR011009 -
Sed01g2186 364 PIRSF ILK 2 357 - -
Sed01g2186 364 Pfam Ankyrin repeats (3 copies) 49 136 IPR002110 GO:0005515(InterPro)
Sed01g2186 364 SMART ANK_2a 44 73 IPR002110 GO:0005515(InterPro)
Sed01g2186 364 SMART ANK_2a 110 140 IPR002110 GO:0005515(InterPro)
Sed01g2186 364 SMART ANK_2a 77 106 IPR002110 GO:0005515(InterPro)
Sed01g2186 364 ProSiteProfiles Ankyrin repeat region circular profile. 77 109 - -
Sed01g2186 364 Pfam Protein kinase domain 179 353 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g2186 364 FunFam serine/threonine-protein kinase STY46-like 155 238 - -
Sed01g2186 364 SUPERFAMILY Ankyrin repeat 48 136 IPR036770 -
Sed01g2186 364 MobiDBLite consensus disorder prediction 1 43 - -
Sed01g2186 364 MobiDBLite consensus disorder prediction 1 20 - -
Sed01g2186 364 MobiDBLite consensus disorder prediction 26 43 - -
Sed01g2186 364 Gene3D Transferase(Phosphotransferase) domain 1 159 357 - -
Sed01g2186 364 Gene3D - 12 150 IPR036770 -
Sed01g2186 364 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 48 351 IPR051681 GO:0004674(PANTHER)
Sed01g2186 364 FunFam Integrin-linked protein kinase family 28 153 - -
Sed01g2186 364 ProSiteProfiles Ankyrin repeat profile. 77 109 IPR002110 GO:0005515(InterPro)
Sed01g2186 364 ProSiteProfiles Protein kinase domain profile. 127 364 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2183 Sed-Chr1:16457389 Sed01g2186 Sed-Chr1:16457389 1.40E-173 dispersed
Sed01g2186 Sed-Chr1:16457389 Sed01g2188 Sed-Chr1:16457389 3.50E-148 dispersed
Sed01g2185 Sed-Chr1:16457389 Sed01g2186 Sed-Chr1:16457389 4.30E-167 tandem
Sed01g2186 Sed-Chr1:16457389 Sed01g2187 Sed-Chr1:16457389 2.00E-167 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78660 PF07714 PK_Tyr_Ser-Thr 2.00E-42 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2186 - - - 0.0